Wall clock time and date at job start Tue Mar 31 2020 03:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00104 * 2 1 4 4 C 1.53000 * 109.47445 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47075 * 65.00030 * 4 3 2 6 6 C 1.36933 * 120.00455 * 270.00294 * 5 4 3 7 7 H 1.07999 * 120.00647 * 145.91646 * 6 5 4 8 8 C 1.38816 * 119.99706 * 325.92310 * 6 5 4 9 9 N 1.31620 * 119.99725 * 336.75155 * 8 6 5 10 10 Si 1.86794 * 120.00328 * 156.75963 * 8 6 5 11 11 H 1.48503 * 109.47094 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47273 * 119.99640 * 10 8 6 13 13 H 1.48507 * 109.47166 * 239.99999 * 10 8 6 14 14 C 1.46498 * 119.99800 * 89.99742 * 5 4 3 15 15 C 1.50703 * 109.47104 * 89.53814 * 14 5 4 16 16 N 1.33318 * 126.55426 * 90.02223 * 15 14 5 17 17 N 1.28996 * 107.35727 * 180.02562 * 16 15 14 18 18 N 1.28781 * 108.72459 * 359.97438 * 17 16 15 19 19 C 1.46500 * 125.44682 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.47160 * 359.97438 * 19 18 17 21 21 C 1.53004 * 109.47303 * 119.97582 * 19 18 17 22 22 C 1.53002 * 109.47087 * 239.97797 * 19 18 17 23 23 N 1.28882 * 109.10175 * 359.73293 * 18 17 16 24 24 H 1.09004 * 109.47363 * 299.99350 * 1 2 3 25 25 H 1.08999 * 109.47627 * 59.99732 * 1 2 3 26 26 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46859 * 60.00281 * 3 2 1 28 28 H 1.09005 * 109.46994 * 300.00633 * 3 2 1 29 29 H 1.08999 * 109.46886 * 305.00075 * 4 3 2 30 30 H 1.08994 * 109.47011 * 185.00167 * 4 3 2 31 31 H 0.97004 * 120.00154 * 179.97438 * 9 8 6 32 32 H 1.09006 * 109.47310 * 209.53500 * 14 5 4 33 33 H 1.09001 * 109.47813 * 329.53530 * 14 5 4 34 34 H 1.08994 * 109.47023 * 59.99487 * 20 19 18 35 35 H 1.08995 * 109.46954 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.46524 * 299.99741 * 20 19 18 37 37 H 1.09004 * 109.46500 * 60.00100 * 21 19 18 38 38 H 1.08995 * 109.47154 * 179.97438 * 21 19 18 39 39 H 1.08994 * 109.46891 * 300.00519 * 21 19 18 40 40 H 1.08997 * 109.47410 * 60.00282 * 22 19 18 41 41 H 1.09005 * 109.46925 * 180.02562 * 22 19 18 42 42 H 1.09004 * 109.47013 * 299.99871 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0967 -0.7969 -1.3370 7 1 3.8752 -1.3023 -2.2654 8 6 4.5041 -1.5273 -0.2291 9 7 5.1967 -0.9434 0.7257 10 14 4.0695 -3.3389 -0.0933 11 1 3.2912 -3.7522 -1.2887 12 1 5.3158 -4.1422 -0.0116 13 1 3.2553 -3.5625 1.1284 14 6 4.2862 1.4008 -2.4148 15 6 5.7415 1.7907 -2.3785 16 7 6.7569 1.1205 -2.9236 17 7 7.8348 1.7822 -2.6704 18 7 7.5255 2.8325 -1.9924 19 6 8.4716 3.8422 -1.5111 20 6 9.8896 3.4570 -1.9379 21 6 8.1116 5.2042 -2.1081 22 6 8.4020 3.9199 0.0153 23 7 6.2499 2.8564 -1.8103 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6884 1.8464 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1765 0.0889 31 1 5.4811 -1.4536 1.5001 32 1 4.0822 0.8430 -3.3288 33 1 3.6688 2.2988 -2.3917 34 1 9.9392 3.4016 -3.0253 35 1 10.5935 4.2080 -1.5795 36 1 10.1460 2.4868 -1.5125 37 1 7.1014 5.4785 -1.8039 38 1 8.8152 5.9555 -1.7497 39 1 8.1611 5.1488 -3.1955 40 1 8.6585 2.9497 0.4406 41 1 9.1056 4.6715 0.3734 42 1 7.3918 4.1943 0.3194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:47 Heat of formation + Delta-G solvation = 104.076501 kcal Electronic energy + Delta-G solvation = -23520.044573 eV Core-core repulsion = 20153.757299 eV Total energy + Delta-G solvation = -3366.287274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.38737 -37.42248 -37.12635 -35.35570 -32.53932 -32.11815 -30.89207 -28.97003 -27.60439 -27.53972 -26.18724 -25.62644 -23.85237 -23.16321 -21.58563 -20.22273 -19.79298 -16.75902 -16.66945 -16.38763 -15.68364 -15.07910 -14.72504 -14.29323 -14.13342 -13.97360 -13.76723 -13.39240 -13.28533 -13.03747 -12.74716 -12.49412 -12.35994 -11.88280 -11.83931 -11.65457 -11.41504 -11.33296 -11.09189 -10.86723 -10.75803 -10.73210 -10.57152 -10.17581 -10.03833 -9.96546 -9.86287 -9.67806 -9.17329 -8.78593 -8.39840 -6.65001 -5.69749 -3.21464 2.10094 2.52250 3.22610 3.50626 3.56755 3.61597 4.32439 4.57577 4.62496 4.67348 4.72931 5.03795 5.30988 5.35411 5.40592 5.47392 5.50388 5.55433 5.61060 5.62645 5.67140 5.79222 5.84386 5.88624 6.06709 6.09979 6.13044 6.17377 6.29303 6.38659 6.53251 6.67847 6.73877 6.76732 6.79890 7.06075 7.70238 7.94008 8.10415 8.57421 9.22379 9.36021 9.86889 10.38122 11.32627 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.005327 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.672313 B = 5254.861391 C = 5923.160521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.051 3.949 4 C 0.138 3.862 5 N -0.556 5.556 6 C -0.237 4.237 7 H 0.066 0.934 8 C 0.020 3.980 9 N -0.890 5.890 10 Si 0.903 3.097 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.227 3.773 15 C 0.174 3.826 16 N -0.276 5.276 17 N -0.085 5.085 18 N -0.146 5.146 19 C 0.183 3.817 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.156 4.156 23 N -0.322 5.322 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.251 0.749 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 12.819 -1.993 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.028 4.028 4 C 0.012 3.988 5 N -0.274 5.274 6 C -0.367 4.367 7 H 0.084 0.916 8 C -0.180 4.180 9 N -0.533 5.533 10 Si 0.733 3.267 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.216 1.216 14 C 0.096 3.904 15 C -0.112 4.112 16 N -0.147 5.147 17 N -0.078 5.078 18 N -0.059 5.059 19 C 0.101 3.899 20 C -0.208 4.208 21 C -0.212 4.212 22 C -0.215 4.215 23 N -0.173 5.173 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.126 0.874 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.186 12.539 -1.956 13.085 hybrid contribution -0.797 -0.656 0.491 1.143 sum 2.389 11.883 -1.465 12.209 Atomic orbital electron populations 1.22631 0.84280 1.01474 0.98387 1.88228 1.16514 1.27625 1.94813 1.23328 0.98378 0.84167 0.96972 1.21136 0.87801 0.97076 0.92830 1.44019 1.72297 1.02683 1.08364 1.19016 1.38599 0.80760 0.98338 0.91603 1.25003 0.96462 0.97911 0.98639 1.69987 1.36131 1.36094 1.11050 0.86224 0.77482 0.85161 0.77796 1.20030 1.22275 1.21553 1.19672 0.81782 0.94847 0.94121 1.27733 1.01767 0.87181 0.94471 1.75778 0.95052 1.22683 1.21224 1.78769 1.22723 0.96132 1.10185 1.50254 1.04562 1.16998 1.34103 1.21058 0.87333 0.85632 0.95856 1.22026 0.92255 1.03268 1.03212 1.22168 1.03671 0.93916 1.01481 1.22181 1.04163 1.03591 0.91524 1.74522 0.92741 1.25313 1.24748 0.95617 0.95221 0.90752 0.95592 0.95282 0.87444 0.93859 0.93893 0.90460 0.91920 0.90956 0.90050 0.90742 0.90621 0.89964 0.91804 0.91358 0.90089 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.80 10.18 -35.23 -0.36 -8.16 16 3 C 0.05 1.02 6.28 37.16 0.23 1.26 16 4 C 0.14 3.25 5.73 -4.04 -0.02 3.23 16 5 N -0.56 -13.81 2.41 -174.61 -0.42 -14.23 16 6 C -0.24 -6.59 8.98 -15.06 -0.14 -6.72 16 7 H 0.07 1.85 7.93 -52.49 -0.42 1.43 16 8 C 0.02 0.56 4.94 -17.43 -0.09 0.47 16 9 N -0.89 -26.35 11.34 55.49 0.63 -25.72 16 10 Si 0.90 22.95 29.61 -169.99 -5.03 17.92 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 C 0.23 4.92 6.29 -5.19 -0.03 4.89 16 15 C 0.17 3.93 7.95 -156.62 -1.25 2.69 16 16 N -0.28 -6.58 12.50 32.45 0.41 -6.18 16 17 N -0.09 -1.81 12.24 60.35 0.74 -1.07 16 18 N -0.15 -2.73 3.73 0.49 0.00 -2.73 16 19 C 0.18 2.41 1.30 -131.81 -0.17 2.24 16 20 C -0.15 -1.64 7.91 37.16 0.29 -1.35 16 21 C -0.15 -1.60 8.66 37.16 0.32 -1.27 16 22 C -0.16 -1.93 8.67 37.16 0.32 -1.61 16 23 N -0.32 -6.66 11.83 32.47 0.38 -6.28 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.11 2.94 5.33 -51.93 -0.28 2.66 16 30 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 1.62 8.04 -51.93 -0.42 1.21 16 33 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -33.78 352.62 -4.75 -38.53 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.00 Total: -2.83 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 0.59 Total: 5.42 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 1.74 Total: -56.20 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.36 Total: -8.16 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.78 -4.75 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.609 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds