Wall clock time and date at job start Tue Mar 31 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45749 * 117.95362 * 2 1 4 4 C 1.52914 * 110.49215 * 160.92042 * 3 2 1 5 5 C 1.53364 * 108.66194 * 50.76455 * 4 3 2 6 6 C 1.53068 * 108.41279 * 292.44561 * 5 4 3 7 7 H 1.08998 * 109.33039 * 288.82471 * 6 5 4 8 8 N 1.46501 * 109.40088 * 169.03610 * 6 5 4 9 9 C 1.34777 * 119.99862 * 154.56979 * 8 6 5 10 10 O 1.21282 * 120.00142 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99986 * 180.02562 * 9 8 6 12 12 H 1.09001 * 109.47087 * 40.00373 * 11 9 8 13 13 N 1.46905 * 109.47121 * 160.00176 * 11 9 8 14 14 C 1.52998 * 109.47064 * 280.00094 * 11 9 8 15 15 C 1.53004 * 109.47139 * 174.99796 * 14 11 9 16 16 C 1.50698 * 109.47137 * 179.97438 * 15 14 11 17 17 H 1.08002 * 120.00164 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00019 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00123 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00122 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47173 * 90.00290 * 20 18 16 22 22 H 1.48506 * 109.47063 * 209.99803 * 20 18 16 23 23 H 1.48498 * 109.47038 * 329.99995 * 20 18 16 24 24 C 1.33358 * 117.94487 * 179.97438 * 2 1 3 25 25 O 1.21286 * 118.24380 * 2.22755 * 24 2 1 26 26 H 1.08996 * 109.47553 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46860 * 300.02691 * 1 2 3 28 28 H 1.09004 * 109.46548 * 60.02339 * 1 2 3 29 29 H 1.09001 * 109.30082 * 281.23857 * 3 2 1 30 30 H 1.09005 * 109.29900 * 40.81203 * 3 2 1 31 31 H 1.08998 * 109.60457 * 170.50838 * 4 3 2 32 32 H 1.08998 * 109.60350 * 290.83247 * 4 3 2 33 33 H 1.08999 * 109.67504 * 172.71573 * 5 4 3 34 34 H 1.09004 * 109.68702 * 52.17943 * 5 4 3 35 35 H 0.96998 * 120.00427 * 334.57504 * 8 6 5 36 36 H 1.00901 * 110.99869 * 60.00289 * 13 11 9 37 37 H 1.00896 * 110.99543 * 183.95412 * 13 11 9 38 38 H 1.08995 * 109.47368 * 294.99520 * 14 11 9 39 39 H 1.09001 * 109.47446 * 54.99927 * 14 11 9 40 40 H 1.08994 * 109.47287 * 300.00153 * 15 14 11 41 41 H 1.09004 * 109.46568 * 60.00209 * 15 14 11 42 42 H 0.96998 * 120.00540 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2874 0.0000 4 6 3.5949 1.1258 0.4682 5 6 4.2492 -0.0016 -0.3400 6 6 3.5838 -1.3241 0.0487 7 1 3.8884 -1.5981 1.0588 8 7 4.0007 -2.3719 -0.8865 9 6 3.9907 -3.6630 -0.5000 10 8 3.6369 -3.9574 0.6221 11 6 4.4201 -4.7408 -1.4617 12 1 5.2828 -4.3963 -2.0320 13 7 4.7808 -5.9513 -0.7115 14 6 3.2695 -5.0581 -2.4190 15 6 3.7444 -6.0608 -3.4726 16 6 2.6110 -6.3738 -4.4151 17 1 1.6483 -5.9042 -4.2768 18 6 2.8029 -7.2597 -5.4540 19 7 3.9751 -7.8320 -5.6222 20 14 1.3982 -7.6471 -6.6228 21 1 1.4232 -6.6929 -7.7604 22 1 1.5487 -9.0326 -7.1356 23 1 0.1059 -7.5238 -5.9016 24 6 2.0900 -1.1781 0.0005 25 8 1.4158 -2.1855 -0.0406 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3632 0.5135 -0.8903 29 1 2.1400 1.6997 -1.0090 30 1 1.6293 1.9707 0.6724 31 1 4.1385 2.0562 0.3043 32 1 3.6102 0.8753 1.5289 33 1 5.3142 -0.0458 -0.1124 34 1 4.1084 0.1809 -1.4053 35 1 4.2841 -2.1365 -1.7837 36 1 3.9971 -6.2907 -0.1742 37 1 5.1334 -6.6674 -1.3286 38 1 2.4383 -5.4861 -1.8588 39 1 2.9428 -4.1418 -2.9107 40 1 4.5757 -5.6329 -4.0329 41 1 4.0711 -6.9771 -2.9808 42 1 4.1101 -8.4555 -6.3529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704361949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:46 Heat of formation + Delta-G solvation = -79.976023 kcal Electronic energy + Delta-G solvation = -22915.477829 eV Core-core repulsion = 19508.916687 eV Total energy + Delta-G solvation = -3406.561141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90165 -39.14519 -36.67280 -35.68948 -35.01381 -32.81169 -32.63115 -29.82032 -29.23242 -27.32323 -26.43475 -24.51521 -23.19032 -22.63737 -20.66666 -19.74677 -18.98068 -17.32531 -17.07299 -16.74028 -16.43282 -16.11931 -15.29840 -14.69673 -14.52629 -14.42831 -14.21422 -13.98947 -13.81766 -13.61715 -13.06850 -12.88233 -12.82770 -12.37213 -12.18790 -12.09094 -11.79662 -11.64439 -11.60160 -11.28030 -11.01440 -10.87320 -10.63631 -10.09336 -9.90292 -9.83079 -9.21411 -9.13754 -8.89492 -8.87912 -8.39131 -8.11762 -6.03920 -4.06349 2.46252 2.73404 3.14531 3.30363 3.35225 3.36887 3.41692 4.28141 4.31577 4.35258 4.43877 4.47262 4.92859 4.96394 5.08318 5.17023 5.20431 5.27889 5.31935 5.32524 5.37495 5.45850 5.54834 5.65587 5.75157 5.76380 5.86687 6.19342 6.38880 6.44682 6.65062 6.96872 7.26342 7.48122 7.57866 7.67167 7.74751 7.93941 7.98070 8.11993 8.37583 8.57373 8.99749 9.58203 11.07078 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.003900 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.455163 B = 7177.936569 C = 7923.152627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.113 3.887 4 C -0.133 4.133 5 C -0.131 4.131 6 C 0.141 3.859 7 H 0.117 0.883 8 N -0.722 5.722 9 C 0.533 3.467 10 O -0.523 6.523 11 C 0.078 3.922 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.135 4.135 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.496 3.504 25 O -0.519 6.519 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.404 0.596 36 H 0.346 0.654 37 H 0.354 0.646 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 21.776 10.728 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.348 5.348 3 C -0.010 4.010 4 C -0.171 4.171 5 C -0.169 4.169 6 C 0.032 3.968 7 H 0.134 0.866 8 N -0.376 5.376 9 C 0.320 3.680 10 O -0.396 6.396 11 C -0.038 4.038 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.175 4.175 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C 0.282 3.718 25 O -0.393 6.393 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.239 0.761 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.634 21.293 11.803 24.354 hybrid contribution -1.476 -0.388 -1.820 2.375 sum -0.842 20.905 9.983 23.182 Atomic orbital electron populations 1.21742 0.79725 1.04864 1.00945 1.47278 1.07421 1.05868 1.74265 1.21394 0.93105 0.84794 1.01689 1.21850 0.94714 0.99656 1.00865 1.21968 1.01066 0.92448 1.01396 1.20660 0.89916 0.88848 0.97394 0.86572 1.45781 1.69428 1.05840 1.16579 1.20866 0.75951 0.82780 0.88445 1.90634 1.45836 1.81863 1.21295 1.21437 0.99409 0.90585 0.92337 0.88658 1.58761 1.39871 1.08213 1.29433 1.22343 0.96309 1.01368 0.97445 1.19110 0.96733 0.93118 0.92310 1.21205 0.97580 1.25397 1.11784 0.92729 1.25006 0.95688 0.95912 0.97709 1.69953 1.22358 1.29604 1.31442 0.86589 0.82704 0.77582 0.81131 1.20654 1.21150 1.19872 1.20789 0.91488 0.82997 0.76524 1.90776 1.65527 1.35481 1.47534 0.88966 0.92425 0.92320 0.91573 0.90617 0.89064 0.90535 0.89525 0.90301 0.76148 0.84069 0.83113 0.92580 0.92702 0.96385 0.96392 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.48 59.85 0.63 1.31 16 2 N -0.61 -6.48 3.21 -182.86 -0.59 -7.06 16 3 C 0.11 0.70 6.40 -4.49 -0.03 0.67 16 4 C -0.13 -0.68 6.02 -26.59 -0.16 -0.84 16 5 C -0.13 -0.92 5.51 -26.51 -0.15 -1.06 16 6 C 0.14 1.69 2.70 -69.30 -0.19 1.51 16 7 H 0.12 1.53 7.57 -51.93 -0.39 1.14 16 8 N -0.72 -10.03 4.96 -55.15 -0.27 -10.30 16 9 C 0.53 9.59 6.51 -10.99 -0.07 9.52 16 10 O -0.52 -11.14 15.48 4.63 0.07 -11.07 16 11 C 0.08 1.41 3.21 -68.86 -0.22 1.19 16 12 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 13 N -0.83 -15.20 8.94 -5.65 -0.05 -15.25 16 14 C -0.13 -2.88 4.78 -26.73 -0.13 -3.00 16 15 C 0.02 0.62 4.74 -27.88 -0.13 0.48 16 16 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.50 7.11 7.20 -11.87 -0.09 7.03 16 25 O -0.52 -10.17 14.74 4.63 0.07 -10.10 16 26 H 0.09 1.18 6.59 -51.93 -0.34 0.84 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.42 8.13 -51.93 -0.42 -0.01 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.40 4.63 8.59 -40.82 -0.35 4.28 16 36 H 0.35 6.56 8.58 -39.29 -0.34 6.22 16 37 H 0.35 6.41 7.55 -39.29 -0.30 6.11 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -36.45 342.99 -7.52 -43.96 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.69 Total: 10.45 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.94 Total: 3.20 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.17 Total: -58.45 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: 0.14 Total: -21.17 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.45 -7.52 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704361949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.014 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds