Wall clock time and date at job start Tue Mar 31 2020 02:34:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46506 * 109.46904 * 2 1
4 4 C 1.46760 * 124.34669 * 89.99982 * 3 2 1
5 5 C 1.54480 * 105.54782 * 162.91674 * 4 3 2
6 6 C 1.54861 * 101.66110 * 25.43666 * 5 4 3
7 7 H 1.08998 * 110.46775 * 216.51886 * 6 5 4
8 8 N 1.46498 * 110.60486 * 93.93074 * 6 5 4
9 9 C 1.34779 * 119.99899 * 158.68750 * 8 6 5
10 10 O 1.21280 * 120.00031 * 359.97438 * 9 8 6
11 11 C 1.50693 * 120.00218 * 180.02562 * 9 8 6
12 12 H 1.09004 * 109.47083 * 40.00000 * 11 9 8
13 13 N 1.46901 * 109.47708 * 159.99779 * 11 9 8
14 14 C 1.53002 * 109.47181 * 280.00165 * 11 9 8
15 15 C 1.52997 * 109.47524 * 174.99704 * 14 11 9
16 16 C 1.50697 * 109.47061 * 179.97438 * 15 14 11
17 17 H 1.07992 * 120.00066 * 0.02562 * 16 15 14
18 18 C 1.37880 * 119.99702 * 179.97438 * 16 15 14
19 19 N 1.31517 * 119.99917 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00040 * 180.02562 * 18 16 15
21 21 H 1.48508 * 109.46914 * 60.00363 * 20 18 16
22 22 H 1.48497 * 109.47264 * 180.02562 * 20 18 16
23 23 H 1.48496 * 109.47222 * 300.00696 * 20 18 16
24 24 C 1.34415 * 124.35027 * 269.97473 * 3 2 1
25 25 O 1.21288 * 124.94382 * 0.45207 * 24 3 2
26 26 H 1.09006 * 109.47496 * 59.99877 * 1 2 3
27 27 H 1.08998 * 109.47059 * 179.97438 * 1 2 3
28 28 H 1.08993 * 109.47483 * 300.00033 * 1 2 3
29 29 H 1.09003 * 109.46934 * 240.00125 * 2 1 3
30 30 H 1.08995 * 109.47116 * 119.99866 * 2 1 3
31 31 H 1.09002 * 110.24740 * 281.96247 * 4 3 2
32 32 H 1.09002 * 110.24616 * 43.87772 * 4 3 2
33 33 H 1.08997 * 110.97017 * 143.57782 * 5 4 3
34 34 H 1.09000 * 110.97126 * 267.34164 * 5 4 3
35 35 H 0.96996 * 120.00161 * 338.69229 * 8 6 5
36 36 H 1.00901 * 110.99552 * 296.04938 * 13 11 9
37 37 H 1.00896 * 110.99401 * 59.99541 * 13 11 9
38 38 H 1.09002 * 109.46921 * 295.00286 * 14 11 9
39 39 H 1.09001 * 109.47017 * 54.99544 * 14 11 9
40 40 H 1.08997 * 109.47115 * 300.00485 * 15 14 11
41 41 H 1.09003 * 109.46590 * 59.99883 * 15 14 11
42 42 H 0.97005 * 119.99810 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2943 2.1620 1.2117
5 6 3.1758 3.3439 0.7510
6 6 2.7701 3.4752 -0.7378
7 1 3.6335 3.7454 -1.3457
8 7 1.7028 4.4662 -0.8958
9 6 1.4960 5.0486 -2.0936
10 8 2.1937 4.7527 -3.0404
11 6 0.3985 6.0684 -2.2561
12 1 0.3655 6.7101 -1.3756
13 7 0.6619 6.8857 -3.4480
14 6 -0.9440 5.3519 -2.4155
15 6 -2.0719 6.3848 -2.4553
16 6 -3.3940 5.6790 -2.6130
17 1 -3.4266 4.6016 -2.6778
18 6 -4.5622 6.4090 -2.6734
19 7 -4.5225 7.7211 -2.5939
20 14 -6.2012 5.5342 -2.8681
21 1 -6.4112 4.6154 -1.7204
22 1 -7.2959 6.5368 -2.9069
23 1 -6.1992 4.7548 -4.1321
24 6 2.2715 2.0962 -1.1097
25 8 2.1217 1.6943 -2.2443
26 1 -0.3634 0.5139 -0.8900
27 1 -0.3633 -1.0276 -0.0005
28 1 -0.3634 0.5138 0.8899
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 1.3636 2.5311 1.6427
32 1 2.8306 1.5525 1.9390
33 1 2.9325 4.2509 1.3043
34 1 4.2342 3.1020 0.8475
35 1 1.1450 4.7032 -0.1385
36 1 1.5115 7.4191 -3.3400
37 1 0.6973 6.3134 -4.2781
38 1 -0.9424 4.7795 -3.3432
39 1 -1.0983 4.6777 -1.5730
40 1 -2.0734 6.9571 -1.5277
41 1 -1.9175 7.0589 -3.2979
42 1 -5.3444 8.2347 -2.6368
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709049719.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:34:18
Heat of formation + Delta-G solvation = -109.807136 kcal
Electronic energy + Delta-G solvation = -22892.428592 eV
Core-core repulsion = 19484.573876 eV
Total energy + Delta-G solvation = -3407.854715 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.95689 -40.55770 -37.68952 -36.88348 -36.09269 -34.82899 -33.56595 -31.95034
-30.24171 -28.72294 -27.67998 -25.41936 -24.52371 -22.83301 -22.40927 -21.31247
-20.44663 -18.79796 -18.24130 -18.14182 -17.53682 -17.03074 -16.72227 -16.52958
-16.17026 -15.68513 -15.32582 -15.04975 -14.84856 -14.60013 -14.50284 -14.29132
-13.84936 -13.78460 -13.62220 -13.43443 -12.84703 -12.80462 -12.56427 -12.45411
-12.38336 -12.29649 -12.03071 -11.79509 -11.69100 -11.48377 -11.28411 -11.02522
-10.49728 -10.09280 -9.79517 -9.64535 -8.14990 -6.25199 1.17325 1.39878
1.42915 1.48979 1.51122 1.98690 2.29453 2.43746 3.17722 3.31346
3.37477 3.54530 3.82803 3.86257 4.06495 4.08322 4.13524 4.22767
4.28634 4.43983 4.54249 4.67426 4.72563 4.78385 4.89162 4.90510
4.93978 5.01761 5.20186 5.22270 5.30379 5.54697 5.58491 5.82905
5.96674 6.02727 6.06055 6.29571 6.36491 6.51413 6.92192 7.05973
7.10902 7.42593 8.95906
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.015731 B = 0.004400 C = 0.003745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1779.551615 B = 6361.976856 C = 7475.301182
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.118 3.882
3 N -0.613 5.613
4 C 0.093 3.907
5 C -0.121 4.121
6 C 0.109 3.891
7 H 0.100 0.900
8 N -0.699 5.699
9 C 0.486 3.514
10 O -0.571 6.571
11 C 0.090 3.910
12 H 0.122 0.878
13 N -0.817 5.817
14 C -0.081 4.081
15 C 0.042 3.958
16 C -0.547 4.547
17 H 0.049 0.951
18 C 0.006 3.994
19 N -0.927 5.927
20 Si 0.957 3.043
21 H -0.265 1.265
22 H -0.280 1.280
23 H -0.275 1.275
24 C 0.487 3.513
25 O -0.576 6.576
26 H 0.019 0.981
27 H 0.084 0.916
28 H 0.071 0.929
29 H 0.058 0.942
30 H 0.121 0.879
31 H 0.087 0.913
32 H 0.118 0.882
33 H 0.129 0.871
34 H 0.119 0.881
35 H 0.421 0.579
36 H 0.349 0.651
37 H 0.342 0.658
38 H 0.030 0.970
39 H 0.062 0.938
40 H 0.001 0.999
41 H 0.006 0.994
42 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.014 -11.323 15.832 25.853
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C -0.003 4.003
3 N -0.347 5.347
4 C -0.028 4.028
5 C -0.159 4.159
6 C 0.000 4.000
7 H 0.118 0.882
8 N -0.354 5.354
9 C 0.271 3.729
10 O -0.450 6.450
11 C -0.026 4.026
12 H 0.140 0.860
13 N -0.346 5.346
14 C -0.119 4.119
15 C 0.005 3.995
16 C -0.586 4.586
17 H 0.067 0.933
18 C -0.192 4.192
19 N -0.567 5.567
20 Si 0.782 3.218
21 H -0.190 1.190
22 H -0.205 1.205
23 H -0.200 1.200
24 C 0.273 3.727
25 O -0.454 6.454
26 H 0.038 0.962
27 H 0.103 0.897
28 H 0.090 0.910
29 H 0.077 0.923
30 H 0.139 0.861
31 H 0.105 0.895
32 H 0.136 0.864
33 H 0.147 0.853
34 H 0.138 0.862
35 H 0.259 0.741
36 H 0.162 0.838
37 H 0.156 0.844
38 H 0.049 0.951
39 H 0.081 0.919
40 H 0.020 0.980
41 H 0.025 0.975
42 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 16.604 -11.301 14.756 24.923
hybrid contribution -0.486 -0.834 -0.589 1.131
sum 16.118 -12.135 14.167 24.653
Atomic orbital electron populations
1.22131 0.95949 1.03114 1.01297 1.21512 0.94212 0.80656 1.03937
1.48552 1.64280 1.14303 1.07573 1.22516 1.00938 0.92995 0.86385
1.23060 1.02490 1.00656 0.89652 1.21729 0.91587 0.85124 1.01554
0.88226 1.45801 1.35868 1.41023 1.12710 1.22606 0.85239 0.82479
0.82551 1.90686 1.49631 1.64348 1.40308 1.21650 0.91808 0.92432
0.96719 0.85998 1.58994 1.43017 1.28715 1.03870 1.21368 0.92531
0.97989 1.00022 1.18806 0.91067 0.93619 0.96017 1.21665 0.93417
0.93235 1.50240 0.93258 1.25841 1.02896 0.95521 0.94920 1.70086
1.28815 1.06448 1.51305 0.85635 0.78914 0.78351 0.78929 1.19026
1.20513 1.20029 1.21922 0.77237 0.89073 0.84503 1.90719 1.54622
1.76185 1.23917 0.96201 0.89706 0.91030 0.92294 0.86120 0.89461
0.86394 0.85317 0.86236 0.74097 0.83769 0.84432 0.95129 0.91906
0.98042 0.97542 0.92808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.06 10.24 71.98 0.74 -2.33 16
2 C 0.12 1.95 6.65 86.38 0.57 2.52 16
3 N -0.61 -11.36 2.93 -817.98 -2.40 -13.76 16
4 C 0.09 0.73 7.34 86.83 0.64 1.37 16
5 C -0.12 -0.92 6.80 31.73 0.22 -0.70 16
6 C 0.11 2.32 3.22 45.07 0.15 2.46 16
7 H 0.10 2.48 7.66 -2.39 -0.02 2.46 16
8 N -0.70 -16.30 5.13 -442.19 -2.27 -18.57 16
9 C 0.49 15.80 7.06 87.65 0.62 16.42 16
10 O -0.57 -23.12 15.96 -3.03 -0.05 -23.17 16
11 C 0.09 3.04 3.15 44.17 0.14 3.18 16
12 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16
13 N -0.82 -28.70 8.44 -171.80 -1.45 -30.15 16
14 C -0.08 -3.43 4.78 30.59 0.15 -3.28 16
15 C 0.04 2.23 4.86 29.85 0.15 2.37 16
16 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16
17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16
18 C 0.01 0.37 5.46 84.65 0.46 0.84 16
19 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16
20 Si 0.96 45.05 29.54 68.60 2.03 47.08 16
21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
23 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16
24 C 0.49 13.89 7.65 87.90 0.67 14.56 16
25 O -0.58 -23.84 17.60 -3.06 -0.05 -23.89 16
26 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16
27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
29 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16
30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16
32 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16
33 H 0.13 0.35 8.04 -2.39 -0.02 0.33 16
34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16
35 H 0.42 7.12 8.58 -92.71 -0.80 6.33 16
36 H 0.35 10.28 9.06 -89.69 -0.81 9.47 16
37 H 0.34 12.82 8.58 -89.70 -0.77 12.05 16
38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16
39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16
40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16
41 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16
42 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16
Total: -1.00 -86.02 353.74 -0.52 -86.54
By element:
Atomic # 1 Polarization: 27.79 SS G_CDS: -1.34 Total: 26.46 kcal
Atomic # 6 Polarization: 1.07 SS G_CDS: 4.73 Total: 5.80 kcal
Atomic # 7 Polarization: -112.98 SS G_CDS: -5.83 Total: -118.81 kcal
Atomic # 8 Polarization: -46.96 SS G_CDS: -0.10 Total: -47.07 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Total: -86.02 -0.52 -86.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709049719.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.263 kcal
(2) G-P(sol) polarization free energy of solvation -86.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.286 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds