Wall clock time and date at job start Tue Mar 31 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99952 * 2 1 4 4 O 1.21276 * 120.00368 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99532 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46495 * 31.10709 * 5 3 2 7 7 C 1.53041 * 109.46283 * 271.13381 * 5 3 2 8 8 C 1.53114 * 109.27829 * 180.80579 * 7 5 3 9 9 C 1.53120 * 109.15870 * 57.65716 * 8 7 5 10 10 C 1.53035 * 109.28107 * 302.34359 * 9 8 7 11 11 N 1.46846 * 109.51971 * 59.17943 * 10 9 8 12 12 C 1.46905 * 110.99715 * 174.16227 * 11 10 9 13 13 C 1.50698 * 109.47355 * 287.82627 * 12 11 10 14 14 O 1.21288 * 119.99851 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00344 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00264 * 179.97438 * 15 13 12 17 17 C 1.50693 * 109.47417 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00222 * 179.72474 * 17 16 15 20 20 N 1.31515 * 119.99901 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99989 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47033 * 90.00013 * 21 19 17 23 23 H 1.48502 * 109.47254 * 210.00040 * 21 19 17 24 24 H 1.48499 * 109.47222 * 329.99919 * 21 19 17 25 25 H 1.09002 * 109.47256 * 300.00373 * 1 2 3 26 26 H 1.08999 * 109.46685 * 60.00196 * 1 2 3 27 27 H 1.08998 * 109.47629 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00000 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.49892 * 300.75459 * 7 5 3 30 30 H 1.09000 * 109.49795 * 60.86199 * 7 5 3 31 31 H 1.08996 * 109.52310 * 177.55939 * 8 7 5 32 32 H 1.08997 * 109.52284 * 297.75128 * 8 7 5 33 33 H 1.09002 * 109.50182 * 62.28473 * 9 8 7 34 34 H 1.09000 * 109.50040 * 182.36155 * 9 8 7 35 35 H 1.08996 * 109.46272 * 299.16662 * 10 9 8 36 36 H 1.08999 * 109.46477 * 179.19793 * 10 9 8 37 37 H 1.09002 * 109.47008 * 167.82447 * 12 11 10 38 38 H 1.09003 * 109.47114 * 47.82460 * 12 11 10 39 39 H 0.97004 * 120.00023 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47055 * 60.00188 * 16 15 13 41 41 H 1.09003 * 109.47108 * 300.00176 * 16 15 13 42 42 H 0.96998 * 119.99550 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0093 0.2871 -0.5300 7 6 4.1553 1.1388 1.4435 8 6 5.6863 1.1591 1.4396 9 6 6.1704 2.4061 0.6944 10 6 5.6027 2.3977 -0.7268 11 7 4.1355 2.3789 -0.6689 12 6 3.5540 2.5099 -2.0116 13 6 3.7428 3.9212 -2.5053 14 8 4.3058 4.7377 -1.8071 15 7 3.2859 4.2761 -3.7225 16 6 3.4689 5.6482 -4.2022 17 6 2.8726 5.7826 -5.5796 18 1 2.4037 4.9312 -6.0505 19 6 2.9200 6.9941 -6.2362 20 7 3.4861 8.0323 -5.6606 21 14 2.1814 7.1604 -7.9439 22 1 0.7556 7.5598 -7.8298 23 1 2.9256 8.1947 -8.7066 24 1 2.2757 5.8591 -8.6530 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.9500 -0.8401 0.0004 29 1 3.7810 2.0116 1.9786 30 1 3.8045 0.2316 1.9354 31 1 6.0529 1.1829 2.4658 32 1 6.0611 0.2668 0.9384 33 1 5.8279 3.2987 1.2178 34 1 7.2596 2.4046 0.6518 35 1 5.9567 1.5119 -1.2540 36 1 5.9340 3.2914 -1.2555 37 1 2.4896 2.2786 -1.9707 38 1 4.0505 1.8177 -2.6917 39 1 2.8353 3.6232 -4.2808 40 1 4.5332 5.8801 -4.2425 41 1 2.9718 6.3401 -3.5224 42 1 3.5191 8.8846 -6.1224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726382554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:09 Heat of formation + Delta-G solvation = -102.333907 kcal Electronic energy + Delta-G solvation = -22959.598554 eV Core-core repulsion = 19552.067902 eV Total energy + Delta-G solvation = -3407.530652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61484 -40.29512 -38.81028 -36.13091 -35.65010 -34.53504 -34.28985 -32.28281 -30.09813 -28.35216 -27.65721 -24.97655 -24.56428 -23.78951 -21.59866 -21.34556 -20.69786 -18.96732 -18.49569 -17.65684 -17.37986 -16.92062 -16.64361 -16.36586 -16.11188 -15.71269 -15.44229 -15.14404 -15.03980 -14.56139 -14.29790 -14.11814 -13.95773 -13.93340 -13.75375 -13.30819 -13.07342 -12.91307 -12.84028 -12.65849 -12.36068 -12.23345 -11.86972 -11.63995 -11.50229 -11.42880 -10.81239 -10.73654 -10.64022 -10.12739 -9.82449 -9.25747 -8.30083 -6.47455 1.41350 1.44853 1.55531 1.56088 1.78889 2.08947 2.28706 2.45577 3.01893 3.04320 3.69377 3.78043 3.94892 3.96725 4.08902 4.19466 4.23795 4.28997 4.35448 4.48712 4.53857 4.63124 4.81433 4.85154 4.93827 4.97655 5.02470 5.09490 5.19631 5.22055 5.30067 5.43146 5.46956 5.48078 5.67958 5.83126 5.89221 6.06355 6.59650 6.63280 6.93027 7.22067 7.28969 7.51660 8.82491 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.003896 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.270552 B = 7185.777958 C = 8233.450631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.506 3.494 4 O -0.570 6.570 5 C 0.073 3.927 6 H 0.098 0.902 7 C -0.102 4.102 8 C -0.108 4.108 9 C -0.117 4.117 10 C 0.059 3.941 11 N -0.530 5.530 12 C 0.050 3.950 13 C 0.497 3.503 14 O -0.582 6.582 15 N -0.712 5.712 16 C 0.270 3.730 17 C -0.557 4.557 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.988 3.012 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.253 1.253 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.116 0.884 28 H 0.421 0.579 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.406 0.594 40 H -0.011 1.011 41 H -0.020 1.020 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -26.155 11.632 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.292 3.708 4 O -0.448 6.448 5 C -0.038 4.038 6 H 0.116 0.884 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.155 4.155 10 C -0.068 4.068 11 N -0.256 5.256 12 C -0.081 4.081 13 C 0.284 3.716 14 O -0.462 6.462 15 N -0.363 5.363 16 C 0.147 3.853 17 C -0.595 4.595 18 H 0.102 0.898 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.811 3.189 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.177 1.177 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.135 0.865 28 H 0.258 0.742 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.241 0.759 40 H 0.007 0.993 41 H -0.002 1.002 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.053 -24.249 12.382 27.228 hybrid contribution -0.181 -0.006 -1.415 1.427 sum -0.234 -24.255 10.967 26.621 Atomic orbital electron populations 1.21657 0.78921 1.04317 1.01133 1.45731 1.08224 1.08377 1.74858 1.20971 0.90553 0.83864 0.75443 1.90778 1.70966 1.33385 1.49678 1.21784 0.90394 0.92693 0.98889 0.88417 1.21571 0.97228 1.03124 0.92105 1.21556 0.93645 0.97702 1.01643 1.21592 1.00610 0.99109 0.94159 1.22167 0.84971 1.00765 0.98880 1.61088 1.08601 1.38369 1.17566 1.21889 1.02417 0.92528 0.91220 1.21242 0.78078 0.91344 0.80943 1.90610 1.44390 1.54431 1.56753 1.46179 1.58820 1.13855 1.17434 1.18496 0.94401 0.78634 0.93771 1.21616 1.39172 0.97848 1.00857 0.89836 1.26120 0.95243 0.94813 1.03510 1.70154 1.44379 1.02097 1.40410 0.85114 0.78047 0.78681 0.77094 1.19700 1.20705 1.17699 0.93535 0.93794 0.86528 0.74196 0.93414 0.87690 0.89770 0.89342 0.93760 0.89719 0.92419 0.93070 0.88030 0.88996 0.75934 0.99338 1.00242 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.70 127.77 1.37 2.49 16 2 N -0.72 -10.08 5.71 -484.52 -2.77 -12.85 16 3 C 0.51 12.16 5.68 87.66 0.50 12.66 16 4 O -0.57 -20.97 15.38 -3.02 -0.05 -21.02 16 5 C 0.07 1.50 2.23 44.19 0.10 1.60 16 6 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.10 -1.73 5.36 30.65 0.16 -1.57 16 8 C -0.11 -1.54 6.00 30.67 0.18 -1.36 16 9 C -0.12 -2.59 6.09 30.65 0.19 -2.40 16 10 C 0.06 1.62 5.11 86.33 0.44 2.06 16 11 N -0.53 -16.14 3.88 -880.03 -3.41 -19.56 16 12 C 0.05 1.63 5.09 85.56 0.44 2.07 16 13 C 0.50 22.60 7.52 87.66 0.66 23.26 16 14 O -0.58 -32.01 14.87 -3.05 -0.05 -32.06 16 15 N -0.71 -33.31 5.55 -466.79 -2.59 -35.90 16 16 C 0.27 15.88 5.43 85.63 0.46 16.35 16 17 C -0.56 -31.84 9.28 25.60 0.24 -31.61 16 18 H 0.08 4.31 7.60 -2.91 -0.02 4.29 16 19 C 0.00 0.15 5.46 84.66 0.46 0.61 16 20 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 21 Si 0.99 43.66 29.54 68.60 2.03 45.68 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.42 2.30 8.83 -92.71 -0.82 1.48 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.85 6.38 -2.39 -0.02 1.84 16 37 H 0.10 3.32 5.68 -2.39 -0.01 3.30 16 38 H 0.09 2.28 8.05 -2.39 -0.02 2.26 16 39 H 0.41 15.80 8.32 -92.71 -0.77 15.03 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 42 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -87.69 342.50 -1.91 -89.60 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.56 Total: 19.99 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 5.20 Total: 24.16 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -8.49 Total: -126.36 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.08 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -87.69 -1.91 -89.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726382554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.732 kcal (2) G-P(sol) polarization free energy of solvation -87.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds