Wall clock time and date at job start Tue Mar 31 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99649 * 2 1 4 4 N 1.34773 * 119.99902 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00281 * 355.30976 * 4 2 1 6 6 C 1.46503 * 119.99687 * 175.30821 * 4 2 1 7 7 C 1.50709 * 109.47063 * 89.99919 * 6 4 2 8 8 O 1.21280 * 119.99749 * 359.97438 * 7 6 4 9 9 N 1.34769 * 120.00133 * 179.97438 * 7 6 4 10 10 C 1.47083 * 120.88367 * 179.97438 * 9 7 6 11 11 C 1.53235 * 108.52088 * 231.20826 * 10 9 7 12 12 N 1.46898 * 109.34023 * 306.16686 * 11 10 9 13 13 C 1.46896 * 110.99995 * 187.25831 * 12 11 10 14 14 C 1.50704 * 109.47330 * 170.00365 * 13 12 11 15 15 H 1.08001 * 119.99647 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99829 * 179.72304 * 14 13 12 17 17 N 1.31514 * 120.00251 * 0.27470 * 16 14 13 18 18 Si 1.86798 * 119.99530 * 180.27260 * 16 14 13 19 19 H 1.48503 * 109.47404 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47239 * 120.00152 * 18 16 14 21 21 H 1.48506 * 109.47172 * 239.99932 * 18 16 14 22 22 C 1.46892 * 111.26911 * 63.10908 * 12 11 10 23 23 C 1.47081 * 120.88032 * 0.02562 * 9 7 6 24 24 H 1.09003 * 109.46499 * 185.21225 * 1 2 3 25 25 H 1.09001 * 109.47170 * 305.20977 * 1 2 3 26 26 H 1.09000 * 109.47073 * 65.20893 * 1 2 3 27 27 H 1.08996 * 109.46939 * 275.46388 * 5 4 2 28 28 H 1.08997 * 109.47009 * 35.46384 * 5 4 2 29 29 H 1.09002 * 109.47088 * 155.46754 * 5 4 2 30 30 H 1.08997 * 109.47494 * 330.00123 * 6 4 2 31 31 H 1.08994 * 109.47325 * 209.99748 * 6 4 2 32 32 H 1.09003 * 109.62385 * 111.49415 * 10 9 7 33 33 H 1.08997 * 109.78443 * 351.01405 * 10 9 7 34 34 H 1.09001 * 109.49046 * 186.20827 * 11 10 9 35 35 H 1.08999 * 109.49550 * 66.12851 * 11 10 9 36 36 H 1.08999 * 109.47621 * 49.99879 * 13 12 11 37 37 H 1.09007 * 109.46879 * 289.99831 * 13 12 11 38 38 H 0.96993 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.49723 * 56.84931 * 22 12 11 40 40 H 1.08999 * 109.49588 * 176.93701 * 22 12 11 41 41 H 1.09002 * 109.62626 * 248.50215 * 23 9 7 42 42 H 1.09000 * 109.63269 * 9.08051 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4521 -2.4338 0.1026 6 6 3.6423 -1.1692 -0.1043 7 6 4.2440 -1.1124 1.2763 8 8 3.5231 -1.0735 2.2508 9 7 5.5831 -1.1048 1.4279 10 6 6.1911 -1.0491 2.7661 11 6 7.2200 0.0862 2.7864 12 7 8.1690 -0.0974 1.6802 13 6 9.2708 0.8703 1.7658 14 6 10.3421 0.5010 0.7723 15 1 10.2171 -0.3662 0.1408 16 6 11.4795 1.2731 0.6660 17 7 11.6319 2.3288 1.4353 18 14 12.8039 0.8196 -0.5708 19 1 12.3947 -0.4026 -1.3085 20 1 12.9898 1.9382 -1.5295 21 1 14.0805 0.5621 0.1430 22 6 7.4932 -0.0120 0.3787 23 6 6.4754 -1.1508 0.2596 24 1 -0.3632 -1.0235 0.0934 25 1 -0.3633 0.5925 0.8396 26 1 -0.3633 0.4309 -0.9330 27 1 1.2593 -2.6576 1.1518 28 1 0.5055 -2.3529 -0.4316 29 1 2.0495 -3.2334 -0.3355 30 1 3.9670 -0.3013 -0.6781 31 1 3.9696 -2.0797 -0.6061 32 1 6.6859 -1.9958 2.9830 33 1 5.4210 -0.8589 3.5136 34 1 7.7586 0.0719 3.7339 35 1 6.7090 1.0423 2.6724 36 1 9.6887 0.8572 2.7724 37 1 8.8957 1.8688 1.5411 38 1 12.4322 2.8717 1.3607 39 1 6.9784 0.9454 0.2983 40 1 8.2300 -0.0975 -0.4200 41 1 6.9977 -2.1072 0.2352 42 1 5.8915 -1.0260 -0.6523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:55 Heat of formation + Delta-G solvation = -48.173113 kcal Electronic energy + Delta-G solvation = -22914.537188 eV Core-core repulsion = 19509.355125 eV Total energy + Delta-G solvation = -3405.182064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48508 -39.31700 -37.45751 -35.58412 -34.39913 -32.47435 -31.36750 -30.51095 -28.64356 -27.81103 -26.37444 -25.19389 -23.25559 -22.11391 -20.84320 -19.57429 -18.61114 -17.37868 -17.23226 -16.52560 -16.33141 -15.68024 -15.18584 -15.03389 -14.73753 -14.41810 -13.95058 -13.75248 -13.63388 -13.48533 -13.21078 -13.10030 -13.06868 -12.41222 -12.29384 -12.23172 -11.92910 -11.80686 -11.29043 -11.06655 -10.98001 -10.74329 -10.64835 -10.51620 -10.02962 -9.98855 -9.88153 -9.27058 -8.82654 -8.51306 -8.43405 -7.33030 -6.06447 -4.08632 2.39342 2.68435 2.70033 3.25503 3.28433 3.36011 3.39665 4.37628 4.38669 4.53650 4.73740 4.78435 4.83893 4.94666 5.12976 5.19655 5.22327 5.27167 5.30142 5.39592 5.42858 5.52490 5.59892 5.65448 5.75065 5.84721 6.02005 6.09956 6.30039 6.45525 6.47539 6.68351 7.10745 7.21880 7.29103 7.53198 7.73969 7.97998 8.01066 8.11747 8.26252 8.46954 8.98725 9.55910 11.04471 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030122 B = 0.003427 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.328802 B = 8168.333658 C = 8352.936654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.515 3.485 3 O -0.540 6.540 4 N -0.603 5.603 5 C 0.079 3.921 6 C 0.097 3.903 7 C 0.499 3.501 8 O -0.543 6.543 9 N -0.607 5.607 10 C 0.120 3.880 11 C 0.040 3.960 12 N -0.535 5.535 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.048 3.952 23 C 0.109 3.891 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.032 0.968 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.026 0.974 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.044 -10.855 -4.771 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.304 3.696 3 O -0.416 6.416 4 N -0.337 5.337 5 C -0.064 4.064 6 C -0.030 4.030 7 C 0.286 3.714 8 O -0.421 6.421 9 N -0.341 5.341 10 C -0.003 4.003 11 C -0.089 4.089 12 N -0.260 5.260 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.081 4.081 23 C -0.014 4.014 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.795 -10.594 -4.173 22.836 hybrid contribution 0.653 0.648 -0.618 1.109 sum -19.142 -9.945 -4.791 22.097 Atomic orbital electron populations 1.21962 0.91508 1.04628 1.05214 1.20827 0.90736 0.82932 0.75069 1.90750 1.70608 1.31098 1.49134 1.47501 1.05497 1.07115 1.73583 1.21894 0.97131 0.84898 1.02455 1.21380 0.80937 1.05346 0.95290 1.21058 0.82077 0.76363 0.91940 1.90648 1.60028 1.50364 1.41060 1.48247 1.05034 1.72325 1.08498 1.21723 0.95440 0.99502 0.83632 1.22404 0.93732 0.95903 0.96868 1.62089 1.09594 1.54206 1.00126 1.19739 0.87223 0.88145 0.98112 1.21168 1.02293 1.11278 1.20015 0.91731 1.25007 0.98392 0.94977 0.96273 1.69970 1.28022 1.16498 1.39151 0.86436 0.81593 0.78324 0.81014 1.19628 1.21116 1.21018 1.22326 0.95730 0.95152 0.94874 1.22027 0.91727 1.00873 0.86796 0.90013 0.88701 0.88766 0.92010 0.90559 0.90818 0.86945 0.87482 0.90956 0.89590 0.90062 0.95490 0.95011 0.99049 0.92909 0.95545 0.88349 0.90356 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.01 36.01 0.36 -0.97 16 2 C 0.52 6.56 7.77 -10.98 -0.09 6.47 16 3 O -0.54 -9.54 16.73 5.56 0.09 -9.45 16 4 N -0.60 -6.61 2.36 -182.95 -0.43 -7.04 16 5 C 0.08 0.53 10.01 59.85 0.60 1.13 16 6 C 0.10 1.12 4.26 -5.19 -0.02 1.10 16 7 C 0.50 7.69 7.78 -10.98 -0.09 7.60 16 8 O -0.54 -10.10 15.89 5.56 0.09 -10.01 16 9 N -0.61 -9.32 3.01 -172.48 -0.52 -9.84 16 10 C 0.12 1.93 6.59 -3.60 -0.02 1.90 16 11 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 12 N -0.53 -11.25 4.62 -235.80 -1.09 -12.34 16 13 C 0.19 4.96 4.72 -4.98 -0.02 4.93 16 14 C -0.51 -13.89 8.41 -34.44 -0.29 -14.18 16 15 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.05 0.89 5.45 -3.72 -0.02 0.87 16 23 C 0.11 1.52 6.50 -3.62 -0.02 1.49 16 24 H 0.08 0.40 5.49 -51.93 -0.29 0.12 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.30 6.14 -51.93 -0.32 -0.01 16 29 H 0.07 0.37 7.83 -51.93 -0.41 -0.04 16 30 H 0.11 1.39 7.01 -51.93 -0.36 1.03 16 31 H 0.11 0.84 7.71 -51.93 -0.40 0.44 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.41 7.07 -51.93 -0.37 1.04 16 34 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 1.89 6.67 -51.93 -0.35 1.54 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 0.84 6.02 -51.93 -0.31 0.53 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -35.94 339.78 -7.28 -43.21 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.52 Total: -2.58 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 0.27 Total: 12.51 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -1.30 Total: -54.98 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.18 Total: -19.46 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.94 -7.28 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.958 kcal (2) G-P(sol) polarization free energy of solvation -35.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds