Wall clock time and date at job start Tue Mar 31 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 O 1.21287 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00136 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00242 * 180.02562 * 6 4 3 8 8 C 1.53006 * 117.50134 * 223.74839 * 7 6 4 9 9 C 1.53003 * 117.49893 * 155.08984 * 7 6 4 10 10 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 11 11 O 1.21283 * 119.99750 * 180.02562 * 10 2 1 12 12 C 1.50702 * 119.99928 * 0.28128 * 10 2 1 13 13 H 1.08995 * 109.47357 * 39.71838 * 12 10 2 14 14 N 1.46895 * 109.46992 * 159.72213 * 12 10 2 15 15 C 1.52995 * 109.46732 * 279.72068 * 12 10 2 16 16 C 1.53009 * 109.47136 * 174.99999 * 15 12 10 17 17 C 1.50698 * 109.47293 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99700 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00235 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99716 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47113 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46975 * 120.00347 * 21 19 17 24 24 H 1.48498 * 109.47170 * 240.00275 * 21 19 17 25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 30 30 H 0.97003 * 120.00364 * 0.02562 * 6 4 3 31 31 H 1.08998 * 115.55230 * 9.41682 * 7 6 4 32 32 H 1.09002 * 117.49382 * 359.97438 * 8 7 6 33 33 H 1.08992 * 117.49869 * 145.02331 * 8 7 6 34 34 H 1.09006 * 117.49266 * 214.98118 * 9 7 6 35 35 H 1.08996 * 117.49864 * 359.97345 * 9 7 6 36 36 H 1.00901 * 111.00088 * 60.00223 * 14 12 10 37 37 H 1.00898 * 111.00134 * 183.95339 * 14 12 10 38 38 H 1.08995 * 109.47790 * 294.99945 * 15 12 10 39 39 H 1.09001 * 109.47648 * 55.00468 * 15 12 10 40 40 H 1.09003 * 109.46899 * 300.00304 * 16 15 12 41 41 H 1.09001 * 109.46469 * 59.99747 * 16 15 12 42 42 H 0.97000 * 120.00058 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3427 6 7 3.1115 2.8510 -1.6671 7 6 3.3553 3.2742 -3.0484 8 6 4.7480 3.8089 -3.3882 9 6 3.5587 4.7689 -3.3039 10 6 2.1390 -1.1672 0.0005 11 8 3.3518 -1.1671 0.0010 12 6 1.3855 -2.4723 -0.0053 13 1 0.5221 -2.3905 -0.6655 14 7 2.2679 -3.5449 -0.4837 15 6 0.9136 -2.7950 1.4138 16 6 0.0437 -4.0534 1.3883 17 6 -0.4206 -4.3717 2.7862 18 1 -0.1252 -3.7393 3.6104 19 6 -1.2234 -5.4694 3.0128 20 7 -1.5835 -6.2391 2.0090 21 14 -1.7984 -5.8643 4.7457 22 1 -1.2587 -4.8522 5.6890 23 1 -3.2825 -5.8417 4.7920 24 1 -1.3115 -7.2125 5.1336 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5137 29 1 3.1499 1.1385 0.5139 30 1 3.4273 3.3967 -0.9299 31 1 2.8364 2.6987 -3.8149 32 1 5.4828 3.8462 -2.5839 33 1 5.1451 3.5855 -4.3783 34 1 3.1739 5.1766 -4.2387 35 1 3.5108 5.4375 -2.4444 36 1 3.0764 -3.6408 0.1122 37 1 1.7680 -4.4182 -0.5581 38 1 1.7788 -2.9644 2.0548 39 1 0.3318 -1.9591 1.8022 40 1 -0.8215 -3.8841 0.7473 41 1 0.6255 -4.8894 0.9999 42 1 -2.1480 -7.0117 2.1685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691612298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:22 Heat of formation + Delta-G solvation = -74.756358 kcal Electronic energy + Delta-G solvation = -22304.566052 eV Core-core repulsion = 18898.231253 eV Total energy + Delta-G solvation = -3406.334800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53416 -40.39357 -38.09859 -37.10959 -36.44110 -34.84495 -33.95149 -31.69603 -30.23658 -28.15829 -27.23738 -25.38003 -23.30036 -23.21703 -22.21852 -21.70616 -20.19504 -18.87953 -18.49859 -18.23387 -17.72574 -17.04872 -16.51035 -16.26794 -16.06203 -15.64372 -15.61465 -15.27582 -15.03995 -14.62805 -14.49672 -13.99313 -13.76063 -13.68047 -13.55819 -13.33577 -13.00024 -12.88960 -12.59774 -12.49483 -12.47424 -12.34295 -11.78637 -11.70601 -11.50245 -11.27196 -11.23955 -10.74602 -10.55455 -9.80165 -9.76588 -9.62084 -8.19906 -6.30398 1.40117 1.41142 1.42557 1.51638 1.53615 1.81316 2.25946 2.41213 2.97131 3.13869 3.50060 3.70675 3.72605 3.82235 4.02819 4.04325 4.05745 4.18831 4.21037 4.29582 4.35042 4.63006 4.75050 4.75342 4.80067 4.80638 4.95952 5.01032 5.10692 5.19519 5.35453 5.48339 5.49881 5.66134 5.81760 6.00834 6.21648 6.26890 6.46354 6.47075 6.85397 7.08065 7.21073 7.38815 8.91279 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.040970 B = 0.002905 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.262755 B = 9634.686493 C = 9859.974557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.096 3.904 4 C 0.496 3.504 5 O -0.578 6.578 6 N -0.688 5.688 7 C 0.048 3.952 8 C -0.191 4.191 9 C -0.163 4.163 10 C 0.530 3.470 11 O -0.570 6.570 12 C 0.080 3.920 13 H 0.102 0.898 14 N -0.834 5.834 15 C -0.117 4.117 16 C 0.030 3.970 17 C -0.540 4.540 18 H 0.058 0.942 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.961 3.039 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.282 1.282 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.115 0.885 30 H 0.419 0.581 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.344 0.656 37 H 0.353 0.647 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.001 0.999 41 H -0.001 1.001 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 24.190 -5.174 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C -0.030 4.030 4 C 0.282 3.718 5 O -0.456 6.456 6 N -0.340 5.340 7 C -0.058 4.058 8 C -0.230 4.230 9 C -0.201 4.201 10 C 0.319 3.681 11 O -0.448 6.448 12 C -0.035 4.035 13 H 0.120 0.880 14 N -0.365 5.365 15 C -0.157 4.157 16 C -0.007 4.007 17 C -0.578 4.578 18 H 0.076 0.924 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.786 3.214 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.207 1.207 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.175 0.825 29 H 0.133 0.867 30 H 0.257 0.743 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.590 23.989 -6.519 25.992 hybrid contribution -0.453 -0.993 1.662 1.988 sum 7.137 22.996 -4.857 24.563 Atomic orbital electron populations 1.22098 0.77036 1.04273 1.03383 1.47443 1.08288 1.04529 1.72839 1.21537 1.01390 0.87307 0.92767 1.21721 0.76894 0.80417 0.92737 1.90711 1.52566 1.54676 1.47671 1.45212 1.57326 1.23477 1.07967 1.21596 1.01309 0.97738 0.85192 1.23508 0.91681 1.03728 1.04065 1.23469 1.00749 0.90940 1.04895 1.20753 0.87444 0.86047 0.73903 1.90588 1.15353 1.87802 1.51105 1.21438 0.95274 0.89573 0.97195 0.87999 1.58736 1.11018 1.09553 1.57214 1.22107 0.99491 0.99964 0.94122 1.18969 0.93755 0.92119 0.95866 1.21628 1.30577 1.10845 0.94742 0.92409 1.25898 0.96360 0.96143 1.01127 1.70080 1.37169 1.16839 1.32800 0.85461 0.78064 0.78096 0.79792 1.18725 1.20316 1.20746 0.90126 0.89072 0.91458 0.82544 0.86667 0.74332 0.87333 0.87640 0.87850 0.86994 0.86549 0.84273 0.83238 0.93532 0.90944 0.98076 0.98243 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 9.57 127.77 1.22 2.87 16 2 N -0.60 -16.31 2.36 -851.12 -2.01 -18.32 16 3 C 0.10 1.91 5.89 85.63 0.50 2.41 16 4 C 0.50 12.00 7.90 87.66 0.69 12.69 16 5 O -0.58 -20.25 16.00 -3.05 -0.05 -20.30 16 6 N -0.69 -11.17 5.57 -442.51 -2.46 -13.63 16 7 C 0.05 0.81 6.43 44.99 0.29 1.09 16 8 C -0.19 -2.35 10.46 30.62 0.32 -2.03 16 9 C -0.16 -1.54 10.46 30.62 0.32 -1.22 16 10 C 0.53 18.91 6.92 87.66 0.61 19.51 16 11 O -0.57 -23.47 15.83 -3.04 -0.05 -23.52 16 12 C 0.08 2.95 2.47 44.17 0.11 3.06 16 13 H 0.10 3.69 6.30 -2.39 -0.02 3.67 16 14 N -0.83 -31.75 8.94 -171.82 -1.54 -33.29 16 15 C -0.12 -4.65 4.71 30.60 0.14 -4.50 16 16 C 0.03 1.49 4.74 29.85 0.14 1.64 16 17 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 18 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 19 C 0.00 0.16 5.46 84.65 0.46 0.63 16 20 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 21 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H 0.08 1.56 7.66 -2.39 -0.02 1.54 16 26 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 27 H 0.07 1.71 5.94 -2.39 -0.01 1.70 16 28 H 0.16 1.51 8.07 -2.39 -0.02 1.50 16 29 H 0.12 2.31 7.42 -2.38 -0.02 2.29 16 30 H 0.42 3.55 8.83 -92.71 -0.82 2.73 16 31 H 0.11 2.46 7.40 -2.39 -0.02 2.44 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.34 13.06 8.58 -89.69 -0.77 12.29 16 37 H 0.35 13.41 7.55 -89.70 -0.68 12.74 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.64 6.96 -2.39 -0.02 2.62 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.00 -0.04 6.87 -2.39 -0.02 -0.05 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -77.67 351.52 0.04 -77.63 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -1.21 Total: 33.91 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.05 Total: 6.85 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -5.72 Total: -119.83 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.10 Total: -43.82 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.67 0.04 -77.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691612298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.871 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds