Wall clock time and date at job start Tue Mar 31 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47281 * 2 1 4 4 C 1.46766 * 124.34665 * 269.95037 * 3 2 1 5 5 C 1.54478 * 105.46967 * 197.03586 * 4 3 2 6 6 H 1.09005 * 111.00165 * 216.45231 * 5 4 3 7 7 C 1.52998 * 110.96779 * 92.70596 * 5 4 3 8 8 N 1.46506 * 109.47237 * 181.16317 * 7 5 4 9 9 C 1.34773 * 119.99969 * 179.72043 * 8 7 5 10 10 O 1.21586 * 120.00012 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99940 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00211 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47428 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47327 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99793 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47127 * 59.99950 * 18 16 14 20 20 H 1.48497 * 109.47199 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47080 * 300.00056 * 18 16 14 22 22 C 1.54625 * 101.76964 * 334.58365 * 5 4 3 23 23 C 1.34419 * 124.35355 * 89.97328 * 3 2 1 24 24 O 1.21288 * 124.93536 * 359.53564 * 23 3 2 25 25 H 1.08995 * 109.47602 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47116 * 300.00616 * 1 2 3 27 27 H 1.08998 * 109.46886 * 59.99745 * 1 2 3 28 28 H 1.08998 * 109.46772 * 239.99572 * 2 1 3 29 29 H 1.08999 * 109.47169 * 119.99788 * 2 1 3 30 30 H 1.09003 * 110.24360 * 78.04273 * 4 3 2 31 31 H 1.08998 * 110.24479 * 316.03656 * 4 3 2 32 32 H 1.09001 * 109.47671 * 61.16657 * 7 5 4 33 33 H 1.08998 * 109.47454 * 301.16654 * 7 5 4 34 34 H 0.97005 * 119.99811 * 0.02562 * 8 7 5 35 35 H 0.97004 * 120.00041 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.47182 * 299.99924 * 12 11 9 37 37 H 1.09001 * 109.47115 * 59.99869 * 12 11 9 38 38 H 1.08998 * 109.47065 * 300.00226 * 13 12 11 39 39 H 1.09001 * 109.46892 * 59.99962 * 13 12 11 40 40 H 0.97000 * 120.00440 * 179.97438 * 17 16 14 41 41 H 1.09005 * 110.48599 * 143.47338 * 22 5 4 42 42 H 1.08994 * 110.48987 * 266.11897 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2954 2.1616 -1.2118 5 6 3.1756 3.3435 -0.7484 6 1 2.9330 4.2513 -1.3010 7 6 4.6616 3.0050 -0.8823 8 7 5.4646 4.1353 -0.4091 9 6 6.8101 4.0607 -0.4278 10 8 7.3576 3.0555 -0.8378 11 7 7.5488 5.1004 0.0080 12 6 9.0114 5.0196 -0.0128 13 6 9.6020 6.3225 0.5298 14 6 11.1066 6.2391 0.5090 15 1 11.5929 5.3462 0.1447 16 6 11.8622 7.3027 0.9549 17 7 11.2700 8.3897 1.3990 18 14 13.7271 7.1996 0.9284 19 1 14.1915 6.9894 -0.4663 20 1 14.3003 8.4636 1.4563 21 1 14.1721 6.0634 1.7748 22 6 2.7697 3.4754 0.7378 23 6 2.2708 2.0965 1.1097 24 8 2.1197 1.6950 2.2442 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.3651 2.5306 -1.6436 31 1 2.8337 1.5523 -1.9378 32 1 4.8961 2.8054 -1.9279 33 1 4.8886 2.1224 -0.2843 34 1 5.0277 4.9357 -0.0782 35 1 7.1120 5.9025 0.3348 36 1 9.3381 4.1857 0.6085 37 1 9.3522 4.8652 -1.0366 38 1 9.2753 7.1561 -0.0918 39 1 9.2612 6.4773 1.5536 40 1 11.8015 9.1378 1.7131 41 1 3.6327 3.7458 1.3463 42 1 1.9750 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593390282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:23 Heat of formation + Delta-G solvation = -105.884903 kcal Electronic energy + Delta-G solvation = -21740.363374 eV Core-core repulsion = 18332.678740 eV Total energy + Delta-G solvation = -3407.684635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68179 -40.81109 -37.95889 -36.73358 -36.09969 -34.82774 -34.21654 -31.63281 -30.51849 -29.02713 -27.20955 -25.97576 -24.23880 -22.94291 -21.99634 -21.84640 -20.38925 -19.37856 -18.40364 -17.94865 -17.44763 -16.84564 -16.72486 -16.48537 -16.43502 -15.46790 -15.42383 -15.16924 -14.96127 -14.64222 -14.51143 -14.27926 -14.10039 -13.91091 -13.39681 -13.20077 -12.95947 -12.88364 -12.62849 -12.52708 -12.40517 -12.19213 -12.09692 -11.89345 -11.67126 -11.49714 -11.20690 -10.85538 -10.58796 -10.32964 -9.75294 -9.67720 -8.22656 -6.32737 1.42742 1.45189 1.52305 1.53338 1.77969 2.08061 2.19529 2.42502 3.12046 3.30458 3.36813 3.56171 3.66825 3.94444 4.12666 4.27019 4.40793 4.48146 4.49047 4.54132 4.62694 4.65995 4.71568 4.77143 4.84519 4.88206 4.90157 4.97967 5.14730 5.26240 5.33332 5.50969 5.54006 5.61657 5.61743 5.80694 6.07880 6.11769 6.18983 6.80256 7.13254 7.16643 7.36391 7.62962 8.88924 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.042976 B = 0.002400 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.371960 B =11663.441979 C =11791.515146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.619 5.619 4 C 0.109 3.891 5 C -0.095 4.095 6 H 0.146 0.854 7 C 0.146 3.854 8 N -0.730 5.730 9 C 0.696 3.304 10 O -0.643 6.643 11 N -0.733 5.733 12 C 0.160 3.840 13 C 0.024 3.976 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.270 1.270 22 C -0.150 4.150 23 C 0.502 3.498 24 O -0.592 6.592 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.413 0.587 35 H 0.408 0.592 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.011 0.989 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.940 -9.969 -8.239 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.352 5.352 4 C -0.013 4.013 5 C -0.114 4.114 6 H 0.164 0.836 7 C 0.022 3.978 8 N -0.388 5.388 9 C 0.396 3.604 10 O -0.525 6.525 11 N -0.388 5.388 12 C 0.036 3.964 13 C -0.013 4.013 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.195 1.195 22 C -0.190 4.190 23 C 0.291 3.709 24 O -0.473 6.473 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.250 0.750 35 H 0.243 0.757 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.520 -11.011 -7.989 28.041 hybrid contribution 0.789 0.649 0.784 1.288 sum -23.731 -10.362 -7.205 26.878 Atomic orbital electron populations 1.22083 0.94727 1.03171 1.01893 1.21500 0.95188 0.80770 1.03401 1.48546 1.64763 1.14213 1.07697 1.22345 1.00610 0.91970 0.86390 1.22422 0.91946 1.01573 0.95437 0.83630 1.21231 0.89211 0.87542 0.99820 1.44884 1.02989 1.21020 1.69891 1.16192 0.82497 0.83086 0.78651 1.90866 1.72652 1.33062 1.55898 1.45201 1.07139 1.18091 1.68373 1.21053 0.77201 0.98719 0.99448 1.19122 0.94966 0.91722 0.95524 1.21445 0.92569 1.01520 1.43038 0.92347 1.25865 1.03939 0.94874 0.94540 1.70046 1.37538 1.05725 1.43217 0.85505 0.79167 0.77542 0.78876 1.19253 1.20598 1.19510 1.22509 1.04122 0.94598 0.97794 1.21577 0.76114 0.89131 0.84091 1.90696 1.56255 1.76762 1.23563 0.90092 0.94685 0.90804 0.87615 0.92492 0.87189 0.88318 0.90591 0.94383 0.74986 0.75672 0.94208 0.93714 0.97062 0.97414 0.92555 0.88796 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.24 71.98 0.74 -0.96 16 2 C 0.11 1.47 6.65 86.38 0.57 2.04 16 3 N -0.62 -9.03 2.93 -817.97 -2.40 -11.43 16 4 C 0.11 0.71 6.90 86.83 0.60 1.31 16 5 C -0.09 -0.76 3.22 -9.74 -0.03 -0.79 16 6 H 0.15 0.23 8.14 -2.38 -0.02 0.21 16 7 C 0.15 2.50 5.02 86.38 0.43 2.93 16 8 N -0.73 -15.38 5.11 -478.53 -2.45 -17.83 16 9 C 0.70 23.24 8.57 179.06 1.53 24.77 16 10 O -0.64 -27.49 16.34 -3.99 -0.07 -27.56 16 11 N -0.73 -25.18 5.56 -478.54 -2.66 -27.84 16 12 C 0.16 6.97 5.61 86.38 0.48 7.46 16 13 C 0.02 1.22 5.09 29.85 0.15 1.37 16 14 C -0.55 -30.68 9.11 25.60 0.23 -30.45 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.01 0.37 5.46 84.65 0.46 0.83 16 17 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 18 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 C -0.15 -1.94 6.24 30.59 0.19 -1.75 16 23 C 0.50 10.75 8.02 87.90 0.71 11.45 16 24 O -0.59 -19.09 17.60 -3.06 -0.05 -19.14 16 25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 1.03 7.93 -2.39 -0.02 1.01 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 0.46 7.91 -2.39 -0.02 0.44 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.41 5.83 8.21 -92.70 -0.76 5.07 16 35 H 0.41 11.60 8.49 -92.71 -0.79 10.81 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.09 1.50 7.40 -2.38 -0.02 1.49 16 42 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -81.23 353.63 0.23 -80.99 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -0.53 Total: 12.73 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.07 Total: 18.23 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -7.22 Total: -111.02 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.12 Total: -46.70 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.23 0.23 -80.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593390282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.891 kcal (2) G-P(sol) polarization free energy of solvation -81.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds