Wall clock time and date at job start Tue Mar 31 2020 03:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00082 * 2 1 4 4 C 1.52994 * 109.47029 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47515 * 67.44575 * 4 3 2 6 6 C 1.46902 * 110.99952 * 293.89090 * 5 4 3 7 7 C 1.50693 * 109.46767 * 300.46504 * 6 5 4 8 8 H 1.08001 * 120.00332 * 4.62782 * 7 6 5 9 9 C 1.37886 * 119.99898 * 184.61754 * 7 6 5 10 10 N 1.31511 * 119.99596 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47303 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47327 * 120.00154 * 11 9 7 14 14 H 1.48500 * 109.47406 * 240.00306 * 11 9 7 15 15 C 1.46902 * 110.99631 * 57.84375 * 5 4 3 16 16 C 1.52997 * 109.47427 * 77.90535 * 15 5 4 17 17 H 1.08998 * 109.47079 * 54.05348 * 16 15 5 18 18 O 1.42901 * 109.47035 * 294.04994 * 16 15 5 19 19 C 1.53001 * 109.47392 * 174.05017 * 16 15 5 20 20 N 1.46496 * 109.47321 * 184.99950 * 19 16 15 21 21 C 1.34944 * 126.03650 * 124.95529 * 20 19 16 22 22 C 1.35316 * 107.74858 * 180.02562 * 21 20 19 23 23 C 1.39870 * 107.91890 * 359.97438 * 22 21 20 24 24 N 1.30842 * 108.20440 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47401 * 300.00799 * 1 2 3 26 26 H 1.09007 * 109.46736 * 60.00521 * 1 2 3 27 27 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47628 * 59.99233 * 3 2 1 29 29 H 1.09008 * 109.46929 * 299.99427 * 3 2 1 30 30 H 1.09004 * 109.47462 * 307.44702 * 4 3 2 31 31 H 1.09005 * 109.47082 * 187.44798 * 4 3 2 32 32 H 1.08992 * 109.46988 * 60.47013 * 6 5 4 33 33 H 1.09003 * 109.46687 * 180.47161 * 6 5 4 34 34 H 0.97004 * 119.99535 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47527 * 317.90379 * 15 5 4 36 36 H 1.09008 * 109.46763 * 197.90664 * 15 5 4 37 37 H 0.96689 * 114.00105 * 300.00122 * 18 16 15 38 38 H 1.08999 * 109.46974 * 64.99880 * 19 16 15 39 39 H 1.08994 * 109.47241 * 305.00399 * 19 16 15 40 40 H 1.08008 * 126.12919 * 0.03256 * 21 20 19 41 41 H 1.07997 * 126.04278 * 180.26071 * 22 21 20 42 42 H 1.08004 * 125.90466 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9822 0.6161 -1.2781 6 6 3.5231 -0.7714 -1.4265 7 6 4.0723 -1.6055 -0.2980 8 1 4.6371 -1.1371 0.4945 9 6 3.8535 -2.9667 -0.2770 10 7 3.1659 -3.5371 -1.2421 11 14 4.5336 -4.0006 1.1222 12 1 5.2642 -3.1259 2.0743 13 1 3.4149 -4.6747 1.8288 14 1 5.4620 -5.0230 0.5764 15 6 3.5339 1.4425 -2.4068 16 6 4.4334 2.6744 -2.5260 17 1 5.4749 2.3591 -2.5880 18 8 4.2551 3.5071 -1.3784 19 6 4.0617 3.4573 -3.7869 20 7 4.9989 4.5690 -3.9654 21 6 5.7383 4.8149 -5.0671 22 6 6.4706 5.9283 -4.8325 23 6 6.1678 6.3787 -3.5434 24 7 5.2858 5.5646 -3.0226 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.8480 0.5331 0.8168 31 1 3.9781 2.1718 0.1339 32 1 2.4338 -0.7983 -1.4015 33 1 3.8748 -1.1707 -2.3778 34 1 3.0123 -4.4948 -1.2276 35 1 2.5045 1.7592 -2.2390 36 1 3.5898 0.8614 -3.3274 37 1 3.3498 3.8253 -1.2602 38 1 3.0492 3.8482 -3.6866 39 1 4.1121 2.7970 -4.6526 40 1 5.7446 4.2281 -5.9739 41 1 7.1627 6.3905 -5.5208 42 1 6.5892 7.2484 -3.0611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610391826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:01 Heat of formation + Delta-G solvation = -18.068972 kcal Electronic energy + Delta-G solvation = -23167.843102 eV Core-core repulsion = 19763.966452 eV Total energy + Delta-G solvation = -3403.876650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92270 -40.12201 -38.36914 -36.69456 -34.48033 -34.13043 -31.31980 -30.73386 -30.30856 -28.36069 -27.09114 -25.94899 -24.39998 -23.19872 -21.87376 -21.51091 -21.09976 -18.46531 -18.10779 -17.76645 -17.36070 -17.04219 -16.67097 -16.49581 -15.98554 -15.74536 -15.34063 -15.04939 -14.82346 -14.53428 -14.22018 -13.90277 -13.55547 -13.50209 -13.11427 -12.99153 -12.85090 -12.67210 -12.58174 -12.51685 -12.42948 -11.99266 -11.95786 -11.75662 -11.42303 -11.21639 -10.69381 -10.57706 -10.24478 -10.15985 -9.39384 -8.68166 -8.07221 -6.09173 1.11298 1.40109 1.40943 1.53098 1.70841 2.06800 2.47020 3.05414 3.24775 3.28239 3.49386 3.83999 3.96803 4.07145 4.07859 4.18742 4.29597 4.34545 4.40305 4.45088 4.54087 4.60409 4.61507 4.72446 4.82321 4.85407 4.94963 4.98672 5.09613 5.23576 5.32339 5.48593 5.72390 5.77104 5.86080 6.21257 6.24285 6.48373 6.50883 6.82438 6.89608 6.92238 7.04799 7.55114 9.04674 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.004038 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.471634 B = 6931.694168 C = 7505.886177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.027 3.973 4 C 0.058 3.942 5 N -0.540 5.540 6 C 0.200 3.800 7 C -0.494 4.494 8 H 0.048 0.952 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.952 3.048 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.023 3.977 16 C 0.123 3.877 17 H 0.078 0.922 18 O -0.548 6.548 19 C 0.103 3.897 20 N -0.375 5.375 21 C 0.043 3.957 22 C -0.288 4.288 23 C 0.020 3.980 24 N -0.311 5.311 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.017 0.983 33 H -0.012 1.012 34 H 0.257 0.743 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.376 0.624 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.202 0.798 41 H 0.165 0.835 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 17.933 -7.020 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.308 6.308 3 C -0.051 4.051 4 C -0.070 4.070 5 N -0.263 5.263 6 C 0.074 3.926 7 C -0.532 4.532 8 H 0.066 0.934 9 C -0.192 4.192 10 N -0.576 5.576 11 Si 0.779 3.221 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.207 1.207 15 C -0.107 4.107 16 C 0.063 3.937 17 H 0.096 0.904 18 O -0.353 6.353 19 C -0.018 4.018 20 N -0.158 5.158 21 C -0.103 4.103 22 C -0.317 4.317 23 C -0.166 4.166 24 N -0.133 5.133 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.034 0.966 33 H 0.006 0.994 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.224 0.776 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.219 0.781 41 H 0.183 0.817 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.197 17.082 -5.963 18.133 hybrid contribution -0.829 -0.636 -0.166 1.057 sum -2.025 16.447 -6.128 17.668 Atomic orbital electron populations 1.22777 0.81925 1.02199 1.00241 1.88435 1.19548 1.27941 1.94854 1.23370 0.96169 0.85145 1.00385 1.22409 0.90952 1.00887 0.92718 1.62058 1.59706 1.02927 1.01568 1.19661 0.94908 0.83626 0.94388 1.21369 1.31699 0.92390 1.07786 0.93372 1.25628 0.96152 0.99128 0.98318 1.70074 1.42547 1.10694 1.34284 0.85590 0.78004 0.78704 0.79803 1.19513 1.20844 1.20737 1.22788 0.97265 0.95100 0.95507 1.21939 0.99629 0.87679 0.84493 0.90354 1.86668 1.34553 1.68261 1.45838 1.22563 0.92327 0.85894 1.01065 1.48783 1.34097 1.21818 1.11105 1.23210 0.94434 0.99236 0.93395 1.21834 1.09476 1.01216 0.99197 1.24414 0.96893 0.99964 0.95335 1.77482 1.20125 1.00716 1.14940 0.92993 0.93548 0.91217 0.92315 0.92304 0.93021 0.87022 0.96556 0.99445 0.93369 0.92881 0.90955 0.77571 0.88096 0.85337 0.78091 0.81735 0.78519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -16.00 7.33 -148.98 -1.09 -17.10 16 3 C 0.03 0.89 5.79 71.98 0.42 1.31 16 4 C 0.06 2.22 5.39 86.30 0.47 2.68 16 5 N -0.54 -22.49 4.67 -900.79 -4.21 -26.70 16 6 C 0.20 10.47 4.13 85.55 0.35 10.82 16 7 C -0.49 -28.57 8.35 25.60 0.21 -28.35 16 8 H 0.05 2.82 6.49 -2.91 -0.02 2.80 16 9 C 0.00 0.26 5.46 84.66 0.46 0.72 16 10 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 11 Si 0.95 46.34 29.54 68.60 2.03 48.36 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 15 C 0.02 0.70 4.67 86.30 0.40 1.10 16 16 C 0.12 3.24 3.41 30.59 0.10 3.35 16 17 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 18 O -0.55 -14.98 9.65 -148.98 -1.44 -16.42 16 19 C 0.10 1.97 6.18 86.38 0.53 2.51 16 20 N -0.38 -8.56 3.68 -348.07 -1.28 -9.84 16 21 C 0.04 0.80 11.45 83.54 0.96 1.76 16 22 C -0.29 -5.44 10.80 21.99 0.24 -5.20 16 23 C 0.02 0.44 12.03 85.24 1.02 1.47 16 24 N -0.31 -8.40 11.56 -57.02 -0.66 -9.06 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.65 5.68 -2.38 -0.01 1.64 16 30 H 0.05 2.33 6.17 -2.38 -0.01 2.32 16 31 H 0.11 3.77 5.66 -2.38 -0.01 3.76 16 32 H 0.02 0.93 5.29 -2.39 -0.01 0.92 16 33 H -0.01 -0.73 7.98 -2.39 -0.02 -0.74 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.05 1.47 5.36 -2.39 -0.01 1.45 16 36 H 0.07 2.25 7.80 -2.38 -0.02 2.23 16 37 H 0.38 7.84 9.04 -74.06 -0.67 7.17 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.13 1.80 8.07 -2.39 -0.02 1.78 16 40 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.20 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -75.65 338.57 0.41 -75.25 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.35 Total: 18.07 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 6.42 Total: -5.81 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -5.86 Total: -102.35 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -2.53 Total: -33.52 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -75.65 0.41 -75.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610391826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.178 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds