Wall clock time and date at job start Tue Mar 31 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47254 * 2 1 4 4 C 1.50703 * 109.47207 * 239.99406 * 2 1 3 5 5 O 1.21274 * 120.00296 * 257.19648 * 4 2 1 6 6 N 1.34780 * 119.99701 * 77.19431 * 4 2 1 7 7 C 1.46504 * 119.99872 * 355.23920 * 6 4 2 8 8 C 1.46490 * 119.99980 * 175.23723 * 6 4 2 9 9 C 1.50701 * 109.47433 * 90.00169 * 8 6 4 10 10 H 1.08003 * 119.99729 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00309 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99785 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99843 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47218 * 89.99983 * 13 11 9 15 15 H 1.48501 * 109.46916 * 209.99491 * 13 11 9 16 16 H 1.48497 * 109.46986 * 329.99560 * 13 11 9 17 17 N 1.46905 * 109.46985 * 119.99956 * 2 1 3 18 18 C 1.45746 * 110.99953 * 307.15124 * 17 2 1 19 19 C 1.51685 * 113.93704 * 167.26969 * 18 17 2 20 20 C 1.53110 * 110.75766 * 66.77280 * 19 18 17 21 21 N 1.47254 * 108.39916 * 274.41474 * 20 19 18 22 22 C 1.33605 * 119.84946 * 69.98664 * 21 20 19 23 23 O 1.21285 * 119.87874 * 180.53878 * 22 21 20 24 24 C 1.46885 * 110.99743 * 181.33172 * 17 2 1 25 25 H 1.09000 * 109.47469 * 187.98431 * 1 2 3 26 26 H 1.09007 * 109.47180 * 307.97844 * 1 2 3 27 27 H 1.08994 * 109.47415 * 67.97832 * 1 2 3 28 28 H 1.09002 * 109.47215 * 91.43569 * 7 6 4 29 29 H 1.08998 * 109.46867 * 211.44006 * 7 6 4 30 30 H 1.09005 * 109.47042 * 331.43858 * 7 6 4 31 31 H 1.09007 * 109.47395 * 210.00072 * 8 6 4 32 32 H 1.08993 * 109.47541 * 329.99757 * 8 6 4 33 33 H 0.96998 * 119.99675 * 180.02562 * 12 11 9 34 34 H 1.09005 * 108.59369 * 288.42325 * 18 17 2 35 35 H 1.09001 * 108.59276 * 46.11676 * 18 17 2 36 36 H 1.08993 * 109.21856 * 306.43806 * 19 18 17 37 37 H 1.09000 * 109.18298 * 187.07328 * 19 18 17 38 38 H 1.09001 * 109.68069 * 154.68921 * 20 19 18 39 39 H 1.09001 * 109.67831 * 34.13331 * 20 19 18 40 40 H 0.97003 * 120.06822 * 249.97407 * 21 20 19 41 41 H 1.09002 * 109.60024 * 330.55754 * 24 17 2 42 42 H 1.08994 * 109.60357 * 90.87650 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4539 -1.8445 -1.1462 6 7 2.0130 -0.0857 -2.4245 7 6 1.4086 1.2433 -2.5460 8 6 2.5964 -0.7354 -3.6006 9 6 1.5412 -1.5559 -4.2966 10 1 0.5365 -1.5903 -3.9018 11 6 1.8584 -2.2627 -5.4371 12 7 0.9375 -2.9792 -6.0441 13 14 3.5963 -2.2038 -6.1194 14 1 4.4017 -3.2965 -5.5175 15 1 3.5552 -2.3739 -7.5941 16 1 4.2136 -0.8942 -5.7892 17 7 2.0196 -0.6925 1.1995 18 6 1.4189 -0.1365 2.4054 19 6 1.6325 -0.9829 3.6459 20 6 3.1125 -1.0085 4.0372 21 7 3.7771 -2.0768 3.2723 22 6 3.9556 -1.9394 1.9553 23 8 4.4942 -2.8233 1.3231 24 6 3.4876 -0.6846 1.2494 25 1 -0.3634 -1.0177 0.1427 26 1 -0.3634 0.6324 0.8101 27 1 -0.3634 0.3853 -0.9526 28 1 2.1721 2.0054 -2.3898 29 1 0.9794 1.3575 -3.5414 30 1 0.6245 1.3557 -1.7972 31 1 2.9758 0.0239 -4.2845 32 1 3.4145 -1.3847 -3.2888 33 1 1.1607 -3.4767 -6.8463 34 1 1.8441 0.8517 2.5816 35 1 0.3472 -0.0257 2.2405 36 1 1.2959 -2.0005 3.4481 37 1 1.0511 -0.5661 4.4683 38 1 3.2066 -1.2083 5.1046 39 1 3.5712 -0.0483 3.8011 40 1 4.0848 -2.8784 3.7236 41 1 3.8878 -0.6642 0.2358 42 1 3.8301 0.1944 1.7955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726790817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:28 Heat of formation + Delta-G solvation = -40.164849 kcal Electronic energy + Delta-G solvation = -23778.279938 eV Core-core repulsion = 20373.445139 eV Total energy + Delta-G solvation = -3404.834799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45868 -39.08820 -37.21317 -35.38338 -34.79974 -32.59385 -31.77278 -31.07892 -28.40893 -26.87431 -26.17422 -25.52824 -23.63395 -21.90352 -20.64451 -19.93759 -18.43709 -17.29252 -16.98256 -16.87077 -16.51419 -16.06178 -15.24568 -14.87067 -14.46663 -14.27560 -13.94150 -13.81873 -13.60098 -13.49586 -12.96983 -12.90283 -12.40170 -12.31798 -12.23338 -11.94914 -11.73974 -11.59453 -11.39542 -11.36022 -11.21666 -10.94824 -10.76197 -10.45443 -10.08002 -9.77634 -9.46690 -9.09861 -8.88292 -8.51794 -8.27199 -7.62339 -6.01956 -3.99993 2.68150 3.32607 3.34900 3.38256 3.40558 3.44091 3.59042 4.08306 4.46413 4.53400 4.58201 4.68119 4.81939 4.97242 5.09841 5.12932 5.14904 5.21874 5.31665 5.36398 5.40409 5.48151 5.57700 5.68857 5.70185 5.83229 5.85457 6.00206 6.11942 6.32797 6.67979 6.82425 6.84325 6.97400 7.05151 7.30440 7.41081 7.68159 8.30774 8.42856 8.54055 9.00738 9.08484 9.58812 11.11627 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.004926 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.075475 B = 5682.473962 C = 6357.852446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 H 0.060 0.940 4 C 0.502 3.498 5 O -0.502 6.502 6 N -0.601 5.601 7 C 0.075 3.925 8 C 0.217 3.783 9 C -0.525 4.525 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.516 5.516 18 C 0.052 3.948 19 C -0.141 4.141 20 C 0.109 3.891 21 N -0.731 5.731 22 C 0.533 3.467 23 O -0.527 6.527 24 C 0.047 3.953 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.031 0.969 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.106 0.894 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 12.735 21.231 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 H 0.078 0.922 4 C 0.286 3.714 5 O -0.375 6.375 6 N -0.335 5.335 7 C -0.068 4.068 8 C 0.097 3.903 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.243 5.243 18 C -0.076 4.076 19 C -0.180 4.180 20 C -0.016 4.016 21 N -0.386 5.386 22 C 0.318 3.682 23 O -0.400 6.400 24 C -0.084 4.084 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.234 0.766 41 H 0.125 0.875 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.180 11.223 20.606 23.494 hybrid contribution 1.010 0.576 -0.217 1.183 sum 2.190 11.799 20.389 23.659 Atomic orbital electron populations 1.21985 0.92068 1.03869 1.02658 1.21602 0.97269 0.95530 0.89432 0.92197 1.20095 0.80291 0.87069 0.83931 1.90789 1.44909 1.16724 1.85099 1.47826 1.58599 1.17795 1.09241 1.21832 0.97301 0.84229 1.03475 1.19642 0.95031 0.93202 0.82437 1.21318 0.97621 1.28118 1.09297 0.90772 1.24852 0.97001 0.94653 0.96496 1.69900 1.33390 1.30679 1.19777 0.86862 0.85479 0.79258 0.78163 1.19835 1.21135 1.19134 1.60355 1.05292 1.57152 1.01490 1.21774 1.01057 0.95416 0.89311 1.21896 0.96432 1.02656 0.96983 1.21762 0.92529 0.91240 0.96046 1.46015 1.61819 1.22208 1.08554 1.20344 0.77626 0.88660 0.81584 1.90786 1.42469 1.41795 1.64949 1.22374 0.88689 0.94696 1.02602 0.90611 0.91756 0.90439 0.93929 0.90532 0.91651 0.95310 0.94672 0.92640 0.95071 0.89524 0.89944 0.89994 0.89619 0.91178 0.76612 0.87538 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.05 37.16 0.30 -1.55 16 2 C 0.07 1.07 1.67 -68.86 -0.12 0.95 16 3 H 0.06 0.72 7.55 -51.93 -0.39 0.33 16 4 C 0.50 10.43 5.79 -10.98 -0.06 10.37 16 5 O -0.50 -13.14 15.02 5.56 0.08 -13.06 16 6 N -0.60 -12.50 2.86 -182.96 -0.52 -13.03 16 7 C 0.08 1.14 9.84 59.85 0.59 1.73 16 8 C 0.22 5.47 4.20 -5.20 -0.02 5.45 16 9 C -0.53 -15.49 9.94 -34.44 -0.34 -15.83 16 10 H 0.07 2.39 8.06 -52.48 -0.42 1.97 16 11 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 12 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 13 Si 0.88 22.33 27.47 -169.99 -4.67 17.67 16 14 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 17 N -0.52 -7.29 3.95 -230.86 -0.91 -8.20 16 18 C 0.05 0.49 4.71 -5.11 -0.02 0.46 16 19 C -0.14 -1.08 5.86 -27.34 -0.16 -1.24 16 20 C 0.11 0.77 6.50 -3.57 -0.02 0.75 16 21 N -0.73 -8.19 5.33 -59.75 -0.32 -8.50 16 22 C 0.53 8.68 7.46 -11.17 -0.08 8.60 16 23 O -0.53 -11.52 17.92 5.55 0.10 -11.42 16 24 C 0.05 0.70 4.67 -4.64 -0.02 0.67 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.57 6.52 -51.93 -0.34 0.23 16 27 H 0.08 0.98 5.83 -51.93 -0.30 0.68 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.07 0.80 4.45 -51.93 -0.23 0.57 16 31 H 0.03 0.69 7.13 -51.92 -0.37 0.32 16 32 H 0.04 0.96 6.92 -51.93 -0.36 0.60 16 33 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 34 H 0.03 0.24 7.78 -51.93 -0.40 -0.17 16 35 H 0.09 0.74 5.52 -51.93 -0.29 0.45 16 36 H 0.08 0.82 8.05 -51.93 -0.42 0.41 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.45 6.77 -51.93 -0.35 0.10 16 40 H 0.40 4.00 8.92 -40.82 -0.36 3.64 16 41 H 0.11 1.92 6.13 -51.93 -0.32 1.60 16 42 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -39.51 326.67 -6.79 -46.30 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.18 Total: 0.56 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -0.06 Total: 12.42 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.98 Total: -57.39 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.18 Total: -24.47 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -39.51 -6.79 -46.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726790817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.132 kcal (2) G-P(sol) polarization free energy of solvation -39.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds