Wall clock time and date at job start Tue Mar 31 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99952 * 2 1 4 4 O 1.21276 * 120.00368 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99532 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46495 * 31.10709 * 5 3 2 7 7 C 1.53041 * 109.46283 * 271.13381 * 5 3 2 8 8 C 1.53114 * 109.27829 * 180.80579 * 7 5 3 9 9 C 1.53120 * 109.15870 * 57.65716 * 8 7 5 10 10 C 1.53035 * 109.28107 * 302.34359 * 9 8 7 11 11 N 1.46846 * 109.51971 * 59.17943 * 10 9 8 12 12 C 1.46905 * 110.99715 * 174.16227 * 11 10 9 13 13 C 1.50698 * 109.47355 * 287.82627 * 12 11 10 14 14 O 1.21288 * 119.99851 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00344 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00264 * 179.97438 * 15 13 12 17 17 C 1.50693 * 109.47417 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00222 * 179.72474 * 17 16 15 20 20 N 1.31515 * 119.99901 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99989 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47033 * 90.00013 * 21 19 17 23 23 H 1.48502 * 109.47254 * 210.00040 * 21 19 17 24 24 H 1.48499 * 109.47222 * 329.99919 * 21 19 17 25 25 H 1.09002 * 109.47256 * 300.00373 * 1 2 3 26 26 H 1.08999 * 109.46685 * 60.00196 * 1 2 3 27 27 H 1.08998 * 109.47629 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00000 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.49892 * 300.75459 * 7 5 3 30 30 H 1.09000 * 109.49795 * 60.86199 * 7 5 3 31 31 H 1.08996 * 109.52310 * 177.55939 * 8 7 5 32 32 H 1.08997 * 109.52284 * 297.75128 * 8 7 5 33 33 H 1.09002 * 109.50182 * 62.28473 * 9 8 7 34 34 H 1.09000 * 109.50040 * 182.36155 * 9 8 7 35 35 H 1.08996 * 109.46272 * 299.16662 * 10 9 8 36 36 H 1.08999 * 109.46477 * 179.19793 * 10 9 8 37 37 H 1.09002 * 109.47008 * 167.82447 * 12 11 10 38 38 H 1.09003 * 109.47114 * 47.82460 * 12 11 10 39 39 H 0.97004 * 120.00023 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47055 * 60.00188 * 16 15 13 41 41 H 1.09003 * 109.47108 * 300.00176 * 16 15 13 42 42 H 0.96998 * 119.99550 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0093 0.2871 -0.5300 7 6 4.1553 1.1388 1.4435 8 6 5.6863 1.1591 1.4396 9 6 6.1704 2.4061 0.6944 10 6 5.6027 2.3977 -0.7268 11 7 4.1355 2.3789 -0.6689 12 6 3.5540 2.5099 -2.0116 13 6 3.7428 3.9212 -2.5053 14 8 4.3058 4.7377 -1.8071 15 7 3.2859 4.2761 -3.7225 16 6 3.4689 5.6482 -4.2022 17 6 2.8726 5.7826 -5.5796 18 1 2.4037 4.9312 -6.0505 19 6 2.9200 6.9941 -6.2362 20 7 3.4861 8.0323 -5.6606 21 14 2.1814 7.1604 -7.9439 22 1 0.7556 7.5598 -7.8298 23 1 2.9256 8.1947 -8.7066 24 1 2.2757 5.8591 -8.6530 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.9500 -0.8401 0.0004 29 1 3.7810 2.0116 1.9786 30 1 3.8045 0.2316 1.9354 31 1 6.0529 1.1829 2.4658 32 1 6.0611 0.2668 0.9384 33 1 5.8279 3.2987 1.2178 34 1 7.2596 2.4046 0.6518 35 1 5.9567 1.5119 -1.2540 36 1 5.9340 3.2914 -1.2555 37 1 2.4896 2.2786 -1.9707 38 1 4.0505 1.8177 -2.6917 39 1 2.8353 3.6232 -4.2808 40 1 4.5332 5.8801 -4.2425 41 1 2.9718 6.3401 -3.5224 42 1 3.5191 8.8846 -6.1224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726382554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:09 Heat of formation + Delta-G solvation = -71.257613 kcal Electronic energy + Delta-G solvation = -22958.250985 eV Core-core repulsion = 19552.067902 eV Total energy + Delta-G solvation = -3406.183083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55175 -38.72165 -37.64848 -34.76137 -34.09272 -33.39043 -32.22035 -31.36538 -28.38063 -27.26623 -26.25998 -23.70531 -23.46676 -22.09643 -20.67630 -19.81737 -19.52519 -17.57511 -17.06441 -16.45708 -15.68456 -15.51483 -15.34299 -14.92439 -14.83163 -14.36120 -14.26719 -13.97869 -13.69393 -13.57375 -13.01786 -12.93237 -12.63946 -12.50225 -12.27215 -12.11087 -11.84000 -11.47029 -11.32586 -10.95486 -10.92178 -10.84811 -10.77611 -10.44915 -10.25558 -9.70344 -9.32591 -9.31441 -8.91238 -8.66152 -8.16220 -7.74145 -6.10504 -4.16938 2.51384 2.92018 3.28050 3.33600 3.36088 3.54181 3.66909 4.30516 4.43722 4.54522 4.65704 4.79518 4.88910 4.96143 5.10873 5.14156 5.25302 5.29891 5.36838 5.40044 5.51015 5.58101 5.60000 5.72176 5.73558 5.81418 5.84520 6.02034 6.17810 6.20897 6.35081 6.92639 7.06651 7.31709 7.41728 7.56796 7.62023 7.76085 8.04755 8.12783 8.74621 8.87809 9.25662 9.49963 10.99822 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.003896 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.270552 B = 7185.777958 C = 8233.450631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.741 5.741 3 C 0.509 3.491 4 O -0.505 6.505 5 C 0.073 3.927 6 H 0.056 0.944 7 C -0.104 4.104 8 C -0.118 4.118 9 C -0.117 4.117 10 C 0.058 3.942 11 N -0.495 5.495 12 C 0.032 3.968 13 C 0.505 3.495 14 O -0.536 6.536 15 N -0.717 5.717 16 C 0.252 3.748 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.399 0.601 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.388 0.612 40 H 0.025 0.975 41 H 0.026 0.974 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 -21.918 12.420 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.394 5.394 3 C 0.294 3.706 4 O -0.378 6.378 5 C -0.039 4.039 6 H 0.074 0.926 7 C -0.142 4.142 8 C -0.155 4.155 9 C -0.155 4.155 10 C -0.069 4.069 11 N -0.221 5.221 12 C -0.100 4.100 13 C 0.289 3.711 14 O -0.413 6.413 15 N -0.366 5.366 16 C 0.131 3.869 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.233 0.767 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.073 0.927 39 H 0.220 0.780 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.291 -19.890 13.157 23.849 hybrid contribution -0.295 -1.308 -1.764 2.216 sum -0.005 -21.198 11.393 24.065 Atomic orbital electron populations 1.21528 0.79518 1.02031 1.02579 1.45881 1.07784 1.08625 1.77160 1.20628 0.89884 0.83763 0.76300 1.90796 1.69753 1.30896 1.46324 1.21619 0.91300 0.93113 0.97907 0.92603 1.21523 0.96448 1.02885 0.93390 1.21580 0.94627 0.98483 1.00847 1.21589 0.99703 0.98668 0.95539 1.22224 0.85528 1.01639 0.97523 1.61254 1.07747 1.35014 1.18063 1.22099 1.01774 0.96487 0.89592 1.20125 0.79835 0.89152 0.82020 1.90635 1.42633 1.52353 1.55666 1.46414 1.58287 1.15474 1.16464 1.19060 0.97238 0.76600 0.93963 1.21242 1.39000 0.96758 1.00998 0.91990 1.24951 0.95169 0.95478 0.98433 1.69982 1.43007 1.01265 1.38063 0.86427 0.79136 0.77926 0.83471 1.20478 1.21027 1.19798 0.92222 0.92068 0.90779 0.76748 0.90057 0.91312 0.91375 0.92200 0.90455 0.91369 0.95433 0.88549 0.88189 0.92727 0.78043 0.95666 0.95570 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.85 0.64 1.32 16 2 N -0.74 -6.33 5.71 -67.08 -0.38 -6.71 16 3 C 0.51 6.52 5.68 -10.98 -0.06 6.46 16 4 O -0.51 -9.10 15.38 5.56 0.09 -9.01 16 5 C 0.07 0.84 2.23 -68.87 -0.15 0.69 16 6 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 7 C -0.10 -1.02 5.36 -26.65 -0.14 -1.16 16 8 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 9 C -0.12 -1.34 6.09 -26.65 -0.16 -1.50 16 10 C 0.06 0.81 5.11 -3.84 -0.02 0.79 16 11 N -0.50 -7.66 3.88 -229.51 -0.89 -8.55 16 12 C 0.03 0.52 5.09 -4.97 -0.03 0.50 16 13 C 0.50 11.00 7.52 -10.99 -0.08 10.91 16 14 O -0.54 -13.72 14.87 5.55 0.08 -13.64 16 15 N -0.72 -16.19 5.55 -61.47 -0.34 -16.53 16 16 C 0.25 7.00 5.43 -5.20 -0.03 6.98 16 17 C -0.54 -15.21 9.28 -34.44 -0.32 -15.53 16 18 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.40 2.04 8.83 -40.82 -0.36 1.68 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 1.66 6.38 -51.93 -0.33 1.32 16 37 H 0.10 1.66 5.68 -51.93 -0.29 1.37 16 38 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.39 7.56 8.32 -40.82 -0.34 7.22 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -36.55 342.50 -7.96 -44.51 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.77 Total: 4.56 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.61 Total: 9.95 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.88 Total: -57.85 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.17 Total: -22.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.55 -7.96 -44.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726382554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.752 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds