Wall clock time and date at job start Tue Mar 31 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00104 * 2 1 4 4 C 1.53000 * 109.47445 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47075 * 65.00030 * 4 3 2 6 6 C 1.36933 * 120.00455 * 270.00294 * 5 4 3 7 7 H 1.07999 * 120.00647 * 145.91646 * 6 5 4 8 8 C 1.38816 * 119.99706 * 325.92310 * 6 5 4 9 9 N 1.31620 * 119.99725 * 336.75155 * 8 6 5 10 10 Si 1.86794 * 120.00328 * 156.75963 * 8 6 5 11 11 H 1.48503 * 109.47094 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47273 * 119.99640 * 10 8 6 13 13 H 1.48507 * 109.47166 * 239.99999 * 10 8 6 14 14 C 1.46498 * 119.99800 * 89.99742 * 5 4 3 15 15 C 1.50703 * 109.47104 * 89.53814 * 14 5 4 16 16 N 1.33318 * 126.55426 * 90.02223 * 15 14 5 17 17 N 1.28996 * 107.35727 * 180.02562 * 16 15 14 18 18 N 1.28781 * 108.72459 * 359.97438 * 17 16 15 19 19 C 1.46500 * 125.44682 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.47160 * 359.97438 * 19 18 17 21 21 C 1.53004 * 109.47303 * 119.97582 * 19 18 17 22 22 C 1.53002 * 109.47087 * 239.97797 * 19 18 17 23 23 N 1.28882 * 109.10175 * 359.73293 * 18 17 16 24 24 H 1.09004 * 109.47363 * 299.99350 * 1 2 3 25 25 H 1.08999 * 109.47627 * 59.99732 * 1 2 3 26 26 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46859 * 60.00281 * 3 2 1 28 28 H 1.09005 * 109.46994 * 300.00633 * 3 2 1 29 29 H 1.08999 * 109.46886 * 305.00075 * 4 3 2 30 30 H 1.08994 * 109.47011 * 185.00167 * 4 3 2 31 31 H 0.97004 * 120.00154 * 179.97438 * 9 8 6 32 32 H 1.09006 * 109.47310 * 209.53500 * 14 5 4 33 33 H 1.09001 * 109.47813 * 329.53530 * 14 5 4 34 34 H 1.08994 * 109.47023 * 59.99487 * 20 19 18 35 35 H 1.08995 * 109.46954 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.46524 * 299.99741 * 20 19 18 37 37 H 1.09004 * 109.46500 * 60.00100 * 21 19 18 38 38 H 1.08995 * 109.47154 * 179.97438 * 21 19 18 39 39 H 1.08994 * 109.46891 * 300.00519 * 21 19 18 40 40 H 1.08997 * 109.47410 * 60.00282 * 22 19 18 41 41 H 1.09005 * 109.46925 * 180.02562 * 22 19 18 42 42 H 1.09004 * 109.47013 * 299.99871 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0967 -0.7969 -1.3370 7 1 3.8752 -1.3023 -2.2654 8 6 4.5041 -1.5273 -0.2291 9 7 5.1967 -0.9434 0.7257 10 14 4.0695 -3.3389 -0.0933 11 1 3.2912 -3.7522 -1.2887 12 1 5.3158 -4.1422 -0.0116 13 1 3.2553 -3.5625 1.1284 14 6 4.2862 1.4008 -2.4148 15 6 5.7415 1.7907 -2.3785 16 7 6.7569 1.1205 -2.9236 17 7 7.8348 1.7822 -2.6704 18 7 7.5255 2.8325 -1.9924 19 6 8.4716 3.8422 -1.5111 20 6 9.8896 3.4570 -1.9379 21 6 8.1116 5.2042 -2.1081 22 6 8.4020 3.9199 0.0153 23 7 6.2499 2.8564 -1.8103 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6884 1.8464 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1765 0.0889 31 1 5.4811 -1.4536 1.5001 32 1 4.0822 0.8430 -3.3288 33 1 3.6688 2.2988 -2.3917 34 1 9.9392 3.4016 -3.0253 35 1 10.5935 4.2080 -1.5795 36 1 10.1460 2.4868 -1.5125 37 1 7.1014 5.4785 -1.8039 38 1 8.8152 5.9555 -1.7497 39 1 8.1611 5.1488 -3.1955 40 1 8.6585 2.9497 0.4406 41 1 9.1056 4.6715 0.3734 42 1 7.3918 4.1943 0.3194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594008019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:46 Heat of formation + Delta-G solvation = 80.915099 kcal Electronic energy + Delta-G solvation = -23521.048926 eV Core-core repulsion = 20153.757299 eV Total energy + Delta-G solvation = -3367.291627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.00892 -38.90103 -38.44898 -37.12550 -34.21589 -33.85118 -32.73491 -30.62740 -28.67633 -28.46819 -27.89382 -27.07784 -25.40203 -24.97367 -23.26594 -21.94258 -21.22900 -18.72500 -17.97445 -17.90321 -17.28043 -16.76739 -16.45411 -15.77259 -15.55438 -15.43787 -15.17593 -14.98078 -14.88040 -14.64550 -13.91352 -13.49175 -13.38926 -13.36268 -13.17206 -12.82971 -12.79346 -12.76337 -12.70127 -12.55815 -12.44839 -12.29423 -12.09384 -12.01069 -11.89057 -11.64545 -11.54309 -11.52132 -10.79999 -10.50429 -10.28849 -8.67425 -7.80495 -5.35032 0.50087 1.22828 1.44258 1.46731 1.51905 1.59578 2.57481 3.14244 3.24039 3.34352 3.56535 3.59940 3.69930 3.73169 3.89094 4.45264 4.49291 4.54090 4.57406 4.58669 4.63757 4.65449 4.71037 4.74078 4.74895 4.76624 4.85743 4.87540 4.96362 4.97150 5.00331 5.03826 5.11265 5.15547 5.30724 5.62102 5.72067 5.81101 6.42946 6.69758 7.17920 7.68881 7.84338 8.32524 9.18182 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.005327 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.672313 B = 5254.861391 C = 5923.160521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.140 3.860 5 N -0.567 5.567 6 C -0.233 4.233 7 H 0.057 0.943 8 C -0.027 4.027 9 N -0.919 5.919 10 Si 0.952 3.048 11 H -0.267 1.267 12 H -0.301 1.301 13 H -0.291 1.291 14 C 0.228 3.772 15 C 0.158 3.842 16 N -0.318 5.318 17 N -0.095 5.095 18 N -0.127 5.127 19 C 0.161 3.839 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.151 4.151 23 N -0.320 5.320 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.245 0.755 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.129 0.871 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 15.033 -2.137 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.019 4.019 4 C 0.014 3.986 5 N -0.286 5.286 6 C -0.364 4.364 7 H 0.074 0.926 8 C -0.224 4.224 9 N -0.564 5.564 10 Si 0.782 3.218 11 H -0.192 1.192 12 H -0.229 1.229 13 H -0.217 1.217 14 C 0.098 3.902 15 C -0.128 4.128 16 N -0.189 5.189 17 N -0.088 5.088 18 N -0.043 5.043 19 C 0.081 3.919 20 C -0.203 4.203 21 C -0.205 4.205 22 C -0.210 4.210 23 N -0.171 5.171 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.148 0.852 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.167 14.762 -2.124 15.246 hybrid contribution -0.727 -1.172 0.526 1.476 sum 2.440 13.590 -1.598 13.899 Atomic orbital electron populations 1.22822 0.81528 1.02600 1.00130 1.88146 1.19632 1.28635 1.95205 1.23121 0.95771 0.84120 0.98852 1.21016 0.90394 0.96135 0.91072 1.44076 1.73029 1.02185 1.09343 1.19093 1.37079 0.82461 0.97718 0.92570 1.25547 0.97165 1.00820 0.98861 1.70119 1.37880 1.36945 1.11498 0.85450 0.76852 0.81795 0.77732 1.19168 1.22884 1.21747 1.19729 0.81945 0.95632 0.92917 1.27718 1.01997 0.87873 0.95198 1.75719 0.95917 1.24207 1.23011 1.78664 1.22119 0.96933 1.11049 1.50915 1.04670 1.16762 1.31992 1.21898 0.87454 0.85870 0.96637 1.22088 0.91608 1.03669 1.02978 1.22191 1.04310 0.92747 1.01206 1.22209 1.04555 1.03526 0.90677 1.74458 0.93754 1.24766 1.24160 0.93632 0.93556 0.90077 0.93307 0.93490 0.91221 0.93443 0.94606 0.90313 0.88966 0.91318 0.85459 0.92857 0.91695 0.85545 0.92095 0.94120 0.85247 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.10 10.18 -148.98 -1.52 -18.61 16 3 C 0.06 2.33 6.28 71.98 0.45 2.78 16 4 C 0.14 6.60 5.73 86.38 0.49 7.10 16 5 N -0.57 -28.37 2.41 -706.35 -1.70 -30.07 16 6 C -0.23 -13.13 8.98 84.04 0.75 -12.38 16 7 H 0.06 3.22 7.93 -2.91 -0.02 3.19 16 8 C -0.03 -1.60 4.94 84.86 0.42 -1.18 16 9 N -0.92 -56.11 11.34 21.65 0.25 -55.87 16 10 Si 0.95 48.12 29.61 68.60 2.03 50.15 16 11 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 13 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 14 C 0.23 9.85 6.29 85.63 0.54 10.39 16 15 C 0.16 7.17 7.95 138.55 1.10 8.28 16 16 N -0.32 -15.47 12.50 -51.26 -0.64 -16.12 16 17 N -0.10 -4.09 12.24 37.02 0.45 -3.64 16 18 N -0.13 -4.71 3.73 -152.38 -0.57 -5.27 16 19 C 0.16 3.91 1.30 3.61 0.00 3.92 16 20 C -0.15 -2.85 7.91 71.98 0.57 -2.29 16 21 C -0.15 -2.56 8.66 71.98 0.62 -1.94 16 22 C -0.15 -3.45 8.67 71.98 0.62 -2.82 16 23 N -0.32 -13.12 11.83 -51.20 -0.61 -13.72 16 24 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.07 3.91 5.33 -2.39 -0.01 3.90 16 30 H 0.05 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.08 3.32 8.04 -2.38 -0.02 3.30 16 33 H 0.09 3.36 8.08 -2.39 -0.02 3.34 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -76.05 352.62 5.51 -70.54 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.98 Total: 8.71 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.83 Total: 13.91 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -2.82 Total: -124.69 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.52 Total: -18.61 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -76.05 5.51 -70.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.456 kcal (2) G-P(sol) polarization free energy of solvation -76.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds