Wall clock time and date at job start Tue Mar 31 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99649 * 2 1 4 4 N 1.34773 * 119.99902 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00281 * 355.30976 * 4 2 1 6 6 C 1.46503 * 119.99687 * 175.30821 * 4 2 1 7 7 C 1.50709 * 109.47063 * 89.99919 * 6 4 2 8 8 O 1.21280 * 119.99749 * 359.97438 * 7 6 4 9 9 N 1.34769 * 120.00133 * 179.97438 * 7 6 4 10 10 C 1.47083 * 120.88367 * 179.97438 * 9 7 6 11 11 C 1.53235 * 108.52088 * 231.20826 * 10 9 7 12 12 N 1.46898 * 109.34023 * 306.16686 * 11 10 9 13 13 C 1.46896 * 110.99995 * 187.25831 * 12 11 10 14 14 C 1.50704 * 109.47330 * 170.00365 * 13 12 11 15 15 H 1.08001 * 119.99647 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99829 * 179.72304 * 14 13 12 17 17 N 1.31514 * 120.00251 * 0.27470 * 16 14 13 18 18 Si 1.86798 * 119.99530 * 180.27260 * 16 14 13 19 19 H 1.48503 * 109.47404 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47239 * 120.00152 * 18 16 14 21 21 H 1.48506 * 109.47172 * 239.99932 * 18 16 14 22 22 C 1.46892 * 111.26911 * 63.10908 * 12 11 10 23 23 C 1.47081 * 120.88032 * 0.02562 * 9 7 6 24 24 H 1.09003 * 109.46499 * 185.21225 * 1 2 3 25 25 H 1.09001 * 109.47170 * 305.20977 * 1 2 3 26 26 H 1.09000 * 109.47073 * 65.20893 * 1 2 3 27 27 H 1.08996 * 109.46939 * 275.46388 * 5 4 2 28 28 H 1.08997 * 109.47009 * 35.46384 * 5 4 2 29 29 H 1.09002 * 109.47088 * 155.46754 * 5 4 2 30 30 H 1.08997 * 109.47494 * 330.00123 * 6 4 2 31 31 H 1.08994 * 109.47325 * 209.99748 * 6 4 2 32 32 H 1.09003 * 109.62385 * 111.49415 * 10 9 7 33 33 H 1.08997 * 109.78443 * 351.01405 * 10 9 7 34 34 H 1.09001 * 109.49046 * 186.20827 * 11 10 9 35 35 H 1.08999 * 109.49550 * 66.12851 * 11 10 9 36 36 H 1.08999 * 109.47621 * 49.99879 * 13 12 11 37 37 H 1.09007 * 109.46879 * 289.99831 * 13 12 11 38 38 H 0.96993 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.49723 * 56.84931 * 22 12 11 40 40 H 1.08999 * 109.49588 * 176.93701 * 22 12 11 41 41 H 1.09002 * 109.62626 * 248.50215 * 23 9 7 42 42 H 1.09000 * 109.63269 * 9.08051 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4521 -2.4338 0.1026 6 6 3.6423 -1.1692 -0.1043 7 6 4.2440 -1.1124 1.2763 8 8 3.5231 -1.0735 2.2508 9 7 5.5831 -1.1048 1.4279 10 6 6.1911 -1.0491 2.7661 11 6 7.2200 0.0862 2.7864 12 7 8.1690 -0.0974 1.6802 13 6 9.2708 0.8703 1.7658 14 6 10.3421 0.5010 0.7723 15 1 10.2171 -0.3662 0.1408 16 6 11.4795 1.2731 0.6660 17 7 11.6319 2.3288 1.4353 18 14 12.8039 0.8196 -0.5708 19 1 12.3947 -0.4026 -1.3085 20 1 12.9898 1.9382 -1.5295 21 1 14.0805 0.5621 0.1430 22 6 7.4932 -0.0120 0.3787 23 6 6.4754 -1.1508 0.2596 24 1 -0.3632 -1.0235 0.0934 25 1 -0.3633 0.5925 0.8396 26 1 -0.3633 0.4309 -0.9330 27 1 1.2593 -2.6576 1.1518 28 1 0.5055 -2.3529 -0.4316 29 1 2.0495 -3.2334 -0.3355 30 1 3.9670 -0.3013 -0.6781 31 1 3.9696 -2.0797 -0.6061 32 1 6.6859 -1.9958 2.9830 33 1 5.4210 -0.8589 3.5136 34 1 7.7586 0.0719 3.7339 35 1 6.7090 1.0423 2.6724 36 1 9.6887 0.8572 2.7724 37 1 8.8957 1.8688 1.5411 38 1 12.4322 2.8717 1.3607 39 1 6.9784 0.9454 0.2983 40 1 8.2300 -0.0975 -0.4200 41 1 6.9977 -2.1072 0.2352 42 1 5.8915 -1.0260 -0.6523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:54 Heat of formation + Delta-G solvation = -75.342607 kcal Electronic energy + Delta-G solvation = -22915.715346 eV Core-core repulsion = 19509.355125 eV Total energy + Delta-G solvation = -3406.360221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58196 -40.45941 -38.92837 -36.53509 -35.99471 -34.44286 -32.58987 -31.52046 -30.12121 -28.88762 -27.46885 -26.61004 -24.68028 -23.88434 -22.30255 -20.64270 -19.77417 -18.53241 -18.50553 -18.12892 -17.46671 -16.85190 -16.54300 -16.36944 -16.08653 -16.04916 -15.50391 -15.33440 -14.73624 -14.52380 -14.31512 -14.14012 -13.93533 -13.72258 -13.56505 -13.24682 -13.06211 -12.98748 -12.76894 -12.62793 -12.52980 -12.41167 -12.31855 -12.13402 -11.80247 -11.28865 -11.17274 -10.98764 -10.63798 -9.81482 -9.74964 -9.12086 -8.21067 -6.32004 1.41709 1.43505 1.44104 1.53677 1.57748 1.83381 2.19265 2.40899 3.11130 3.18860 3.44671 3.68026 3.94464 4.00217 4.12293 4.19412 4.22509 4.28122 4.32060 4.39482 4.42864 4.50661 4.62041 4.68415 4.71532 4.79556 4.90307 4.93920 4.98721 5.09974 5.16117 5.18616 5.30693 5.44376 5.62894 5.99780 6.18017 6.30585 6.37636 6.51240 6.84176 7.02065 7.12384 7.38294 8.90921 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030122 B = 0.003427 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.328802 B = 8168.333658 C = 8352.936654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.604 6.604 4 N -0.603 5.603 5 C 0.072 3.928 6 C 0.096 3.904 7 C 0.495 3.505 8 O -0.580 6.580 9 N -0.611 5.611 10 C 0.129 3.871 11 C 0.042 3.958 12 N -0.533 5.533 13 C 0.206 3.794 14 C -0.519 4.519 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.255 1.255 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.046 3.954 23 C 0.120 3.880 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.005 0.995 36 H 0.004 0.996 37 H -0.046 1.046 38 H 0.264 0.736 39 H 0.005 0.995 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.138 -13.831 -6.967 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.292 3.708 3 O -0.485 6.485 4 N -0.335 5.335 5 C -0.069 4.069 6 C -0.030 4.030 7 C 0.283 3.717 8 O -0.460 6.460 9 N -0.345 5.345 10 C 0.006 3.994 11 C -0.087 4.087 12 N -0.258 5.258 13 C 0.080 3.920 14 C -0.557 4.557 15 H 0.092 0.908 16 C -0.200 4.200 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.178 1.178 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.083 4.083 23 C -0.002 4.002 24 H 0.132 0.868 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.172 0.828 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.023 0.977 36 H 0.022 0.978 37 H -0.028 1.028 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.926 -13.637 -6.385 25.781 hybrid contribution 0.945 1.587 0.128 1.852 sum -19.982 -12.049 -6.258 24.158 Atomic orbital electron populations 1.22003 0.87779 1.06832 1.05915 1.21798 0.92742 0.82506 0.73769 1.90716 1.72167 1.33403 1.52208 1.47749 1.05418 1.08219 1.72108 1.22199 0.98688 0.83464 1.02594 1.21530 0.81591 1.07203 0.92708 1.21824 0.81623 0.75044 0.93191 1.90629 1.60744 1.51962 1.42713 1.48360 1.05540 1.72177 1.08386 1.21552 0.94470 0.98781 0.84592 1.22438 0.93812 0.96231 0.96201 1.62049 1.09650 1.51971 1.02146 1.19404 0.88741 0.87486 0.96343 1.21486 1.02635 1.11472 1.20155 0.90796 1.26007 1.01033 0.94714 0.98290 1.70117 1.28935 1.17813 1.41078 0.85254 0.78046 0.78566 0.78263 1.17815 1.20771 1.20731 1.22415 0.96422 0.96399 0.93090 1.22078 0.90887 0.99493 0.87767 0.86803 0.89101 0.87089 0.93040 0.87409 0.88428 0.87813 0.82752 0.89251 0.89972 0.90000 0.97702 0.97763 1.02798 0.92758 0.97628 0.88987 0.88309 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.01 71.24 0.71 -1.47 16 2 C 0.50 12.21 7.77 87.66 0.68 12.89 16 3 O -0.60 -21.78 16.73 -3.03 -0.05 -21.83 16 4 N -0.60 -11.76 2.36 -851.13 -2.01 -13.77 16 5 C 0.07 0.68 10.01 127.77 1.28 1.96 16 6 C 0.10 1.98 4.26 85.64 0.36 2.35 16 7 C 0.49 14.54 7.78 87.66 0.68 15.22 16 8 O -0.58 -21.31 15.89 -3.03 -0.05 -21.36 16 9 N -0.61 -17.88 3.01 -818.01 -2.46 -20.35 16 10 C 0.13 4.10 6.59 86.35 0.57 4.67 16 11 C 0.04 1.63 5.62 86.38 0.49 2.12 16 12 N -0.53 -22.90 4.62 -899.93 -4.16 -27.05 16 13 C 0.21 11.13 4.72 85.56 0.40 11.53 16 14 C -0.52 -28.72 8.41 25.60 0.22 -28.51 16 15 H 0.07 3.87 7.13 -2.91 -0.02 3.85 16 16 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 17 N -0.94 -56.94 13.29 21.45 0.28 -56.66 16 18 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 19 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 C 0.05 1.67 5.45 86.37 0.47 2.15 16 23 C 0.12 3.05 6.50 86.34 0.56 3.61 16 24 H 0.11 0.69 5.49 -2.39 -0.01 0.68 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.35 6.14 -2.39 -0.01 0.33 16 29 H 0.10 0.50 7.83 -2.39 -0.02 0.48 16 30 H 0.10 2.39 7.01 -2.39 -0.02 2.38 16 31 H 0.16 1.66 7.71 -2.39 -0.02 1.64 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 33 H 0.08 2.70 7.07 -2.39 -0.02 2.69 16 34 H 0.08 3.08 7.99 -2.39 -0.02 3.06 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.00 0.25 7.97 -2.39 -0.02 0.23 16 37 H -0.05 -2.75 8.12 -2.38 -0.02 -2.77 16 38 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.09 3.49 6.67 -2.39 -0.02 3.47 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.12 2.09 6.02 -2.39 -0.01 2.08 16 Total: -1.00 -82.93 339.78 1.48 -81.46 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.01 Total: 7.38 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: 6.89 Total: 26.82 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -8.35 Total: -117.83 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.10 Total: -43.19 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -82.93 1.48 -81.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.115 kcal (2) G-P(sol) polarization free energy of solvation -82.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds