Wall clock time and date at job start Tue Mar 31 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 O 1.21287 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00136 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00242 * 180.02562 * 6 4 3 8 8 C 1.53006 * 117.50134 * 223.74839 * 7 6 4 9 9 C 1.53003 * 117.49893 * 155.08984 * 7 6 4 10 10 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 11 11 O 1.21283 * 119.99750 * 180.02562 * 10 2 1 12 12 C 1.50702 * 119.99928 * 0.28128 * 10 2 1 13 13 H 1.08995 * 109.47357 * 39.71838 * 12 10 2 14 14 N 1.46895 * 109.46992 * 159.72213 * 12 10 2 15 15 C 1.52995 * 109.46732 * 279.72068 * 12 10 2 16 16 C 1.53009 * 109.47136 * 174.99999 * 15 12 10 17 17 C 1.50698 * 109.47293 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99700 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00235 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99716 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47113 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46975 * 120.00347 * 21 19 17 24 24 H 1.48498 * 109.47170 * 240.00275 * 21 19 17 25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 30 30 H 0.97003 * 120.00364 * 0.02562 * 6 4 3 31 31 H 1.08998 * 115.55230 * 9.41682 * 7 6 4 32 32 H 1.09002 * 117.49382 * 359.97438 * 8 7 6 33 33 H 1.08992 * 117.49869 * 145.02331 * 8 7 6 34 34 H 1.09006 * 117.49266 * 214.98118 * 9 7 6 35 35 H 1.08996 * 117.49864 * 359.97345 * 9 7 6 36 36 H 1.00901 * 111.00088 * 60.00223 * 14 12 10 37 37 H 1.00898 * 111.00134 * 183.95339 * 14 12 10 38 38 H 1.08995 * 109.47790 * 294.99945 * 15 12 10 39 39 H 1.09001 * 109.47648 * 55.00468 * 15 12 10 40 40 H 1.09003 * 109.46899 * 300.00304 * 16 15 12 41 41 H 1.09001 * 109.46469 * 59.99747 * 16 15 12 42 42 H 0.97000 * 120.00058 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3427 6 7 3.1115 2.8510 -1.6671 7 6 3.3553 3.2742 -3.0484 8 6 4.7480 3.8089 -3.3882 9 6 3.5587 4.7689 -3.3039 10 6 2.1390 -1.1672 0.0005 11 8 3.3518 -1.1671 0.0010 12 6 1.3855 -2.4723 -0.0053 13 1 0.5221 -2.3905 -0.6655 14 7 2.2679 -3.5449 -0.4837 15 6 0.9136 -2.7950 1.4138 16 6 0.0437 -4.0534 1.3883 17 6 -0.4206 -4.3717 2.7862 18 1 -0.1252 -3.7393 3.6104 19 6 -1.2234 -5.4694 3.0128 20 7 -1.5835 -6.2391 2.0090 21 14 -1.7984 -5.8643 4.7457 22 1 -1.2587 -4.8522 5.6890 23 1 -3.2825 -5.8417 4.7920 24 1 -1.3115 -7.2125 5.1336 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5137 29 1 3.1499 1.1385 0.5139 30 1 3.4273 3.3967 -0.9299 31 1 2.8364 2.6987 -3.8149 32 1 5.4828 3.8462 -2.5839 33 1 5.1451 3.5855 -4.3783 34 1 3.1739 5.1766 -4.2387 35 1 3.5108 5.4375 -2.4444 36 1 3.0764 -3.6408 0.1122 37 1 1.7680 -4.4182 -0.5581 38 1 1.7788 -2.9644 2.0548 39 1 0.3318 -1.9591 1.8022 40 1 -0.8215 -3.8841 0.7473 41 1 0.6255 -4.8894 0.9999 42 1 -2.1480 -7.0117 2.1685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691612298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:22 Heat of formation + Delta-G solvation = -47.744526 kcal Electronic energy + Delta-G solvation = -22303.394731 eV Core-core repulsion = 18898.231253 eV Total energy + Delta-G solvation = -3405.163479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40578 -39.28763 -37.31739 -35.49941 -35.23852 -33.12580 -32.83175 -29.86918 -29.20825 -26.76377 -25.80429 -23.76039 -22.77725 -22.27638 -20.99958 -20.37552 -18.89652 -17.59619 -17.41434 -16.87511 -16.27420 -15.93746 -15.23972 -14.94315 -14.80177 -14.47893 -14.24992 -13.99168 -13.70845 -13.35811 -13.00635 -12.93349 -12.55647 -12.44686 -12.20698 -12.07477 -11.97123 -11.59695 -11.53637 -11.05136 -10.90258 -10.89676 -10.65829 -10.21238 -9.95272 -9.88542 -9.25448 -9.17075 -9.04244 -8.63980 -8.43131 -8.11576 -6.07470 -4.10530 2.41491 2.54600 3.01762 3.20280 3.26499 3.34551 3.38130 3.55769 4.39801 4.40265 4.54497 4.56893 4.62099 4.69915 5.03786 5.14598 5.21741 5.22344 5.27572 5.28853 5.43331 5.52883 5.58032 5.67416 5.67821 5.79883 5.92902 6.20643 6.32781 6.39171 6.55908 6.89702 7.21163 7.34621 7.53543 7.61884 7.67392 7.89871 7.97159 8.03643 8.32392 8.42746 8.95736 9.54308 11.03476 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.040970 B = 0.002905 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.262755 B = 9634.686493 C = 9859.974557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.604 5.604 3 C 0.100 3.900 4 C 0.500 3.500 5 O -0.520 6.520 6 N -0.707 5.707 7 C 0.082 3.918 8 C -0.194 4.194 9 C -0.190 4.190 10 C 0.534 3.466 11 O -0.537 6.537 12 C 0.077 3.923 13 H 0.100 0.900 14 N -0.830 5.830 15 C -0.138 4.138 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.401 0.599 31 H 0.137 0.863 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.344 0.656 37 H 0.354 0.646 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.287 21.641 -6.556 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.338 5.338 3 C -0.028 4.028 4 C 0.285 3.715 5 O -0.394 6.394 6 N -0.359 5.359 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.229 4.229 10 C 0.324 3.676 11 O -0.412 6.412 12 C -0.038 4.038 13 H 0.117 0.883 14 N -0.362 5.362 15 C -0.177 4.177 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.235 0.765 31 H 0.154 0.846 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.589 21.351 -7.919 24.004 hybrid contribution -0.469 -0.282 2.161 2.229 sum 7.120 21.070 -5.758 22.973 Atomic orbital electron populations 1.21920 0.78417 1.03717 1.02242 1.47411 1.07277 1.04373 1.74709 1.21190 1.00575 0.87782 0.93244 1.21451 0.77172 0.80099 0.92758 1.90729 1.49822 1.52745 1.46111 1.45392 1.58892 1.24483 1.07106 1.21578 0.99457 0.95524 0.85864 1.23437 0.92147 1.04029 1.03704 1.23388 1.02871 0.92811 1.03807 1.20929 0.87871 0.85209 0.73641 1.90612 1.14236 1.87222 1.49168 1.21506 0.95070 0.88922 0.98329 0.88274 1.58725 1.10918 1.09431 1.57169 1.22391 1.00620 1.01706 0.93008 1.19108 0.94043 0.90661 0.97491 1.21209 1.30608 1.10690 0.93507 0.92682 1.25018 0.96162 0.96214 0.96977 1.69960 1.36382 1.16267 1.30559 0.86537 0.78451 0.78278 0.84741 1.19783 1.20963 1.20970 0.91734 0.91475 0.89996 0.87484 0.86895 0.76496 0.84568 0.88441 0.87998 0.87927 0.88486 0.84255 0.83041 0.92740 0.92374 0.96292 0.96409 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.57 59.85 0.57 1.53 16 2 N -0.60 -8.63 2.36 -182.95 -0.43 -9.06 16 3 C 0.10 1.10 5.89 -5.20 -0.03 1.07 16 4 C 0.50 6.30 7.90 -10.99 -0.09 6.21 16 5 O -0.52 -8.98 16.00 5.55 0.09 -8.90 16 6 N -0.71 -6.32 5.57 -53.80 -0.30 -6.62 16 7 C 0.08 0.73 6.43 -67.92 -0.44 0.29 16 8 C -0.19 -1.36 10.46 -26.69 -0.28 -1.64 16 9 C -0.19 -1.15 10.46 -26.69 -0.28 -1.43 16 10 C 0.53 9.60 6.92 -10.98 -0.08 9.52 16 11 O -0.54 -11.02 15.83 5.55 0.09 -10.94 16 12 C 0.08 1.40 2.47 -68.87 -0.17 1.23 16 13 H 0.10 1.76 6.30 -51.93 -0.33 1.44 16 14 N -0.83 -15.41 8.94 -5.66 -0.05 -15.46 16 15 C -0.14 -2.73 4.71 -26.73 -0.13 -2.86 16 16 C 0.02 0.59 4.74 -27.88 -0.13 0.45 16 17 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 26 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 27 H 0.08 1.06 5.94 -51.93 -0.31 0.76 16 28 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.11 1.25 7.42 -51.93 -0.39 0.86 16 30 H 0.40 2.26 8.83 -40.82 -0.36 1.90 16 31 H 0.14 1.47 7.40 -51.93 -0.38 1.09 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.34 6.37 8.58 -39.29 -0.34 6.03 16 37 H 0.35 6.49 7.55 -39.29 -0.30 6.19 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.09 6.96 -51.93 -0.36 0.73 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -35.29 351.52 -7.48 -42.77 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.43 Total: 10.74 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.46 Total: 1.31 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.05 Total: -56.48 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.18 Total: -19.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.29 -7.48 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691612298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.977 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds