Wall clock time and date at job start Tue Mar 31 2020 02:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47246 * 2 1 4 4 C 1.34779 * 120.00488 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99582 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00272 * 179.97438 * 4 3 2 7 7 N 1.46509 * 109.47308 * 179.97438 * 6 4 3 8 8 C 1.34773 * 119.99865 * 180.02562 * 7 6 4 9 9 O 1.21585 * 120.00642 * 5.07018 * 8 7 6 10 10 N 1.34775 * 119.99548 * 185.07796 * 8 7 6 11 11 C 1.46924 * 120.63159 * 174.96204 * 10 8 7 12 12 C 1.53200 * 108.89456 * 233.55608 * 11 10 8 13 13 C 1.53074 * 109.29270 * 305.57637 * 12 11 10 14 14 C 1.50697 * 109.43927 * 181.23706 * 13 12 11 15 15 H 1.08005 * 119.99998 * 239.79855 * 14 13 12 16 16 C 1.37872 * 120.00220 * 59.79272 * 14 13 12 17 17 N 1.31509 * 119.99991 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47490 * 90.00214 * 18 16 14 20 20 H 1.48507 * 109.47351 * 210.00230 * 18 16 14 21 21 H 1.48501 * 109.47371 * 330.00209 * 18 16 14 22 22 C 1.53041 * 109.65925 * 61.15251 * 13 12 11 23 23 C 1.46925 * 120.63097 * 354.97832 * 10 8 7 24 24 H 1.08996 * 109.47084 * 60.00147 * 1 2 3 25 25 H 1.08994 * 109.46653 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46439 * 300.00077 * 1 2 3 27 27 H 1.08998 * 109.47345 * 239.99896 * 2 1 3 28 28 H 1.08998 * 109.47781 * 120.00102 * 2 1 3 29 29 H 0.96998 * 120.00128 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.47145 * 59.99823 * 6 4 3 31 31 H 1.09003 * 109.47369 * 299.99974 * 6 4 3 32 32 H 0.97000 * 119.99583 * 0.02562 * 7 6 4 33 33 H 1.09003 * 109.58820 * 353.41568 * 11 10 8 34 34 H 1.09006 * 109.59033 * 113.69984 * 11 10 8 35 35 H 1.08999 * 109.49598 * 65.38684 * 12 11 10 36 36 H 1.09001 * 109.49618 * 185.48286 * 12 11 10 37 37 H 1.08997 * 109.34585 * 301.12589 * 13 12 11 38 38 H 0.97005 * 120.00365 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.49614 * 178.74639 * 22 13 12 40 40 H 1.08998 * 109.52116 * 58.66541 * 22 13 12 41 41 H 1.08998 * 109.59207 * 246.15572 * 23 10 8 42 42 H 1.09002 * 109.59022 * 6.44498 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6276 -0.0005 5 8 4.1316 0.7057 -0.0005 6 6 3.8458 3.0483 -0.0011 7 7 5.3108 3.0484 -0.0010 8 6 5.9846 4.2156 -0.0009 9 8 5.3803 5.2665 0.0921 10 7 7.3284 4.2179 -0.1041 11 6 8.0685 5.4821 -0.2163 12 6 8.9701 5.4211 -1.4533 13 6 9.8564 4.1757 -1.3722 14 6 10.7662 4.1285 -2.5727 15 1 10.7239 3.2881 -3.2497 16 6 11.6526 5.1583 -2.8068 17 7 11.7045 6.1815 -1.9823 18 14 12.7808 5.0994 -4.2944 19 1 12.1096 5.7458 -5.4507 20 1 14.0423 5.8206 -3.9879 21 1 13.0876 3.6851 -4.6274 22 6 8.9803 2.9211 -1.3468 23 6 8.0811 2.9561 -0.1070 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8935 -0.5138 0.8899 29 1 1.3881 2.1185 -0.0004 30 1 3.4827 3.5624 0.8889 31 1 3.4821 3.5619 -0.8911 32 1 5.7958 2.2083 -0.0010 33 1 7.3657 6.3093 -0.3168 34 1 8.6796 5.6282 0.6744 35 1 8.3536 5.3688 -2.3507 36 1 9.5951 6.3133 -1.4923 37 1 10.4565 4.2181 -0.4633 38 1 12.3283 6.9059 -2.1468 39 1 9.6144 2.0353 -1.3115 40 1 8.3620 2.8904 -2.2439 41 1 8.6953 2.8948 0.7915 42 1 7.3867 2.1163 -0.1328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611622911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:24 Heat of formation + Delta-G solvation = -93.453739 kcal Electronic energy + Delta-G solvation = -22466.451160 eV Core-core repulsion = 19059.305582 eV Total energy + Delta-G solvation = -3407.145579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59590 -40.63467 -38.53261 -36.48029 -35.59765 -35.26377 -32.92091 -32.03883 -31.51652 -28.80185 -27.58206 -24.76280 -24.01362 -23.53210 -21.92035 -21.63849 -20.56238 -19.41733 -18.37344 -17.70712 -17.50405 -17.14061 -16.76172 -16.51297 -16.33370 -15.49542 -15.26696 -15.19409 -14.91812 -14.58251 -14.44458 -14.17529 -13.96964 -13.47660 -13.40695 -13.31916 -12.98114 -12.80080 -12.68158 -12.46988 -12.36611 -12.15812 -11.93830 -11.44148 -11.37022 -11.14371 -10.94878 -10.79782 -10.40813 -10.33814 -10.14019 -9.42019 -8.06350 -6.20128 1.41908 1.43437 1.43956 1.48596 1.52717 2.09758 2.21110 2.44854 2.92268 3.20029 3.64378 4.06254 4.14681 4.22574 4.23378 4.30896 4.36190 4.38225 4.52580 4.53846 4.58963 4.72674 4.90121 4.93752 4.98044 5.07533 5.19394 5.22570 5.27958 5.33540 5.38612 5.46866 5.48555 5.66280 5.97888 6.02109 6.13325 6.39766 6.41653 6.90437 6.91703 7.09094 7.47656 7.48874 8.97146 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.032313 B = 0.003118 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.329396 B = 8976.660419 C = 9448.633253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.711 5.711 4 C 0.513 3.487 5 O -0.575 6.575 6 C 0.119 3.881 7 N -0.734 5.734 8 C 0.708 3.292 9 O -0.630 6.630 10 N -0.621 5.621 11 C 0.140 3.860 12 C -0.111 4.111 13 C 0.045 3.955 14 C -0.532 4.532 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.914 5.914 18 Si 0.951 3.049 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.115 4.115 23 C 0.117 3.883 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.420 0.580 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.409 0.591 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.531 -10.320 5.438 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.365 5.365 4 C 0.299 3.701 5 O -0.455 6.455 6 C -0.009 4.009 7 N -0.396 5.396 8 C 0.409 3.591 9 O -0.512 6.512 10 N -0.356 5.356 11 C 0.017 3.983 12 C -0.150 4.150 13 C 0.027 3.973 14 C -0.570 4.570 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.554 5.554 18 Si 0.777 3.223 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.153 4.153 23 C -0.006 4.006 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.257 0.743 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.345 -10.104 5.523 24.253 hybrid contribution 0.945 0.214 -0.884 1.312 sum -20.400 -9.890 4.639 23.140 Atomic orbital electron populations 1.21964 0.91756 1.04251 1.03444 1.21434 0.96299 0.81857 1.01739 1.45858 1.05966 1.10440 1.74193 1.20601 0.83387 0.90713 0.75423 1.90700 1.56383 1.47016 1.51366 1.21006 0.80212 0.93767 1.05905 1.44898 1.06616 1.07691 1.80374 1.15808 0.81704 0.83845 0.77750 1.90836 1.68277 1.31791 1.60343 1.47374 1.03901 1.08628 1.75736 1.21463 0.93696 0.84584 0.98594 1.21799 0.96243 1.02755 0.94223 1.18610 0.92224 0.91092 0.95406 1.21567 1.19677 1.05287 1.10505 0.93070 1.25699 0.98569 0.95320 0.98960 1.69971 1.37667 1.09675 1.38099 0.85671 0.78448 0.78207 0.79987 1.20539 1.20935 1.19353 1.21857 0.97529 0.99478 0.96440 1.21784 0.94919 0.84668 0.99185 0.91108 0.89794 0.90966 0.92394 0.92177 0.74263 0.87075 0.87572 0.75039 0.90952 0.92074 0.95916 0.90604 0.97724 0.93013 0.91041 0.93635 0.90597 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 10.03 71.98 0.72 -0.06 16 2 C 0.11 1.26 6.39 86.38 0.55 1.82 16 3 N -0.71 -8.75 5.56 -463.07 -2.57 -11.32 16 4 C 0.51 10.25 7.90 87.65 0.69 10.94 16 5 O -0.57 -16.05 15.67 -3.03 -0.05 -16.10 16 6 C 0.12 2.46 6.16 85.63 0.53 2.99 16 7 N -0.73 -20.72 5.44 -482.29 -2.62 -23.35 16 8 C 0.71 25.33 8.30 179.06 1.49 26.82 16 9 O -0.63 -25.91 15.79 -3.99 -0.06 -25.97 16 10 N -0.62 -22.97 2.97 -836.88 -2.49 -25.45 16 11 C 0.14 5.78 6.41 86.37 0.55 6.33 16 12 C -0.11 -5.36 5.16 30.69 0.16 -5.20 16 13 C 0.05 2.22 2.06 -11.50 -0.02 2.19 16 14 C -0.53 -29.05 8.56 25.60 0.22 -28.83 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.01 0.73 5.30 84.65 0.45 1.17 16 17 N -0.91 -52.28 11.30 21.44 0.24 -52.04 16 18 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 C -0.11 -4.53 5.30 30.67 0.16 -4.37 16 23 C 0.12 3.85 6.43 86.36 0.56 4.41 16 24 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.42 2.49 8.47 -92.71 -0.79 1.70 16 30 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 11.29 4.89 -92.71 -0.45 10.84 16 33 H 0.07 3.04 7.03 -2.39 -0.02 3.03 16 34 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 4.09 6.03 -2.39 -0.01 4.08 16 37 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.09 2.51 5.56 -2.39 -0.01 2.50 16 Total: -1.00 -70.71 339.48 0.32 -70.39 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.21 Total: 19.97 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.05 Total: 18.20 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -7.44 Total: -112.17 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.11 Total: -42.08 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.71 0.32 -70.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611622911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.059 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds