Wall clock time and date at job start Tue Mar 31 2020 03:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00015 * 2 1 4 4 C 1.50706 * 109.46972 * 269.99750 * 3 2 1 5 5 O 1.21282 * 120.00036 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99746 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99920 * 180.02562 * 6 4 3 8 8 C 1.53004 * 117.49962 * 223.75257 * 7 6 4 9 9 C 1.52998 * 117.49870 * 155.09241 * 7 6 4 10 10 C 1.34781 * 119.99740 * 180.02562 * 2 1 3 11 11 O 1.21275 * 119.99676 * 180.02562 * 10 2 1 12 12 C 1.50703 * 119.99971 * 359.97438 * 10 2 1 13 13 H 1.09002 * 109.47083 * 320.00492 * 12 10 2 14 14 N 1.46898 * 109.47113 * 200.00293 * 12 10 2 15 15 C 1.53000 * 109.46801 * 80.00207 * 12 10 2 16 16 C 1.52997 * 109.47060 * 184.99876 * 15 12 10 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 H 1.09001 * 109.46692 * 270.00187 * 1 2 3 26 26 H 1.09007 * 109.46709 * 29.99949 * 1 2 3 27 27 H 1.08998 * 109.47293 * 150.00019 * 1 2 3 28 28 H 1.08994 * 109.47518 * 29.99992 * 3 2 1 29 29 H 1.09001 * 109.46944 * 150.00405 * 3 2 1 30 30 H 0.96996 * 120.00013 * 0.02562 * 6 4 3 31 31 H 1.09001 * 115.54980 * 9.42183 * 7 6 4 32 32 H 1.08999 * 117.49844 * 0.02562 * 8 7 6 33 33 H 1.09002 * 117.49615 * 145.01906 * 8 7 6 34 34 H 1.09000 * 117.49926 * 214.98197 * 9 7 6 35 35 H 1.08998 * 117.49807 * 359.97438 * 9 7 6 36 36 H 1.00899 * 111.00057 * 300.00501 * 14 12 10 37 37 H 1.00902 * 110.99515 * 63.95638 * 14 12 10 38 38 H 1.09002 * 109.47398 * 305.00045 * 15 12 10 39 39 H 1.09001 * 109.47194 * 65.00225 * 15 12 10 40 40 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 41 41 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 42 42 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 8 2.0543 1.0213 -2.3427 6 7 3.1109 2.8515 -1.6671 7 6 3.3546 3.2747 -3.0484 8 6 4.7470 3.8103 -3.3879 9 6 3.5570 4.7695 -3.3039 10 6 2.1389 -1.1673 -0.0005 11 8 3.3516 -1.1673 -0.0001 12 6 1.3853 -2.4724 -0.0005 13 1 0.5221 -2.3935 0.6603 14 7 2.2677 -3.5473 0.4727 15 6 0.9129 -2.7884 -1.4210 16 6 0.0430 -4.0468 -1.4010 17 6 -0.4219 -4.3586 -2.8002 18 1 -0.1260 -3.7229 -3.6217 19 6 -1.2240 -5.4558 -3.0319 20 7 -1.5838 -6.2301 -2.0315 21 14 -1.8008 -5.8418 -4.7661 22 1 -1.2621 -4.8248 -5.7047 23 1 -1.3132 -7.1875 -5.1620 24 1 -3.2848 -5.8202 -4.8105 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1383 0.5138 30 1 3.4260 3.3974 -0.9299 31 1 2.8362 2.6987 -3.8149 32 1 5.4818 3.8474 -2.5837 33 1 5.1445 3.5869 -4.3780 34 1 3.1722 5.1769 -4.2388 35 1 3.5085 5.4381 -2.4445 36 1 3.0761 -3.6404 -0.1239 37 1 2.5416 -3.3943 1.4317 38 1 0.3311 -1.9506 -1.8054 39 1 1.7779 -2.9549 -2.0630 40 1 0.6248 -4.8847 -1.0167 41 1 -0.8220 -3.8805 -0.7591 42 1 -2.1478 -7.0023 -2.1945 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691612306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:25 Heat of formation + Delta-G solvation = -46.225744 kcal Electronic energy + Delta-G solvation = -22543.070836 eV Core-core repulsion = 19137.973216 eV Total energy + Delta-G solvation = -3405.097619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.46955 -39.36075 -37.31188 -35.36476 -35.22700 -33.11332 -32.74024 -30.07680 -29.15285 -26.73513 -25.80681 -23.53623 -22.75857 -22.20639 -20.95085 -20.22697 -19.02254 -17.59297 -17.23818 -16.87888 -16.30418 -15.85911 -15.43511 -15.06542 -14.91598 -14.66496 -14.36467 -14.00907 -13.52294 -13.30174 -13.02005 -12.92474 -12.55021 -12.26796 -12.01365 -11.95198 -11.91077 -11.57248 -11.46199 -10.87487 -10.84865 -10.60147 -10.44887 -10.21366 -10.05504 -9.69577 -9.29723 -9.02679 -8.92272 -8.70304 -8.31149 -8.15473 -5.88259 -3.89511 2.41965 2.49714 2.91465 3.16994 3.38454 3.45759 3.51285 3.57679 4.42316 4.53638 4.55014 4.58186 4.64065 4.67291 4.93774 5.05187 5.17249 5.22773 5.24140 5.45782 5.47332 5.49797 5.59300 5.61674 5.69793 5.84214 5.91597 6.21492 6.32501 6.57667 6.78672 7.16305 7.21537 7.30681 7.53195 7.82519 7.84681 8.02544 8.04924 8.19202 8.27018 8.55987 9.18778 9.73430 11.22744 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.003811 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.661934 B = 7345.582074 C = 8360.004052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.097 3.903 4 C 0.497 3.503 5 O -0.514 6.514 6 N -0.707 5.707 7 C 0.082 3.918 8 C -0.195 4.195 9 C -0.190 4.190 10 C 0.492 3.508 11 O -0.553 6.553 12 C 0.081 3.919 13 H 0.099 0.901 14 N -0.807 5.807 15 C -0.096 4.096 16 C 0.032 3.968 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.400 0.600 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.348 0.652 37 H 0.333 0.667 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.013 0.987 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 22.812 5.974 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C -0.031 4.031 4 C 0.282 3.718 5 O -0.387 6.387 6 N -0.359 5.359 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.228 4.228 10 C 0.280 3.720 11 O -0.430 6.430 12 C -0.035 4.035 13 H 0.117 0.883 14 N -0.334 5.334 15 C -0.134 4.134 16 C -0.005 4.005 17 C -0.557 4.557 18 H 0.071 0.929 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.234 0.766 31 H 0.155 0.845 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.889 21.582 5.219 23.563 hybrid contribution 0.551 1.076 -0.546 1.326 sum 8.439 22.657 4.673 24.625 Atomic orbital electron populations 1.22029 0.78269 1.04903 1.01823 1.47604 1.07425 1.04428 1.73871 1.21223 1.00404 0.88035 0.93446 1.21425 0.77422 0.80266 0.92737 1.90776 1.49351 1.52584 1.45959 1.45385 1.59019 1.24428 1.07099 1.21591 0.99450 0.95545 0.85836 1.23434 0.92119 1.04066 1.03707 1.23382 1.02841 0.92804 1.03808 1.22837 0.88741 0.86906 0.73541 1.90620 1.14463 1.87551 1.50363 1.21859 0.95658 0.84260 1.01732 0.88318 1.59019 1.24040 1.43702 1.06671 1.21696 1.00340 1.01451 0.89894 1.19021 0.93654 0.91418 0.96424 1.21341 1.30043 1.10333 0.94011 0.92886 1.24986 0.96425 0.96305 0.96650 1.69991 1.36742 1.16172 1.30434 0.86601 0.78323 0.78189 0.85286 1.19825 1.21097 1.21124 0.92278 0.91242 0.88865 0.87614 0.87129 0.76622 0.84482 0.88507 0.87967 0.87885 0.88533 0.83836 0.85561 0.92318 0.92873 0.94716 0.96898 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 9.85 59.85 0.59 1.44 16 2 N -0.60 -8.26 2.36 -182.95 -0.43 -8.70 16 3 C 0.10 1.03 5.89 -5.19 -0.03 1.00 16 4 C 0.50 6.44 7.90 -10.98 -0.09 6.35 16 5 O -0.51 -9.33 16.00 5.56 0.09 -9.24 16 6 N -0.71 -6.58 5.57 -53.80 -0.30 -6.88 16 7 C 0.08 0.78 6.43 -67.93 -0.44 0.34 16 8 C -0.19 -1.46 10.46 -26.69 -0.28 -1.74 16 9 C -0.19 -1.25 10.46 -26.69 -0.28 -1.52 16 10 C 0.49 8.37 6.91 -10.98 -0.08 8.30 16 11 O -0.55 -10.66 15.83 5.56 0.09 -10.57 16 12 C 0.08 1.44 2.31 -68.86 -0.16 1.28 16 13 H 0.10 1.63 7.21 -51.93 -0.37 1.26 16 14 N -0.81 -14.25 8.44 -5.65 -0.05 -14.30 16 15 C -0.10 -2.08 4.45 -26.73 -0.12 -2.20 16 16 C 0.03 0.84 4.86 -27.89 -0.14 0.71 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 21 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 27 H 0.09 1.31 4.83 -51.93 -0.25 1.06 16 28 H 0.11 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.11 1.16 7.42 -51.93 -0.39 0.77 16 30 H 0.40 2.31 8.83 -40.82 -0.36 1.95 16 31 H 0.14 1.62 7.40 -51.93 -0.38 1.23 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.35 6.31 8.58 -39.29 -0.34 5.97 16 37 H 0.33 5.01 9.06 -39.29 -0.36 4.66 16 38 H 0.06 1.26 6.43 -51.93 -0.33 0.92 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.03 0.99 7.75 -51.93 -0.40 0.58 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -36.96 353.13 -7.51 -44.47 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.52 Total: 9.18 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.42 Total: 0.06 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.04 Total: -56.53 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.96 -7.51 -44.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691612306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.757 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds