Wall clock time and date at job start Tue Mar 31 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 109.46694 * 2 1 4 4 C 1.46495 * 120.00101 * 269.99586 * 3 2 1 5 5 C 1.34786 * 120.00098 * 89.99939 * 3 2 1 6 6 O 1.21349 * 119.99623 * 5.23274 * 5 3 2 7 7 C 1.49454 * 119.99822 * 184.95355 * 5 3 2 8 8 O 1.21341 * 119.99835 * 274.89332 * 7 5 3 9 9 N 1.34772 * 119.99520 * 94.89582 * 7 5 3 10 10 C 1.47086 * 120.87890 * 184.76260 * 9 7 5 11 11 C 1.53687 * 108.27780 * 128.75541 * 10 9 7 12 12 N 1.46901 * 109.25744 * 54.08239 * 11 10 9 13 13 C 1.46903 * 111.00277 * 172.60812 * 12 11 10 14 14 C 1.50704 * 109.46982 * 294.30450 * 13 12 11 15 15 H 1.07996 * 120.00062 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99839 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99891 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99830 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47069 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47194 * 119.99581 * 18 16 14 21 21 H 1.48505 * 109.47111 * 239.99813 * 18 16 14 22 22 C 1.46896 * 111.26893 * 296.75493 * 12 11 10 23 23 C 1.47082 * 120.88532 * 5.04335 * 9 7 5 24 24 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46975 * 300.00065 * 1 2 3 26 26 H 1.09001 * 109.47063 * 60.00065 * 1 2 3 27 27 H 1.08996 * 109.46975 * 239.99935 * 2 1 3 28 28 H 1.08998 * 109.47023 * 119.99407 * 2 1 3 29 29 H 1.09003 * 109.47782 * 264.84967 * 4 3 2 30 30 H 1.09003 * 109.47571 * 24.85214 * 4 3 2 31 31 H 1.09009 * 109.47650 * 144.84969 * 4 3 2 32 32 H 1.09001 * 109.62356 * 248.52828 * 10 9 7 33 33 H 1.08996 * 109.62271 * 9.10036 * 10 9 7 34 34 H 1.09003 * 109.64824 * 294.08255 * 11 10 9 35 35 H 1.08999 * 109.42409 * 173.94999 * 11 10 9 36 36 H 1.09005 * 109.46909 * 54.30342 * 13 12 11 37 37 H 1.08993 * 109.47392 * 174.29684 * 13 12 11 38 38 H 0.97002 * 119.99601 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.49818 * 303.14675 * 22 12 11 40 40 H 1.09001 * 109.49430 * 183.06160 * 22 12 11 41 41 H 1.08999 * 109.62680 * 350.89008 * 23 9 7 42 42 H 1.08994 * 109.63009 * 111.47667 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2429 2.0166 1.1673 6 8 2.1323 1.4162 2.2160 7 6 2.6342 3.4590 1.1696 8 8 3.7989 3.7719 1.0358 9 7 1.6934 4.4122 1.3204 10 6 2.0407 5.8380 1.2219 11 6 1.0759 6.5015 0.2265 12 7 -0.3078 6.2268 0.6365 13 6 -1.2607 6.9859 -0.1843 14 6 -1.0871 8.4597 0.0782 15 1 -0.3436 8.7985 0.7844 16 6 -1.8782 9.3755 -0.5825 17 7 -2.7840 8.9628 -1.4422 18 14 -1.6635 11.2022 -0.2567 19 1 -0.5865 11.4029 0.7459 20 1 -1.2985 11.8910 -1.5206 21 1 -2.9353 11.7649 0.2643 22 6 -0.6018 4.7883 0.5895 23 6 0.2932 4.0543 1.5938 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.3147 1.9774 -1.5372 30 1 1.6468 1.6257 -2.0497 31 1 2.0077 3.1265 -1.1633 32 1 1.9418 6.3073 2.2008 33 1 3.0654 5.9414 0.8651 34 1 1.2459 6.0994 -0.7722 35 1 1.2461 7.5781 0.2194 36 1 -1.0762 6.7804 -1.2388 37 1 -2.2777 6.6886 0.0711 38 1 -3.3403 9.6071 -1.9073 39 1 -0.4083 4.4100 -0.4144 40 1 -1.6482 4.6223 0.8458 41 1 0.1620 2.9780 1.4828 42 1 0.0295 4.3556 2.6076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601448620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:07 Heat of formation + Delta-G solvation = -51.172832 kcal Electronic energy + Delta-G solvation = -23437.972988 eV Core-core repulsion = 20032.660847 eV Total energy + Delta-G solvation = -3405.312141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97584 -39.01080 -37.57431 -36.21414 -34.57700 -32.47938 -31.62223 -30.94625 -28.57450 -27.11791 -26.02471 -25.01647 -23.37072 -22.52305 -21.61903 -20.16788 -18.82984 -17.74880 -17.15205 -16.61186 -16.34615 -15.68540 -15.07672 -14.81977 -14.79536 -14.55274 -14.11754 -13.94492 -13.78344 -13.62546 -13.30302 -12.98171 -12.86180 -12.55594 -12.37502 -12.21428 -12.05520 -11.55288 -11.34523 -11.31404 -11.22867 -10.93510 -10.86047 -10.66873 -10.61861 -9.95636 -9.57185 -9.32689 -9.08779 -8.70627 -8.51925 -7.43608 -6.11745 -4.13710 1.97796 2.06452 2.57499 3.21185 3.26186 3.34304 3.38563 4.04704 4.34346 4.65220 4.71764 4.79454 4.88125 5.08128 5.11663 5.20926 5.21778 5.27305 5.35322 5.41835 5.45592 5.50129 5.61195 5.69457 5.76577 5.87243 5.92794 6.08438 6.11692 6.24774 6.39200 6.54123 6.83204 7.12840 7.15833 7.22278 7.61816 7.67920 7.81052 7.92483 8.03528 8.39560 8.93808 9.51454 10.99081 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.004046 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.341310 B = 6919.007599 C = 7397.917075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.603 5.603 4 C 0.075 3.925 5 C 0.520 3.480 6 O -0.514 6.514 7 C 0.514 3.486 8 O -0.523 6.523 9 N -0.589 5.589 10 C 0.113 3.887 11 C 0.052 3.948 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.043 3.957 23 C 0.112 3.888 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.101 0.899 36 H -0.008 1.008 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.028 0.972 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -15.545 -0.017 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.338 5.338 4 C -0.068 4.068 5 C 0.302 3.698 6 O -0.389 6.389 7 C 0.296 3.704 8 O -0.398 6.398 9 N -0.323 5.323 10 C -0.008 4.008 11 C -0.077 4.077 12 N -0.261 5.261 13 C 0.070 3.930 14 C -0.549 4.549 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.087 4.087 23 C -0.011 4.011 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.044 0.956 35 H 0.119 0.881 36 H 0.010 0.990 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.846 -15.473 0.834 16.940 hybrid contribution -0.065 0.744 -0.857 1.137 sum 6.781 -14.729 -0.023 16.215 Atomic orbital electron populations 1.22159 0.95224 1.02613 1.02797 1.21559 0.94785 0.81311 1.03701 1.47892 1.65110 1.14772 1.06067 1.21914 1.02118 0.97941 0.84846 1.20365 0.76857 0.88205 0.84344 1.90785 1.50164 1.66926 1.30991 1.20126 0.86267 0.86184 0.77840 1.90778 1.17568 1.81642 1.49848 1.48284 1.08740 1.06965 1.68341 1.22126 0.99734 0.77676 1.01308 1.22440 0.88738 1.01941 0.94559 1.62084 1.02957 1.04200 1.56829 1.19735 0.90466 0.92978 0.89859 1.21172 1.19511 0.90322 1.23893 0.91674 1.24983 0.95134 0.99311 0.95060 1.69962 1.22048 1.34409 1.27281 0.86441 0.78111 0.84842 0.78035 1.19574 1.21093 1.20983 1.22382 0.99225 0.90626 0.96433 1.22006 0.79363 0.98835 1.00921 0.91170 0.92052 0.92129 0.89991 0.89458 0.91639 0.89935 0.91010 0.90191 0.89059 0.95551 0.88062 0.99028 0.94963 0.92894 0.95431 0.89723 0.90681 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.11 0.93 6.14 -4.04 -0.02 0.91 16 3 N -0.60 -6.73 2.87 -182.08 -0.52 -7.26 16 4 C 0.07 0.69 10.23 59.84 0.61 1.30 16 5 C 0.52 7.60 5.48 -11.58 -0.06 7.54 16 6 O -0.51 -8.68 16.65 5.50 0.09 -8.58 16 7 C 0.51 8.19 5.70 -11.59 -0.07 8.13 16 8 O -0.52 -9.53 16.57 5.50 0.09 -9.44 16 9 N -0.59 -8.98 3.00 -172.69 -0.52 -9.50 16 10 C 0.11 1.76 6.61 -3.37 -0.02 1.73 16 11 C 0.05 0.93 5.47 -3.47 -0.02 0.91 16 12 N -0.54 -10.52 4.62 -235.46 -1.09 -11.60 16 13 C 0.19 4.71 4.72 -4.97 -0.02 4.69 16 14 C -0.51 -13.53 8.41 -34.44 -0.29 -13.82 16 15 H 0.07 1.70 7.13 -52.49 -0.37 1.33 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -25.64 13.29 55.43 0.74 -24.91 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.04 0.69 5.62 -3.70 -0.02 0.66 16 23 C 0.11 1.58 6.52 -3.60 -0.02 1.55 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 28 H 0.09 0.85 7.36 -51.93 -0.38 0.46 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.55 8.03 -51.93 -0.42 0.14 16 31 H 0.07 0.78 6.99 -51.92 -0.36 0.42 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 1.93 6.67 -51.93 -0.35 1.59 16 36 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 37 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 41 H 0.07 0.97 6.37 -51.93 -0.33 0.64 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -31.76 343.72 -7.48 -39.24 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.77 Total: -3.06 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 0.34 Total: 14.10 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -1.39 Total: -53.27 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.18 Total: -18.02 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.76 -7.48 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601448620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.935 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds