Wall clock time and date at job start Tue Mar 31 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 119.99622 * 2 1 4 4 N 1.34774 * 120.00001 * 179.97438 * 2 1 3 5 5 C 1.46954 * 120.59411 * 180.02562 * 4 2 1 6 6 C 1.53378 * 108.63397 * 235.20346 * 5 4 2 7 7 N 1.46961 * 108.63281 * 310.57449 * 6 5 4 8 8 C 1.34774 * 120.59170 * 235.19829 * 7 6 5 9 9 O 1.21284 * 120.00306 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.99974 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.46724 * 40.00439 * 10 8 7 12 12 N 1.46898 * 109.47125 * 160.00093 * 10 8 7 13 13 C 1.52996 * 109.47139 * 280.00620 * 10 8 7 14 14 C 1.52997 * 109.46947 * 174.99712 * 13 10 8 15 15 C 1.50706 * 109.47238 * 179.97438 * 14 13 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47293 * 89.99746 * 19 17 15 21 21 H 1.48504 * 109.47104 * 209.99992 * 19 17 15 22 22 H 1.48495 * 109.47249 * 329.99739 * 19 17 15 23 23 C 1.46964 * 118.81118 * 55.47851 * 7 6 5 24 24 C 1.46969 * 120.59123 * 359.97438 * 4 2 1 25 25 H 1.08990 * 109.47632 * 240.00760 * 1 2 3 26 26 H 1.09002 * 109.47221 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46948 * 120.00451 * 1 2 3 28 28 H 1.09003 * 109.61595 * 115.45951 * 5 4 2 29 29 H 1.09001 * 109.61260 * 354.94611 * 5 4 2 30 30 H 1.09006 * 109.60938 * 190.82645 * 6 5 4 31 31 H 1.09000 * 109.60802 * 70.31823 * 6 5 4 32 32 H 1.00906 * 110.99610 * 60.00093 * 12 10 8 33 33 H 1.00896 * 110.99777 * 183.95669 * 12 10 8 34 34 H 1.09001 * 109.47372 * 55.00021 * 13 10 8 35 35 H 1.09004 * 109.47108 * 294.99766 * 13 10 8 36 36 H 1.09001 * 109.46832 * 59.99979 * 14 13 10 37 37 H 1.09000 * 109.47611 * 300.00276 * 14 13 10 38 38 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.60936 * 64.26525 * 23 7 6 40 40 H 1.09002 * 109.60759 * 184.77331 * 23 7 6 41 41 H 1.09000 * 109.60908 * 244.53757 * 24 4 2 42 42 H 1.08998 * 109.61338 * 5.04896 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6504 -1.1824 0.0011 6 6 4.1323 -2.0171 -1.1920 7 7 3.4107 -3.2974 -1.1914 8 6 4.0846 -4.4645 -1.1910 9 8 5.2974 -4.4646 -1.1906 10 6 3.3311 -5.7697 -1.1898 11 1 2.4674 -5.6911 -1.8501 12 7 4.2131 -6.8448 -1.6632 13 6 2.8597 -6.0852 0.2311 14 6 1.9898 -7.3436 0.2122 15 6 1.5259 -7.6548 1.6120 16 1 1.8217 -7.0183 2.4328 17 6 0.7241 -8.7519 1.8446 18 7 0.3643 -9.5272 0.8451 19 14 0.1486 -9.1371 3.5795 20 1 -1.1425 -8.4499 3.8369 21 1 -0.0333 -10.6036 3.7265 22 1 1.1640 -8.6641 4.5544 23 6 1.9411 -3.2821 -1.1976 24 6 1.4592 -2.4475 0.0017 25 1 -0.3634 -0.5136 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 4.0113 -1.6274 0.9284 29 1 4.0269 -0.1635 -0.0894 30 1 5.2030 -2.2005 -1.1015 31 1 3.9274 -1.4821 -2.1193 32 1 5.0220 -6.9376 -1.0671 33 1 3.7131 -7.7183 -1.7329 34 1 2.2781 -5.2472 0.6155 35 1 3.7252 -6.2513 0.8726 36 1 2.5714 -8.1816 -0.1721 37 1 1.1243 -7.1775 -0.4292 38 1 -0.2002 -10.2989 1.0087 39 1 1.5839 -2.8351 -2.1253 40 1 1.5644 -4.3013 -1.1109 41 1 1.6645 -2.9823 0.9290 42 1 0.3886 -2.2641 -0.0884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691612162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:56 Heat of formation + Delta-G solvation = -72.267207 kcal Electronic energy + Delta-G solvation = -23171.563257 eV Core-core repulsion = 19765.336395 eV Total energy + Delta-G solvation = -3406.226862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67629 -39.49825 -37.09402 -35.66031 -34.13126 -32.95189 -32.05314 -29.98747 -29.89278 -27.98029 -26.37355 -24.30781 -23.74872 -22.39061 -20.66080 -19.98223 -18.43639 -17.73161 -16.75434 -16.41331 -16.27387 -15.88239 -15.77949 -15.26853 -14.71739 -14.49923 -14.26194 -13.99744 -13.84289 -13.50246 -13.23683 -12.92670 -12.79853 -12.49395 -12.35145 -12.23560 -11.85324 -11.74865 -11.61153 -11.51025 -11.12059 -10.99203 -10.74376 -10.08442 -10.04177 -9.96766 -9.43009 -9.33325 -9.25422 -8.50818 -8.47311 -8.25594 -6.15298 -4.18848 2.38661 2.58421 2.80965 3.05747 3.21680 3.29559 3.32355 4.28692 4.33117 4.47077 4.57497 4.84454 4.90473 4.95415 5.00378 5.04619 5.09938 5.18175 5.21161 5.30927 5.37724 5.48010 5.54879 5.57082 5.62239 5.66447 5.76255 6.17272 6.19143 6.36767 6.44711 6.76960 7.10377 7.28208 7.42989 7.50198 7.55025 7.81221 7.83742 7.91661 8.23091 8.31260 8.87057 9.46715 10.95452 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.004610 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.795704 B = 6072.282063 C = 7366.961658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.514 3.486 3 O -0.551 6.551 4 N -0.613 5.613 5 C 0.097 3.903 6 C 0.100 3.900 7 N -0.617 5.617 8 C 0.529 3.471 9 O -0.535 6.535 10 C 0.074 3.926 11 H 0.097 0.903 12 N -0.831 5.831 13 C -0.139 4.139 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.089 3.911 24 C 0.090 3.910 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.346 0.654 33 H 0.355 0.645 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 14.377 -3.991 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.303 3.697 3 O -0.429 6.429 4 N -0.347 5.347 5 C -0.026 4.026 6 C -0.023 4.023 7 N -0.353 5.353 8 C 0.318 3.682 9 O -0.410 6.410 10 C -0.041 4.041 11 H 0.115 0.885 12 N -0.363 5.363 13 C -0.178 4.178 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.035 4.035 24 C -0.034 4.034 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.102 0.898 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.439 15.192 -4.707 15.911 hybrid contribution -0.771 -0.857 1.914 2.234 sum -0.332 14.336 -2.793 14.609 Atomic orbital electron populations 1.21957 0.91583 1.05474 1.04459 1.20871 0.90752 0.82868 0.75207 1.90704 1.70840 1.31032 1.50337 1.48129 1.06954 1.06171 1.73486 1.22013 0.79720 1.02110 0.98793 1.21912 0.98858 0.83683 0.97895 1.48022 1.06574 1.05711 1.74973 1.20968 0.87965 0.85151 0.74144 1.90631 1.14135 1.87077 1.49203 1.21516 0.95061 0.89197 0.98341 0.88517 1.58749 1.10924 1.09312 1.57319 1.22434 1.00733 1.01686 0.92968 1.19103 0.93945 0.90627 0.97547 1.21149 1.30872 1.10786 0.93463 0.92754 1.24995 0.96092 0.96095 0.96979 1.69948 1.36223 1.16122 1.30795 0.86603 0.79099 0.77591 0.84783 1.20591 1.21130 1.19907 1.22332 0.80191 1.02762 0.98201 1.22353 0.97390 0.83918 0.99747 0.89095 0.89025 0.89155 0.90865 0.87970 0.87838 0.91293 0.84084 0.82976 0.92503 0.92609 0.96373 0.96326 0.92831 0.90806 0.87159 0.89794 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 8.66 36.01 0.31 -0.91 16 2 C 0.51 5.69 7.81 -10.98 -0.09 5.61 16 3 O -0.55 -8.28 16.49 5.55 0.09 -8.19 16 4 N -0.61 -6.37 2.95 -172.19 -0.51 -6.88 16 5 C 0.10 1.06 6.59 -3.60 -0.02 1.04 16 6 C 0.10 1.15 6.59 -3.59 -0.02 1.12 16 7 N -0.62 -7.80 2.94 -172.18 -0.51 -8.31 16 8 C 0.53 8.41 6.95 -10.98 -0.08 8.33 16 9 O -0.54 -10.13 15.66 5.55 0.09 -10.05 16 10 C 0.07 1.18 2.35 -68.86 -0.16 1.01 16 11 H 0.10 1.43 6.75 -51.93 -0.35 1.08 16 12 N -0.83 -13.73 8.94 -5.65 -0.05 -13.78 16 13 C -0.14 -2.50 4.46 -26.73 -0.12 -2.62 16 14 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 15 C -0.52 -13.61 9.11 -34.44 -0.31 -13.92 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 19 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 C 0.09 0.89 5.94 -3.35 -0.02 0.87 16 24 C 0.09 0.80 6.52 -3.34 -0.02 0.78 16 25 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 26 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.09 0.46 7.72 -51.93 -0.40 0.06 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.15 6.99 -51.93 -0.36 0.79 16 30 H 0.10 1.29 6.99 -51.93 -0.36 0.93 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 33 H 0.35 5.84 7.55 -39.29 -0.30 5.54 16 34 H 0.06 0.95 6.90 -51.93 -0.36 0.59 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.11 1.16 4.87 -51.93 -0.25 0.90 16 41 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 42 H 0.10 0.63 5.91 -51.93 -0.31 0.32 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -32.67 336.24 -7.16 -39.82 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.29 Total: 7.86 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.76 Total: 3.26 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.33 Total: -53.21 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.67 -7.16 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691612162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.446 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds