Wall clock time and date at job start Tue Mar 31 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45752 * 117.94676 * 2 1 4 4 C 1.52925 * 110.32049 * 199.19893 * 3 2 1 5 5 C 1.53266 * 108.71493 * 308.95081 * 4 3 2 6 6 C 1.53069 * 108.24899 * 67.81107 * 5 4 3 7 7 H 1.08999 * 109.32758 * 71.12191 * 6 5 4 8 8 N 1.46497 * 109.40194 * 190.90179 * 6 5 4 9 9 C 1.34773 * 120.00244 * 205.42679 * 8 6 5 10 10 O 1.21286 * 120.00166 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00111 * 180.02562 * 9 8 6 12 12 H 1.08998 * 109.47237 * 40.00831 * 11 9 8 13 13 N 1.46901 * 109.47100 * 160.00523 * 11 9 8 14 14 C 1.52997 * 109.47656 * 280.00490 * 11 9 8 15 15 C 1.52998 * 109.47569 * 175.00053 * 14 11 9 16 16 C 1.50701 * 109.47234 * 180.02562 * 15 14 11 17 17 H 1.07998 * 119.99836 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00239 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00050 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47141 * 89.99701 * 20 18 16 22 22 H 1.48496 * 109.47116 * 209.99797 * 20 18 16 23 23 H 1.48505 * 109.46943 * 329.99916 * 20 18 16 24 24 C 1.33349 * 117.94627 * 180.02562 * 2 1 3 25 25 O 1.21286 * 118.24677 * 357.73316 * 24 2 1 26 26 H 1.09004 * 109.47225 * 89.99883 * 1 2 3 27 27 H 1.09000 * 109.47126 * 210.00466 * 1 2 3 28 28 H 1.09005 * 109.46807 * 329.99906 * 1 2 3 29 29 H 1.09002 * 109.30196 * 319.41032 * 3 2 1 30 30 H 1.08998 * 109.29923 * 78.99165 * 3 2 1 31 31 H 1.09004 * 109.60143 * 68.89990 * 4 3 2 32 32 H 1.09000 * 109.60431 * 189.38543 * 4 3 2 33 33 H 1.09008 * 109.81606 * 308.10590 * 5 4 3 34 34 H 1.08997 * 109.73811 * 187.48191 * 5 4 3 35 35 H 0.97001 * 119.99650 * 25.44057 * 8 6 5 36 36 H 1.00897 * 111.00492 * 60.00276 * 13 11 9 37 37 H 1.00898 * 111.00413 * 183.95974 * 13 11 9 38 38 H 1.08997 * 109.46949 * 295.00223 * 14 11 9 39 39 H 1.09003 * 109.46892 * 54.99415 * 14 11 9 40 40 H 1.09007 * 109.46989 * 299.99891 * 15 14 11 41 41 H 1.08993 * 109.47057 * 60.00054 * 15 14 11 42 42 H 0.97005 * 120.00103 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5934 1.1220 -0.4716 5 6 4.2494 -0.0015 0.3387 6 6 3.5837 -1.3241 -0.0495 7 1 3.8878 -1.5981 -1.0598 8 7 4.0014 -2.3719 0.8853 9 6 3.9910 -3.6630 0.4989 10 8 3.6363 -3.9574 -0.6229 11 6 4.4200 -4.7408 1.4607 12 1 4.0370 -4.5136 2.4556 13 7 3.8874 -6.0353 1.0149 14 6 5.9479 -4.8062 1.5052 15 6 6.3846 -5.8125 2.5717 16 6 7.8896 -5.8764 2.6159 17 1 8.4760 -5.2610 1.9496 18 6 8.5180 -6.7203 3.5068 19 7 9.8313 -6.7764 3.5450 20 14 7.5038 -7.7841 4.6598 21 1 7.2192 -9.0879 4.0084 22 1 8.2611 -8.0134 5.9164 23 1 6.2248 -7.0966 4.9710 24 6 2.0900 -1.1780 -0.0005 25 8 1.4159 -2.1854 0.0413 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6268 1.9720 -0.6693 30 1 2.1434 1.6978 1.0098 31 1 3.6053 0.8670 -1.5313 32 1 4.1394 2.0515 -0.3105 33 1 4.1092 0.1810 1.4042 34 1 5.3144 -0.0459 0.1111 35 1 4.2852 -2.1363 1.7824 36 1 4.2281 -6.2689 0.0944 37 1 4.1067 -6.7641 1.6773 38 1 6.3266 -5.1202 0.5326 39 1 6.3467 -3.8216 1.7496 40 1 6.0060 -5.4984 3.5444 41 1 5.9859 -6.7970 2.3272 42 1 10.2734 -7.3704 4.1717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704361951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:49 Heat of formation + Delta-G solvation = -76.795073 kcal Electronic energy + Delta-G solvation = -22788.721322 eV Core-core repulsion = 19382.298118 eV Total energy + Delta-G solvation = -3406.423205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95512 -39.23194 -36.71684 -35.83253 -35.11151 -32.81221 -32.68253 -30.28147 -29.30436 -27.38099 -26.76777 -24.57882 -23.12919 -22.66855 -20.52813 -19.90734 -19.01096 -17.40391 -17.15169 -16.77650 -16.60108 -16.44648 -15.39440 -14.77569 -14.55200 -14.30179 -14.23002 -14.15266 -13.90554 -13.74763 -13.16837 -12.88691 -12.84101 -12.64446 -12.52126 -12.25949 -11.89230 -11.80230 -11.63281 -11.32340 -11.27222 -10.95687 -10.31435 -10.17405 -10.07410 -9.84913 -9.34193 -9.30070 -8.97430 -8.92312 -8.61006 -8.22671 -6.10908 -4.10272 2.40360 2.66277 3.07775 3.26675 3.29917 3.34765 3.36695 4.26157 4.29299 4.31811 4.38999 4.44398 4.89690 4.90446 5.02512 5.04727 5.11998 5.14106 5.22499 5.28394 5.37717 5.41845 5.53268 5.56032 5.62772 5.65394 5.74545 6.12931 6.17073 6.35571 6.39659 6.68734 7.11259 7.20124 7.24793 7.38802 7.64823 7.69014 7.85914 8.05376 8.45381 8.50567 8.93051 9.50687 11.02295 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.003490 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.105102 B = 8020.789495 C = 8487.765471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.113 3.887 4 C -0.133 4.133 5 C -0.131 4.131 6 C 0.140 3.860 7 H 0.117 0.883 8 N -0.721 5.721 9 C 0.533 3.467 10 O -0.521 6.521 11 C 0.075 3.925 12 H 0.095 0.905 13 N -0.829 5.829 14 C -0.129 4.129 15 C -0.011 4.011 16 C -0.523 4.523 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.497 3.503 25 O -0.521 6.521 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.404 0.596 36 H 0.348 0.652 37 H 0.350 0.650 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.012 0.988 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.994 19.497 -5.314 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.349 5.349 3 C -0.010 4.010 4 C -0.171 4.171 5 C -0.170 4.170 6 C 0.031 3.969 7 H 0.135 0.865 8 N -0.376 5.376 9 C 0.320 3.680 10 O -0.394 6.394 11 C -0.040 4.040 12 H 0.113 0.887 13 N -0.361 5.361 14 C -0.169 4.169 15 C -0.049 4.049 16 C -0.561 4.561 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C 0.282 3.718 25 O -0.395 6.395 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.239 0.761 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.164 18.943 -5.977 25.609 hybrid contribution 0.754 -0.602 1.097 1.461 sum -15.409 18.341 -4.880 24.447 Atomic orbital electron populations 1.21669 0.79725 1.03210 1.01914 1.47332 1.07347 1.05937 1.74236 1.21442 0.93205 0.84717 1.01641 1.21843 0.94614 0.99790 1.00892 1.21969 1.01314 0.92360 1.01320 1.20679 0.89873 0.88870 0.97442 0.86548 1.45751 1.69254 1.05822 1.16727 1.20747 0.75729 0.82796 0.88716 1.90645 1.45565 1.81827 1.21356 1.21469 0.95591 0.89759 0.97191 0.88659 1.58680 1.66141 1.03224 1.08038 1.22209 0.91429 1.01760 1.01508 1.19579 0.97720 0.93770 0.93792 1.21071 0.89478 1.24684 1.20866 0.91059 1.25038 0.94808 0.96632 0.96968 1.69910 1.08031 1.38651 1.37429 0.86771 0.80712 0.81145 0.80611 1.20201 1.21348 1.18944 1.20769 0.91438 0.82899 0.76664 1.90777 1.65703 1.35464 1.47512 0.92784 0.90181 0.91412 0.90545 0.91561 0.90472 0.89000 0.90310 0.89308 0.76125 0.83873 0.83571 0.92050 0.91882 0.96341 0.97011 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.24 59.85 0.61 1.28 16 2 N -0.61 -5.91 3.21 -182.85 -0.59 -6.50 16 3 C 0.11 0.63 6.33 -4.48 -0.03 0.60 16 4 C -0.13 -0.67 6.00 -26.63 -0.16 -0.83 16 5 C -0.13 -0.93 5.52 -26.56 -0.15 -1.08 16 6 C 0.14 1.64 2.69 -69.30 -0.19 1.46 16 7 H 0.12 1.53 7.57 -51.93 -0.39 1.13 16 8 N -0.72 -9.65 4.96 -55.15 -0.27 -9.92 16 9 C 0.53 9.25 6.51 -10.99 -0.07 9.18 16 10 O -0.52 -10.81 15.48 4.62 0.07 -10.73 16 11 C 0.08 1.29 3.21 -68.87 -0.22 1.07 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -14.53 8.93 -5.66 -0.05 -14.58 16 14 C -0.13 -2.46 4.78 -26.73 -0.13 -2.59 16 15 C -0.01 -0.25 3.81 -27.88 -0.11 -0.36 16 16 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 20 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 24 C 0.50 6.68 7.20 -11.88 -0.09 6.60 16 25 O -0.52 -9.59 14.97 4.62 0.07 -9.52 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.87 7.13 -51.93 -0.37 0.50 16 28 H 0.07 0.38 8.01 -51.93 -0.42 -0.04 16 29 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.50 8.10 -51.92 -0.42 0.07 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 4.38 8.59 -40.82 -0.35 4.03 16 36 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 37 H 0.35 5.82 7.55 -39.29 -0.30 5.53 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 41 H 0.01 0.26 6.30 -51.93 -0.33 -0.07 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -36.85 339.70 -7.17 -44.02 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.67 Total: 9.92 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.95 Total: 2.28 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.14 Total: -57.67 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.14 Total: -20.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.85 -7.17 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704361951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.773 kcal (2) G-P(sol) polarization free energy of solvation -36.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds