Wall clock time and date at job start Tue Mar 31 2020 03:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45756 * 117.94417 * 2 1 4 4 C 1.52925 * 110.48661 * 160.92678 * 3 2 1 5 5 C 1.53364 * 108.65812 * 50.76330 * 4 3 2 6 6 C 1.53075 * 108.41636 * 292.44170 * 5 4 3 7 7 H 1.08994 * 109.33328 * 288.83119 * 6 5 4 8 8 N 1.46496 * 109.40033 * 169.04065 * 6 5 4 9 9 C 1.34778 * 119.99982 * 154.57839 * 8 6 5 10 10 O 1.21287 * 119.99550 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00347 * 180.02562 * 9 8 6 12 12 H 1.09006 * 109.46689 * 319.99501 * 11 9 8 13 13 N 1.46899 * 109.46846 * 199.99763 * 11 9 8 14 14 C 1.52996 * 109.47032 * 79.99627 * 11 9 8 15 15 C 1.52998 * 109.46929 * 185.00304 * 14 11 9 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46683 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47426 * 119.99743 * 20 18 16 23 23 H 1.48501 * 109.46833 * 239.99986 * 20 18 16 24 24 C 1.33347 * 117.94555 * 179.97438 * 2 1 3 25 25 O 1.21279 * 118.24829 * 2.22000 * 24 2 1 26 26 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47118 * 300.01475 * 1 2 3 28 28 H 1.09001 * 109.47683 * 60.01984 * 1 2 3 29 29 H 1.09004 * 109.30075 * 281.23770 * 3 2 1 30 30 H 1.08996 * 109.29821 * 40.82228 * 3 2 1 31 31 H 1.08993 * 109.60357 * 170.50782 * 4 3 2 32 32 H 1.08997 * 109.59997 * 290.83858 * 4 3 2 33 33 H 1.09003 * 109.66869 * 172.72139 * 5 4 3 34 34 H 1.09000 * 109.69105 * 52.18110 * 5 4 3 35 35 H 0.97006 * 120.00297 * 334.57286 * 8 6 5 36 36 H 1.00897 * 111.00222 * 299.99256 * 13 11 9 37 37 H 1.00891 * 111.00353 * 63.95436 * 13 11 9 38 38 H 1.09000 * 109.47441 * 65.00394 * 14 11 9 39 39 H 1.09002 * 109.47087 * 304.99840 * 14 11 9 40 40 H 1.09001 * 109.47671 * 60.00109 * 15 14 11 41 41 H 1.08998 * 109.47454 * 300.00107 * 15 14 11 42 42 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5949 1.1260 0.4681 5 6 4.2491 -0.0012 -0.3402 6 6 3.5838 -1.3240 0.0485 7 1 3.8885 -1.5980 1.0584 8 7 4.0008 -2.3716 -0.8868 9 6 3.9908 -3.6628 -0.5005 10 8 3.6369 -3.9573 0.6217 11 6 4.4202 -4.7405 -1.4623 12 1 4.0372 -4.5132 -2.4572 13 7 3.8879 -6.0351 -1.0166 14 6 5.9482 -4.8053 -1.5065 15 6 6.3853 -5.8115 -2.5730 16 6 7.8904 -5.8749 -2.6171 17 1 8.4764 -5.2588 -1.9512 18 6 8.5190 -6.7231 -3.5037 19 7 7.8052 -7.4773 -4.3108 20 14 10.3846 -6.8022 -3.5578 21 1 10.9490 -5.8623 -2.5562 22 1 10.8307 -8.1840 -3.2471 23 1 10.8570 -6.4226 -4.9135 24 6 2.0899 -1.1780 0.0005 25 8 1.4158 -2.1854 -0.0404 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8898 28 1 -0.3634 0.5135 -0.8901 29 1 2.1397 1.6998 -1.0090 30 1 1.6291 1.9706 0.6725 31 1 4.1383 2.0564 0.3042 32 1 3.6102 0.8754 1.5288 33 1 5.3142 -0.0454 -0.1127 34 1 4.1082 0.1813 -1.4056 35 1 4.2841 -2.1361 -1.7842 36 1 4.2286 -6.2686 -0.0960 37 1 2.8792 -6.0389 -1.0406 38 1 6.3269 -5.1194 -0.5338 39 1 6.3467 -3.8206 -1.7509 40 1 6.0067 -5.4975 -3.5457 41 1 5.9868 -6.7961 -2.3287 42 1 8.2475 -8.0743 -4.9344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704361953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:51 Heat of formation + Delta-G solvation = -109.456645 kcal Electronic energy + Delta-G solvation = -22737.003818 eV Core-core repulsion = 19329.164301 eV Total energy + Delta-G solvation = -3407.839517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96913 -40.57054 -37.61400 -36.93852 -36.31430 -34.80150 -33.59256 -31.92264 -30.14977 -28.11874 -28.04056 -25.85282 -24.39891 -23.39146 -22.30624 -21.23227 -19.85146 -18.64367 -18.15630 -18.03736 -17.69786 -17.38050 -16.92447 -16.51159 -16.25205 -15.45959 -15.41069 -15.10528 -14.94525 -14.70517 -14.39580 -14.26918 -13.81775 -13.62558 -13.44450 -13.21921 -13.03013 -12.81060 -12.52136 -12.43219 -12.28288 -12.22805 -11.88360 -11.75521 -11.63550 -11.25634 -11.21403 -10.97726 -10.48392 -10.10036 -9.75405 -9.65515 -8.12249 -6.22800 1.33706 1.42814 1.44029 1.51967 1.56770 1.97663 2.28053 2.46232 3.20828 3.46710 3.52425 3.58894 3.76009 3.84808 3.98080 4.11513 4.25833 4.30570 4.40777 4.45650 4.58935 4.64893 4.77396 4.78797 4.90897 4.94214 5.02002 5.04387 5.19376 5.26304 5.33229 5.41860 5.58971 5.85236 5.99800 6.06178 6.31172 6.33280 6.40186 6.47224 6.96159 7.05177 7.16563 7.45435 8.99357 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.003372 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.854415 B = 8301.043819 C = 8929.209058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.604 5.604 3 C 0.104 3.896 4 C -0.128 4.128 5 C -0.124 4.124 6 C 0.134 3.866 7 H 0.097 0.903 8 N -0.705 5.705 9 C 0.495 3.505 10 O -0.572 6.572 11 C 0.087 3.913 12 H 0.105 0.895 13 N -0.817 5.817 14 C -0.079 4.079 15 C 0.038 3.962 16 C -0.541 4.541 17 H 0.059 0.941 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.277 1.277 24 C 0.491 3.509 25 O -0.586 6.586 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.417 0.583 36 H 0.345 0.655 37 H 0.343 0.657 38 H 0.044 0.956 39 H 0.073 0.927 40 H -0.006 1.006 41 H 0.003 0.997 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 24.969 7.853 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.337 5.337 3 C -0.017 4.017 4 C -0.166 4.166 5 C -0.162 4.162 6 C 0.025 3.975 7 H 0.115 0.885 8 N -0.358 5.358 9 C 0.281 3.719 10 O -0.451 6.451 11 C -0.029 4.029 12 H 0.123 0.877 13 N -0.346 5.346 14 C -0.117 4.117 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.185 1.185 22 H -0.209 1.209 23 H -0.203 1.203 24 C 0.278 3.722 25 O -0.466 6.466 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.255 0.745 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.012 0.988 41 H 0.021 0.979 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.020 23.814 7.870 27.395 hybrid contribution 0.203 -0.102 0.245 0.334 sum -10.817 23.712 8.115 27.297 Atomic orbital electron populations 1.21843 0.79236 1.03266 1.03248 1.47449 1.08063 1.06382 1.71807 1.21802 0.93457 0.82794 1.03690 1.21910 0.94361 1.00215 1.00124 1.22023 1.01523 0.90121 1.02505 1.20901 0.89561 0.90676 0.96343 0.88506 1.45818 1.67183 1.05286 1.17542 1.22382 0.75561 0.85012 0.88995 1.90632 1.48775 1.82866 1.22784 1.21644 0.97752 0.86241 0.97261 0.87715 1.59013 1.13956 1.27923 1.33662 1.21390 0.90053 1.00605 0.99685 1.18842 0.94168 0.94319 0.92610 1.21761 0.93572 1.23087 1.19475 0.92315 1.25942 1.03362 0.95209 0.95335 1.70128 1.37187 1.26375 1.23511 0.85443 0.79736 0.77927 0.78174 1.18539 1.20885 1.20274 1.21044 0.91898 0.83337 0.75967 1.90708 1.66811 1.37772 1.51293 0.92386 0.90057 0.90065 0.89527 0.88086 0.85639 0.91027 0.88364 0.88956 0.74525 0.84175 0.84449 0.93763 0.90798 0.98798 0.97858 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 10.48 127.77 1.34 2.37 16 2 N -0.60 -10.40 3.21 -851.60 -2.73 -13.13 16 3 C 0.10 0.75 6.40 86.49 0.55 1.31 16 4 C -0.13 -0.80 6.02 30.69 0.18 -0.61 16 5 C -0.12 -1.39 5.51 30.74 0.17 -1.22 16 6 C 0.13 3.01 2.70 44.11 0.12 3.13 16 7 H 0.10 2.56 7.57 -2.39 -0.02 2.54 16 8 N -0.71 -18.43 4.96 -446.76 -2.22 -20.64 16 9 C 0.49 17.11 6.50 87.66 0.57 17.68 16 10 O -0.57 -23.70 15.48 -2.16 -0.03 -23.73 16 11 C 0.09 3.15 3.15 44.17 0.14 3.29 16 12 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 13 N -0.82 -30.99 8.44 -171.80 -1.45 -32.44 16 14 C -0.08 -3.25 4.78 30.59 0.15 -3.11 16 15 C 0.04 2.00 4.86 29.85 0.15 2.15 16 16 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 18 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 19 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 20 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 C 0.49 12.83 7.20 87.72 0.63 13.46 16 25 O -0.59 -21.66 14.74 -2.13 -0.03 -21.69 16 26 H 0.06 1.33 6.59 -2.39 -0.02 1.31 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.32 8.10 -2.39 -0.02 0.30 16 31 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.07 0.56 8.13 -2.39 -0.02 0.54 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.42 8.66 8.59 -92.70 -0.80 7.87 16 36 H 0.34 13.23 8.58 -89.70 -0.77 12.46 16 37 H 0.34 11.99 9.06 -89.70 -0.81 11.17 16 38 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 42 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -82.33 344.94 -0.80 -83.13 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -1.34 Total: 30.90 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 4.69 Total: 8.23 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -6.11 Total: -123.39 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.06 Total: -45.43 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -82.33 -0.80 -83.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704361953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.326 kcal (2) G-P(sol) polarization free energy of solvation -82.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds