Wall clock time and date at job start Tue Mar 31 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47246 * 2 1 4 4 C 1.34779 * 120.00488 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99582 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00272 * 179.97438 * 4 3 2 7 7 N 1.46509 * 109.47308 * 179.97438 * 6 4 3 8 8 C 1.34773 * 119.99865 * 180.02562 * 7 6 4 9 9 O 1.21585 * 120.00642 * 5.07018 * 8 7 6 10 10 N 1.34775 * 119.99548 * 185.07796 * 8 7 6 11 11 C 1.46924 * 120.63159 * 174.96204 * 10 8 7 12 12 C 1.53200 * 108.89456 * 233.55608 * 11 10 8 13 13 C 1.53074 * 109.29270 * 305.57637 * 12 11 10 14 14 C 1.50697 * 109.43927 * 181.23706 * 13 12 11 15 15 H 1.08005 * 119.99998 * 239.79855 * 14 13 12 16 16 C 1.37872 * 120.00220 * 59.79272 * 14 13 12 17 17 N 1.31509 * 119.99991 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47490 * 90.00214 * 18 16 14 20 20 H 1.48507 * 109.47351 * 210.00230 * 18 16 14 21 21 H 1.48501 * 109.47371 * 330.00209 * 18 16 14 22 22 C 1.53041 * 109.65925 * 61.15251 * 13 12 11 23 23 C 1.46925 * 120.63097 * 354.97832 * 10 8 7 24 24 H 1.08996 * 109.47084 * 60.00147 * 1 2 3 25 25 H 1.08994 * 109.46653 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46439 * 300.00077 * 1 2 3 27 27 H 1.08998 * 109.47345 * 239.99896 * 2 1 3 28 28 H 1.08998 * 109.47781 * 120.00102 * 2 1 3 29 29 H 0.96998 * 120.00128 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.47145 * 59.99823 * 6 4 3 31 31 H 1.09003 * 109.47369 * 299.99974 * 6 4 3 32 32 H 0.97000 * 119.99583 * 0.02562 * 7 6 4 33 33 H 1.09003 * 109.58820 * 353.41568 * 11 10 8 34 34 H 1.09006 * 109.59033 * 113.69984 * 11 10 8 35 35 H 1.08999 * 109.49598 * 65.38684 * 12 11 10 36 36 H 1.09001 * 109.49618 * 185.48286 * 12 11 10 37 37 H 1.08997 * 109.34585 * 301.12589 * 13 12 11 38 38 H 0.97005 * 120.00365 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.49614 * 178.74639 * 22 13 12 40 40 H 1.08998 * 109.52116 * 58.66541 * 22 13 12 41 41 H 1.08998 * 109.59207 * 246.15572 * 23 10 8 42 42 H 1.09002 * 109.59022 * 6.44498 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6276 -0.0005 5 8 4.1316 0.7057 -0.0005 6 6 3.8458 3.0483 -0.0011 7 7 5.3108 3.0484 -0.0010 8 6 5.9846 4.2156 -0.0009 9 8 5.3803 5.2665 0.0921 10 7 7.3284 4.2179 -0.1041 11 6 8.0685 5.4821 -0.2163 12 6 8.9701 5.4211 -1.4533 13 6 9.8564 4.1757 -1.3722 14 6 10.7662 4.1285 -2.5727 15 1 10.7239 3.2881 -3.2497 16 6 11.6526 5.1583 -2.8068 17 7 11.7045 6.1815 -1.9823 18 14 12.7808 5.0994 -4.2944 19 1 12.1096 5.7458 -5.4507 20 1 14.0423 5.8206 -3.9879 21 1 13.0876 3.6851 -4.6274 22 6 8.9803 2.9211 -1.3468 23 6 8.0811 2.9561 -0.1070 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8935 -0.5138 0.8899 29 1 1.3881 2.1185 -0.0004 30 1 3.4827 3.5624 0.8889 31 1 3.4821 3.5619 -0.8911 32 1 5.7958 2.2083 -0.0010 33 1 7.3657 6.3093 -0.3168 34 1 8.6796 5.6282 0.6744 35 1 8.3536 5.3688 -2.3507 36 1 9.5951 6.3133 -1.4923 37 1 10.4565 4.2181 -0.4633 38 1 12.3283 6.9059 -2.1468 39 1 9.6144 2.0353 -1.3115 40 1 8.3620 2.8904 -2.2439 41 1 8.6953 2.8948 0.7915 42 1 7.3867 2.1163 -0.1328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611622911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:25 Heat of formation + Delta-G solvation = -70.260994 kcal Electronic energy + Delta-G solvation = -22465.445447 eV Core-core repulsion = 19059.305582 eV Total energy + Delta-G solvation = -3406.139866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38667 -39.50317 -36.90951 -35.74128 -34.30538 -33.45278 -31.35337 -30.93734 -30.08628 -27.63063 -25.86900 -23.34917 -22.87779 -22.13115 -20.97579 -20.17777 -19.10188 -17.95341 -16.78251 -16.53390 -16.24383 -16.22053 -15.58176 -15.24243 -14.57537 -14.41990 -14.29899 -13.71222 -13.45721 -13.06940 -12.98705 -12.92818 -12.67965 -12.40714 -12.28129 -12.12108 -11.87367 -11.76303 -11.08954 -10.90968 -10.62972 -10.38368 -10.23874 -10.02670 -9.80934 -9.51585 -9.49890 -9.15472 -9.03599 -8.85527 -8.33452 -7.86465 -5.98595 -4.05087 2.28593 2.55477 3.20950 3.31078 3.38047 3.40907 3.55536 4.24730 4.36412 4.44078 4.60656 4.65658 4.90308 5.22423 5.22660 5.31026 5.37439 5.47299 5.47551 5.59634 5.83542 5.89047 6.01574 6.10056 6.30595 6.45729 6.50702 6.55711 6.67395 6.86327 7.02391 7.08061 7.18515 7.27788 7.52955 7.74533 7.82298 7.97149 8.09704 8.31961 8.44228 8.92843 8.98250 9.59732 11.06784 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032313 B = 0.003118 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.329396 B = 8976.660419 C = 9448.633253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.730 5.730 4 C 0.509 3.491 5 O -0.534 6.534 6 C 0.122 3.878 7 N -0.743 5.743 8 C 0.708 3.292 9 O -0.604 6.604 10 N -0.615 5.615 11 C 0.127 3.873 12 C -0.123 4.123 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.123 4.123 23 C 0.111 3.889 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.404 0.596 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.407 0.593 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.104 0.896 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 -9.199 5.376 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.383 5.383 4 C 0.295 3.705 5 O -0.411 6.411 6 C -0.006 4.006 7 N -0.406 5.406 8 C 0.410 3.590 9 O -0.483 6.483 10 N -0.351 5.351 11 C 0.005 3.995 12 C -0.162 4.162 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.161 4.161 23 C -0.013 4.013 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.238 0.762 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.247 0.753 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.656 -8.956 5.459 22.279 hybrid contribution 0.506 -0.116 -0.866 1.009 sum -19.150 -9.071 4.593 21.682 Atomic orbital electron populations 1.22010 0.94266 1.03361 1.02665 1.21328 0.94333 0.82678 1.02650 1.45942 1.06901 1.09323 1.76163 1.20710 0.82552 0.91555 0.75663 1.90714 1.55162 1.46158 1.49026 1.20773 0.82330 0.92954 1.04592 1.44948 1.05095 1.08900 1.81667 1.15734 0.82024 0.83312 0.77930 1.90857 1.67849 1.30569 1.59074 1.47423 1.03405 1.08842 1.75419 1.21789 0.94149 0.83532 1.00030 1.22042 0.96544 1.04176 0.93415 1.18635 0.91991 0.88871 0.97483 1.21192 1.18904 1.05341 1.09600 0.92756 1.24962 0.97103 0.95535 0.96413 1.69844 1.37131 1.09244 1.36714 0.86620 0.80281 0.78050 0.83177 1.20771 1.21272 1.20006 1.22004 0.97690 1.01225 0.95213 1.21760 0.94738 0.84486 1.00266 0.91828 0.90693 0.91868 0.91298 0.91340 0.76161 0.88625 0.88697 0.75298 0.90571 0.92500 0.94390 0.87771 0.95453 0.92975 0.92101 0.92889 0.91797 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.03 37.16 0.37 -0.25 16 2 C 0.11 0.75 6.39 -4.04 -0.03 0.72 16 3 N -0.73 -5.29 5.56 -60.30 -0.33 -5.62 16 4 C 0.51 5.55 7.90 -10.99 -0.09 5.46 16 5 O -0.53 -7.78 15.67 5.56 0.09 -7.70 16 6 C 0.12 1.39 6.16 -5.19 -0.03 1.36 16 7 N -0.74 -11.17 5.44 -66.41 -0.36 -11.53 16 8 C 0.71 13.16 8.30 -86.92 -0.72 12.44 16 9 O -0.60 -12.73 15.79 5.29 0.08 -12.65 16 10 N -0.61 -11.68 2.97 -178.49 -0.53 -12.21 16 11 C 0.13 2.62 6.41 -3.71 -0.02 2.59 16 12 C -0.12 -2.90 5.16 -26.59 -0.14 -3.03 16 13 C 0.05 1.18 2.06 -91.71 -0.19 0.99 16 14 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.99 11.30 55.43 0.63 -24.37 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 23 C 0.11 1.91 6.43 -3.71 -0.02 1.89 16 24 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.40 1.77 8.47 -40.82 -0.35 1.42 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 6.02 4.89 -40.82 -0.20 5.82 16 33 H 0.08 1.59 7.03 -51.93 -0.37 1.23 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.94 5.56 -51.93 -0.29 0.65 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -32.73 339.48 -8.28 -41.01 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.55 Total: 4.78 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.40 Total: 7.00 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.60 Total: -53.73 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.17 Total: -20.34 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.73 -8.28 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611622911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.246 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds