Wall clock time and date at job start Tue Mar 31 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45749 * 117.95362 * 2 1 4 4 C 1.52914 * 110.49215 * 160.92042 * 3 2 1 5 5 C 1.53364 * 108.66194 * 50.76455 * 4 3 2 6 6 C 1.53068 * 108.41279 * 292.44561 * 5 4 3 7 7 H 1.08998 * 109.33039 * 288.82471 * 6 5 4 8 8 N 1.46501 * 109.40088 * 169.03610 * 6 5 4 9 9 C 1.34777 * 119.99862 * 154.56979 * 8 6 5 10 10 O 1.21282 * 120.00142 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99986 * 180.02562 * 9 8 6 12 12 H 1.09001 * 109.47087 * 40.00373 * 11 9 8 13 13 N 1.46905 * 109.47121 * 160.00176 * 11 9 8 14 14 C 1.52998 * 109.47064 * 280.00094 * 11 9 8 15 15 C 1.53004 * 109.47139 * 174.99796 * 14 11 9 16 16 C 1.50698 * 109.47137 * 179.97438 * 15 14 11 17 17 H 1.08002 * 120.00164 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00019 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00123 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00122 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47173 * 90.00290 * 20 18 16 22 22 H 1.48506 * 109.47063 * 209.99803 * 20 18 16 23 23 H 1.48498 * 109.47038 * 329.99995 * 20 18 16 24 24 C 1.33358 * 117.94487 * 179.97438 * 2 1 3 25 25 O 1.21286 * 118.24380 * 2.22755 * 24 2 1 26 26 H 1.08996 * 109.47553 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46860 * 300.02691 * 1 2 3 28 28 H 1.09004 * 109.46548 * 60.02339 * 1 2 3 29 29 H 1.09001 * 109.30082 * 281.23857 * 3 2 1 30 30 H 1.09005 * 109.29900 * 40.81203 * 3 2 1 31 31 H 1.08998 * 109.60457 * 170.50838 * 4 3 2 32 32 H 1.08998 * 109.60350 * 290.83247 * 4 3 2 33 33 H 1.08999 * 109.67504 * 172.71573 * 5 4 3 34 34 H 1.09004 * 109.68702 * 52.17943 * 5 4 3 35 35 H 0.96998 * 120.00427 * 334.57504 * 8 6 5 36 36 H 1.00901 * 110.99869 * 60.00289 * 13 11 9 37 37 H 1.00896 * 110.99543 * 183.95412 * 13 11 9 38 38 H 1.08995 * 109.47368 * 294.99520 * 14 11 9 39 39 H 1.09001 * 109.47446 * 54.99927 * 14 11 9 40 40 H 1.08994 * 109.47287 * 300.00153 * 15 14 11 41 41 H 1.09004 * 109.46568 * 60.00209 * 15 14 11 42 42 H 0.96998 * 120.00540 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2874 0.0000 4 6 3.5949 1.1258 0.4682 5 6 4.2492 -0.0016 -0.3400 6 6 3.5838 -1.3241 0.0487 7 1 3.8884 -1.5981 1.0588 8 7 4.0007 -2.3719 -0.8865 9 6 3.9907 -3.6630 -0.5000 10 8 3.6369 -3.9574 0.6221 11 6 4.4201 -4.7408 -1.4617 12 1 5.2828 -4.3963 -2.0320 13 7 4.7808 -5.9513 -0.7115 14 6 3.2695 -5.0581 -2.4190 15 6 3.7444 -6.0608 -3.4726 16 6 2.6110 -6.3738 -4.4151 17 1 1.6483 -5.9042 -4.2768 18 6 2.8029 -7.2597 -5.4540 19 7 3.9751 -7.8320 -5.6222 20 14 1.3982 -7.6471 -6.6228 21 1 1.4232 -6.6929 -7.7604 22 1 1.5487 -9.0326 -7.1356 23 1 0.1059 -7.5238 -5.9016 24 6 2.0900 -1.1781 0.0005 25 8 1.4158 -2.1855 -0.0406 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5142 0.8897 28 1 -0.3632 0.5135 -0.8903 29 1 2.1400 1.6997 -1.0090 30 1 1.6293 1.9707 0.6724 31 1 4.1385 2.0562 0.3043 32 1 3.6102 0.8753 1.5289 33 1 5.3142 -0.0458 -0.1124 34 1 4.1084 0.1809 -1.4053 35 1 4.2841 -2.1365 -1.7837 36 1 3.9971 -6.2907 -0.1742 37 1 5.1334 -6.6674 -1.3286 38 1 2.4383 -5.4861 -1.8588 39 1 2.9428 -4.1418 -2.9107 40 1 4.5757 -5.6329 -4.0329 41 1 4.0711 -6.9771 -2.9808 42 1 4.1101 -8.4555 -6.3529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704361949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:46 Heat of formation + Delta-G solvation = -109.338640 kcal Electronic energy + Delta-G solvation = -22916.751087 eV Core-core repulsion = 19508.916687 eV Total energy + Delta-G solvation = -3407.834400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92531 -40.47963 -37.59546 -37.19265 -36.28334 -34.85873 -33.56619 -31.71082 -30.16721 -28.12835 -28.04634 -25.99176 -24.47521 -23.36165 -22.40330 -21.17102 -19.86092 -18.84940 -18.13267 -18.10773 -17.69364 -17.32266 -16.57875 -16.25173 -16.00280 -15.76429 -15.46046 -15.13981 -14.82827 -14.62572 -14.56662 -14.36355 -13.97169 -13.62474 -13.47078 -13.21807 -12.99887 -12.95628 -12.71391 -12.54925 -12.42611 -12.25523 -11.86090 -11.84085 -11.73145 -11.33507 -11.20005 -10.74839 -10.57948 -10.06086 -9.73238 -9.68536 -8.23633 -6.34085 1.35696 1.37106 1.38167 1.49172 1.60477 2.02326 2.25006 2.38510 3.09355 3.49888 3.58295 3.72167 3.76402 3.85110 4.00286 4.08534 4.23055 4.28703 4.41014 4.47967 4.59988 4.61845 4.67011 4.79088 4.82947 4.91858 5.03769 5.04422 5.06060 5.22921 5.36672 5.43127 5.44435 5.62414 5.77853 6.02337 6.19760 6.36779 6.43782 6.48194 6.79918 7.10753 7.24868 7.34701 8.87132 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.003900 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.455163 B = 7177.936569 C = 7923.152627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.102 3.898 4 C -0.127 4.127 5 C -0.121 4.121 6 C 0.138 3.862 7 H 0.102 0.898 8 N -0.708 5.708 9 C 0.531 3.469 10 O -0.561 6.561 11 C 0.084 3.916 12 H 0.118 0.882 13 N -0.827 5.827 14 C -0.116 4.116 15 C 0.033 3.967 16 C -0.549 4.549 17 H 0.047 0.953 18 C 0.009 3.991 19 N -0.924 5.924 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.273 1.273 24 C 0.486 3.514 25 O -0.587 6.587 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.341 0.659 37 H 0.354 0.646 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.008 0.992 41 H 0.004 0.996 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 24.705 10.119 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C -0.019 4.019 4 C -0.165 4.165 5 C -0.159 4.159 6 C 0.029 3.971 7 H 0.119 0.881 8 N -0.362 5.362 9 C 0.318 3.682 10 O -0.438 6.438 11 C -0.032 4.032 12 H 0.135 0.865 13 N -0.358 5.358 14 C -0.156 4.156 15 C -0.005 4.005 16 C -0.586 4.586 17 H 0.066 0.934 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.784 3.216 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.197 1.197 24 C 0.272 3.728 25 O -0.467 6.467 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.254 0.746 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.022 0.978 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.986 24.327 11.174 26.788 hybrid contribution -1.601 -1.209 -1.612 2.573 sum -0.615 23.118 9.562 25.025 Atomic orbital electron populations 1.21822 0.79532 1.03088 1.03183 1.47464 1.07933 1.06491 1.71970 1.21815 0.93744 0.82707 1.03595 1.21911 0.94080 1.00296 1.00221 1.22019 1.01699 0.89810 1.02405 1.20906 0.89144 0.90604 0.96401 0.88051 1.45651 1.67918 1.05061 1.17525 1.20753 0.75662 0.84046 0.87741 1.90615 1.47673 1.82707 1.22829 1.21400 0.98766 0.90986 0.92022 0.86463 1.58783 1.39466 1.08337 1.29193 1.22074 0.96640 1.00139 0.96790 1.18960 0.95565 0.93377 0.92556 1.21582 0.98175 1.25944 1.12947 0.93433 1.25835 0.98288 0.95582 0.99317 1.70050 1.24141 1.30003 1.32172 0.85543 0.79306 0.77778 0.79006 1.19399 1.20359 1.19742 1.21226 0.92270 0.83270 0.75984 1.90752 1.66938 1.37925 1.51076 0.92736 0.89867 0.90277 0.89745 0.88124 0.85432 0.90844 0.87718 0.89153 0.74618 0.84620 0.83134 0.94946 0.92425 0.97393 0.97758 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 10.48 127.77 1.34 2.59 16 2 N -0.61 -11.91 3.21 -851.63 -2.73 -14.65 16 3 C 0.10 0.88 6.40 86.49 0.55 1.44 16 4 C -0.13 -0.80 6.02 30.69 0.18 -0.61 16 5 C -0.12 -1.32 5.51 30.74 0.17 -1.15 16 6 C 0.14 3.22 2.70 44.10 0.12 3.34 16 7 H 0.10 2.69 7.57 -2.39 -0.02 2.67 16 8 N -0.71 -19.36 4.96 -446.78 -2.22 -21.58 16 9 C 0.53 19.43 6.51 87.66 0.57 20.00 16 10 O -0.56 -24.78 15.48 -2.15 -0.03 -24.81 16 11 C 0.08 3.07 3.21 44.17 0.14 3.21 16 12 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 13 N -0.83 -30.91 8.94 -171.79 -1.54 -32.44 16 14 C -0.12 -5.10 4.78 30.59 0.15 -4.95 16 15 C 0.03 1.68 4.74 29.85 0.14 1.83 16 16 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 17 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 18 C 0.01 0.49 5.46 84.65 0.46 0.95 16 19 N -0.92 -55.15 13.29 21.45 0.28 -54.86 16 20 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.49 13.99 7.20 87.71 0.63 14.62 16 25 O -0.59 -24.23 14.74 -2.16 -0.03 -24.26 16 26 H 0.05 1.47 6.59 -2.39 -0.02 1.45 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.44 8.11 -2.38 -0.02 0.43 16 31 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.07 0.56 8.13 -2.39 -0.02 0.54 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.42 9.00 8.59 -92.71 -0.80 8.20 16 36 H 0.34 13.45 8.58 -89.69 -0.77 12.68 16 37 H 0.35 13.10 7.55 -89.70 -0.68 12.43 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.00 0.22 6.87 -2.39 -0.02 0.21 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -82.48 342.99 -0.74 -83.22 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -1.20 Total: 32.78 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 4.69 Total: 9.74 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -6.20 Total: -123.53 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.07 Total: -49.07 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -82.48 -0.74 -83.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704361949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.115 kcal (2) G-P(sol) polarization free energy of solvation -82.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds