Wall clock time and date at job start Tue Mar 31 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 120.00157 * 2 1 4 4 C 1.50702 * 109.46957 * 269.99880 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72354 * 4 3 2 7 7 C 1.47021 * 125.64880 * 359.97385 * 6 4 3 8 8 C 1.54315 * 107.27662 * 180.96527 * 7 6 4 9 9 C 1.55159 * 102.86487 * 22.52300 * 8 7 6 10 10 C 1.47428 * 125.65051 * 180.27344 * 6 4 3 11 11 C 1.34774 * 119.99442 * 180.02562 * 2 1 3 12 12 O 1.21589 * 119.99951 * 180.02562 * 11 2 1 13 13 N 1.34778 * 120.00402 * 0.02562 * 11 2 1 14 14 C 1.46504 * 120.00259 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47257 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47223 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00223 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99659 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46735 * 120.00262 * 20 18 16 23 23 H 1.48503 * 109.46723 * 239.99842 * 20 18 16 24 24 H 1.08998 * 109.47311 * 89.99613 * 1 2 3 25 25 H 1.09001 * 109.47371 * 210.00280 * 1 2 3 26 26 H 1.09003 * 109.46700 * 329.99774 * 1 2 3 27 27 H 1.09004 * 109.47166 * 150.00146 * 3 2 1 28 28 H 1.08994 * 109.47507 * 29.99852 * 3 2 1 29 29 H 1.08998 * 109.88109 * 300.51046 * 7 6 4 30 30 H 1.09001 * 109.88624 * 61.67549 * 7 6 4 31 31 H 1.09000 * 110.92562 * 264.10677 * 8 7 6 32 32 H 1.09003 * 110.59336 * 140.78334 * 8 7 6 33 33 H 1.08994 * 111.00670 * 206.22889 * 9 8 7 34 34 H 1.09000 * 110.99915 * 82.37681 * 9 8 7 35 35 H 1.08994 * 110.37091 * 274.68026 * 10 6 4 36 36 H 1.09002 * 110.36001 * 36.89286 * 10 6 4 37 37 H 0.96994 * 119.99657 * 359.97438 * 13 11 2 38 38 H 1.08999 * 109.46584 * 299.99596 * 14 13 11 39 39 H 1.09005 * 109.47060 * 59.99261 * 14 13 11 40 40 H 1.08997 * 109.47038 * 300.00264 * 15 14 13 41 41 H 1.09000 * 109.46676 * 59.99690 * 15 14 13 42 42 H 0.96997 * 119.99657 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 8 2.0542 1.0213 -2.3427 6 7 3.1064 2.8539 -1.6671 7 6 3.6307 3.7761 -0.6492 8 6 4.2805 4.9605 -1.3949 9 6 3.5807 4.9230 -2.7792 10 6 3.4138 3.3991 -3.0020 11 6 2.1388 -1.1672 -0.0005 12 8 3.3547 -1.1674 -0.0001 13 7 1.4649 -2.3344 -0.0016 14 6 2.1973 -3.6033 -0.0016 15 6 1.2030 -4.7661 -0.0022 16 6 1.9564 -6.0712 -0.0028 17 1 3.0364 -6.0713 -0.0024 18 6 1.2670 -7.2653 -0.0040 19 7 -0.0482 -7.2651 -0.0041 20 14 2.2009 -8.8830 -0.0041 21 1 3.6609 -8.6117 -0.0021 22 1 1.8411 -9.6623 1.2077 23 1 1.8431 -9.6610 -1.2173 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 3.1500 1.1383 0.5138 28 1 1.6085 2.0283 0.5138 29 1 2.8167 4.1341 -0.0189 30 1 4.3787 3.2690 -0.0397 31 1 5.3549 4.8111 -1.5017 32 1 4.0698 5.8988 -0.8816 33 1 4.2140 5.3634 -3.5492 34 1 2.6117 5.4207 -2.7407 35 1 4.3391 2.9680 -3.3840 36 1 2.5919 3.2025 -3.6904 37 1 0.4949 -2.3344 -0.0016 38 1 2.8245 -3.6606 -0.8911 39 1 2.8234 -3.6614 0.8888 40 1 0.5760 -4.7085 0.8875 41 1 0.5767 -4.7081 -0.8924 42 1 -0.5332 -8.1051 -0.0053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612162943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:17 Heat of formation + Delta-G solvation = -86.600943 kcal Electronic energy + Delta-G solvation = -22235.795683 eV Core-core repulsion = 18828.947264 eV Total energy + Delta-G solvation = -3406.848419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60552 -40.60806 -38.40167 -36.77390 -36.37390 -34.83340 -32.91036 -31.63666 -30.23455 -29.16551 -27.54958 -26.28855 -24.42701 -22.96840 -22.08413 -21.39732 -20.27865 -19.16645 -18.51811 -18.43411 -17.57194 -17.30311 -16.82078 -16.50401 -16.23921 -15.63384 -15.32843 -14.95485 -14.89370 -14.45522 -14.29929 -14.21190 -14.04190 -13.74190 -13.50804 -13.27273 -13.15550 -12.96226 -12.79769 -12.51944 -12.27561 -12.18673 -12.14082 -11.69514 -11.58237 -11.49947 -11.27297 -11.21670 -10.61893 -10.20478 -9.70118 -9.58960 -8.24847 -6.35345 1.40283 1.40976 1.45675 1.53580 1.55752 1.97323 2.21690 2.40511 3.01854 3.09675 3.45478 3.69595 3.88382 4.00099 4.11357 4.22092 4.31084 4.32710 4.44829 4.48000 4.49164 4.60765 4.66900 4.82576 4.84905 4.85914 4.94943 5.00487 5.12673 5.24762 5.27457 5.34039 5.42666 5.49381 5.56550 5.74287 5.82706 6.15551 6.44053 6.77254 6.90299 7.09229 7.33761 7.48846 8.87568 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.002759 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.318402 B =10144.351493 C =10349.504596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.123 3.877 4 C 0.501 3.499 5 O -0.586 6.586 6 N -0.623 5.623 7 C 0.086 3.914 8 C -0.125 4.125 9 C -0.121 4.121 10 C 0.092 3.908 11 C 0.701 3.299 12 O -0.637 6.637 13 N -0.732 5.732 14 C 0.160 3.840 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.277 1.277 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.157 0.843 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.405 0.595 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.013 0.987 41 H 0.004 0.996 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 29.891 1.087 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C -0.004 4.004 4 C 0.289 3.711 5 O -0.466 6.466 6 N -0.358 5.358 7 C -0.036 4.036 8 C -0.162 4.162 9 C -0.159 4.159 10 C -0.030 4.030 11 C 0.402 3.598 12 O -0.519 6.519 13 N -0.388 5.388 14 C 0.036 3.964 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.202 1.202 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.175 0.825 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.242 0.758 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.031 0.969 41 H 0.023 0.977 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.349 29.327 0.645 29.524 hybrid contribution -0.161 -1.320 -0.457 1.406 sum 3.188 28.007 0.188 28.188 Atomic orbital electron populations 1.22005 0.77010 1.05264 1.02310 1.46637 1.07892 1.03364 1.77423 1.21360 1.00816 0.85925 0.92307 1.21614 0.76911 0.79512 0.93048 1.90700 1.53281 1.54549 1.48047 1.48713 1.55927 1.21615 1.09513 1.22452 0.99538 0.90525 0.91066 1.22673 1.00299 0.98130 0.95132 1.22760 1.02447 0.92054 0.98658 1.22366 1.00037 0.95699 0.84916 1.16096 0.84946 0.81391 0.77336 1.90823 1.13591 1.87081 1.60422 1.45355 1.10450 1.04490 1.78501 1.21099 0.94725 0.81141 0.99458 1.19119 0.94167 0.91627 0.96309 1.21471 0.93574 0.91826 1.51557 0.92347 1.25899 0.95852 1.03164 0.94345 1.70071 1.07542 1.27987 1.51009 0.85353 0.78888 0.78560 0.77974 1.19032 1.19908 1.20240 0.93373 0.90482 0.86715 0.87269 0.82515 0.88518 0.90749 0.90167 0.87198 0.88197 0.89778 0.92576 0.92460 0.75760 0.94605 0.93289 0.96915 0.97727 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 10.24 127.77 1.31 2.90 16 2 N -0.62 -17.99 2.36 -869.32 -2.05 -20.04 16 3 C 0.12 2.77 5.12 85.64 0.44 3.21 16 4 C 0.50 14.12 7.92 87.66 0.69 14.82 16 5 O -0.59 -23.07 16.68 -3.04 -0.05 -23.12 16 6 N -0.62 -12.64 3.33 -811.81 -2.70 -15.34 16 7 C 0.09 0.88 6.48 86.73 0.56 1.44 16 8 C -0.12 -0.76 6.95 31.78 0.22 -0.54 16 9 C -0.12 -1.05 7.08 31.99 0.23 -0.83 16 10 C 0.09 1.70 6.91 86.85 0.60 2.30 16 11 C 0.70 27.95 8.28 179.05 1.48 29.43 16 12 O -0.64 -30.23 15.92 -4.00 -0.06 -30.29 16 13 N -0.73 -29.49 5.42 -478.52 -2.59 -32.08 16 14 C 0.16 7.60 5.61 86.38 0.48 8.09 16 15 C 0.03 1.35 5.09 29.85 0.15 1.50 16 16 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.01 0.35 5.46 84.65 0.46 0.81 16 19 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 20 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.55 6.37 -2.39 -0.02 1.54 16 26 H 0.11 1.38 7.89 -2.39 -0.02 1.36 16 27 H 0.11 2.59 7.42 -2.38 -0.02 2.58 16 28 H 0.16 1.76 7.89 -2.39 -0.02 1.74 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 37 H 0.41 14.21 6.20 -92.71 -0.58 13.64 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -84.59 349.68 2.14 -82.45 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.43 Total: 15.27 kcal Atomic # 6 Polarization: 24.74 SS G_CDS: 6.87 Total: 31.61 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -7.06 Total: -122.80 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.11 Total: -53.41 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -84.59 2.14 -82.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612162943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.155 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds