Wall clock time and date at job start Tue Mar 31 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47254 * 2 1 4 4 C 1.50703 * 109.47207 * 239.99406 * 2 1 3 5 5 O 1.21274 * 120.00296 * 257.19648 * 4 2 1 6 6 N 1.34780 * 119.99701 * 77.19431 * 4 2 1 7 7 C 1.46504 * 119.99872 * 355.23920 * 6 4 2 8 8 C 1.46490 * 119.99980 * 175.23723 * 6 4 2 9 9 C 1.50701 * 109.47433 * 90.00169 * 8 6 4 10 10 H 1.08003 * 119.99729 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00309 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99785 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99843 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47218 * 89.99983 * 13 11 9 15 15 H 1.48501 * 109.46916 * 209.99491 * 13 11 9 16 16 H 1.48497 * 109.46986 * 329.99560 * 13 11 9 17 17 N 1.46905 * 109.46985 * 119.99956 * 2 1 3 18 18 C 1.45746 * 110.99953 * 307.15124 * 17 2 1 19 19 C 1.51685 * 113.93704 * 167.26969 * 18 17 2 20 20 C 1.53110 * 110.75766 * 66.77280 * 19 18 17 21 21 N 1.47254 * 108.39916 * 274.41474 * 20 19 18 22 22 C 1.33605 * 119.84946 * 69.98664 * 21 20 19 23 23 O 1.21285 * 119.87874 * 180.53878 * 22 21 20 24 24 C 1.46885 * 110.99743 * 181.33172 * 17 2 1 25 25 H 1.09000 * 109.47469 * 187.98431 * 1 2 3 26 26 H 1.09007 * 109.47180 * 307.97844 * 1 2 3 27 27 H 1.08994 * 109.47415 * 67.97832 * 1 2 3 28 28 H 1.09002 * 109.47215 * 91.43569 * 7 6 4 29 29 H 1.08998 * 109.46867 * 211.44006 * 7 6 4 30 30 H 1.09005 * 109.47042 * 331.43858 * 7 6 4 31 31 H 1.09007 * 109.47395 * 210.00072 * 8 6 4 32 32 H 1.08993 * 109.47541 * 329.99757 * 8 6 4 33 33 H 0.96998 * 119.99675 * 180.02562 * 12 11 9 34 34 H 1.09005 * 108.59369 * 288.42325 * 18 17 2 35 35 H 1.09001 * 108.59276 * 46.11676 * 18 17 2 36 36 H 1.08993 * 109.21856 * 306.43806 * 19 18 17 37 37 H 1.09000 * 109.18298 * 187.07328 * 19 18 17 38 38 H 1.09001 * 109.68069 * 154.68921 * 20 19 18 39 39 H 1.09001 * 109.67831 * 34.13331 * 20 19 18 40 40 H 0.97003 * 120.06822 * 249.97407 * 21 20 19 41 41 H 1.09002 * 109.60024 * 330.55754 * 24 17 2 42 42 H 1.08994 * 109.60357 * 90.87650 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4539 -1.8445 -1.1462 6 7 2.0130 -0.0857 -2.4245 7 6 1.4086 1.2433 -2.5460 8 6 2.5964 -0.7354 -3.6006 9 6 1.5412 -1.5559 -4.2966 10 1 0.5365 -1.5903 -3.9018 11 6 1.8584 -2.2627 -5.4371 12 7 0.9375 -2.9792 -6.0441 13 14 3.5963 -2.2038 -6.1194 14 1 4.4017 -3.2965 -5.5175 15 1 3.5552 -2.3739 -7.5941 16 1 4.2136 -0.8942 -5.7892 17 7 2.0196 -0.6925 1.1995 18 6 1.4189 -0.1365 2.4054 19 6 1.6325 -0.9829 3.6459 20 6 3.1125 -1.0085 4.0372 21 7 3.7771 -2.0768 3.2723 22 6 3.9556 -1.9394 1.9553 23 8 4.4942 -2.8233 1.3231 24 6 3.4876 -0.6846 1.2494 25 1 -0.3634 -1.0177 0.1427 26 1 -0.3634 0.6324 0.8101 27 1 -0.3634 0.3853 -0.9526 28 1 2.1721 2.0054 -2.3898 29 1 0.9794 1.3575 -3.5414 30 1 0.6245 1.3557 -1.7972 31 1 2.9758 0.0239 -4.2845 32 1 3.4145 -1.3847 -3.2888 33 1 1.1607 -3.4767 -6.8463 34 1 1.8441 0.8517 2.5816 35 1 0.3472 -0.0257 2.2405 36 1 1.2959 -2.0005 3.4481 37 1 1.0511 -0.5661 4.4683 38 1 3.2066 -1.2083 5.1046 39 1 3.5712 -0.0483 3.8011 40 1 4.0848 -2.8784 3.7236 41 1 3.8878 -0.6642 0.2358 42 1 3.8301 0.1944 1.7955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726790817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:28 Heat of formation + Delta-G solvation = -74.759043 kcal Electronic energy + Delta-G solvation = -23779.780055 eV Core-core repulsion = 20373.445139 eV Total energy + Delta-G solvation = -3406.334916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62550 -40.49659 -38.41491 -36.66018 -36.29196 -34.73076 -32.83709 -32.17568 -30.28102 -27.81136 -27.52109 -26.60976 -25.16972 -23.37081 -21.54476 -20.97256 -19.93376 -19.14173 -18.38669 -18.06173 -17.73816 -17.37409 -16.63073 -16.35568 -16.04801 -15.58569 -15.17360 -14.86636 -14.78576 -14.64623 -14.40021 -14.05931 -13.98089 -13.69749 -13.43129 -13.33942 -13.22724 -12.89379 -12.70867 -12.62294 -12.40351 -12.21606 -12.05191 -12.00156 -11.75343 -11.63562 -11.02048 -10.84581 -10.47610 -10.05801 -9.35313 -9.24990 -8.35362 -6.39311 1.28490 1.35186 1.41733 1.51899 1.84112 2.24256 2.29307 2.42162 2.93494 2.99372 3.56598 3.68433 3.87261 4.00390 4.03394 4.10488 4.17531 4.34885 4.40603 4.51718 4.58474 4.65466 4.69501 4.73068 4.77958 4.83281 4.93638 4.96504 4.99506 5.08073 5.30611 5.39989 5.45776 5.63188 5.79213 5.95006 6.13447 6.24811 6.31506 6.61496 6.75425 7.21878 7.31110 7.51394 8.81891 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.004926 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.075475 B = 5682.473962 C = 6357.852446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.101 0.899 4 C 0.489 3.511 5 O -0.572 6.572 6 N -0.610 5.610 7 C 0.068 3.932 8 C 0.226 3.774 9 C -0.531 4.531 10 H 0.028 0.972 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.946 3.054 14 H -0.284 1.284 15 H -0.270 1.270 16 H -0.236 1.236 17 N -0.545 5.545 18 C 0.044 3.956 19 C -0.138 4.138 20 C 0.102 3.898 21 N -0.716 5.716 22 C 0.523 3.477 23 O -0.604 6.604 24 C 0.054 3.946 25 H 0.045 0.955 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.008 0.992 33 H 0.268 0.732 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.402 0.598 41 H 0.063 0.937 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 16.633 23.942 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 H 0.118 0.882 4 C 0.277 3.723 5 O -0.450 6.450 6 N -0.343 5.343 7 C -0.073 4.073 8 C 0.103 3.897 9 C -0.570 4.570 10 H 0.047 0.953 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.768 3.232 14 H -0.210 1.210 15 H -0.195 1.195 16 H -0.159 1.159 17 N -0.273 5.273 18 C -0.082 4.082 19 C -0.177 4.177 20 C -0.020 4.020 21 N -0.368 5.368 22 C 0.309 3.691 23 O -0.484 6.484 24 C -0.077 4.077 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.238 0.762 41 H 0.082 0.918 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.289 15.226 23.396 27.944 hybrid contribution 0.830 -0.646 -0.934 1.407 sum 2.119 14.580 22.462 26.863 Atomic orbital electron populations 1.22008 0.90371 1.03187 1.04477 1.21538 0.98189 0.96180 0.86470 0.88157 1.21400 0.78708 0.86584 0.85618 1.90754 1.47860 1.20086 1.86306 1.47962 1.58519 1.19641 1.08153 1.22172 0.99133 0.81922 1.04086 1.19272 0.93082 0.93122 0.84215 1.21559 0.96822 1.29041 1.09587 0.95315 1.25837 1.01854 0.94100 0.96936 1.70049 1.35996 1.31947 1.20632 0.85752 0.79321 0.80264 0.77814 1.20997 1.19534 1.15908 1.60223 1.04914 1.59027 1.03106 1.22020 1.01504 0.97000 0.87638 1.21931 0.97095 1.01001 0.97631 1.22199 0.91884 0.90571 0.97386 1.46063 1.60235 1.23327 1.07198 1.20826 0.76813 0.88509 0.82974 1.90741 1.46205 1.44372 1.67057 1.22190 0.89379 0.95455 1.00647 0.93594 0.86700 0.90745 0.90190 0.91622 0.88471 0.93005 0.97395 0.92315 0.91659 0.88441 0.93001 0.85973 0.85952 0.89316 0.76192 0.91802 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.05 71.98 0.58 -2.62 16 2 C 0.09 2.36 1.67 44.17 0.07 2.43 16 3 H 0.10 1.92 7.55 -2.39 -0.02 1.90 16 4 C 0.49 20.76 5.79 87.66 0.51 21.27 16 5 O -0.57 -31.96 15.02 -3.01 -0.05 -32.00 16 6 N -0.61 -25.48 2.86 -851.13 -2.43 -27.91 16 7 C 0.07 1.90 9.84 127.77 1.26 3.16 16 8 C 0.23 11.61 4.20 85.64 0.36 11.97 16 9 C -0.53 -32.79 9.94 25.60 0.25 -32.53 16 10 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 11 C 0.01 0.65 5.47 84.65 0.46 1.11 16 12 N -0.95 -62.21 13.96 21.45 0.30 -61.91 16 13 Si 0.95 47.06 27.47 68.60 1.88 48.94 16 14 H -0.28 -14.58 7.11 99.48 0.71 -13.87 16 15 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 17 N -0.54 -14.39 3.95 -884.31 -3.49 -17.88 16 18 C 0.04 0.62 4.71 86.09 0.41 1.03 16 19 C -0.14 -1.53 5.86 30.20 0.18 -1.35 16 20 C 0.10 1.01 6.50 86.27 0.56 1.57 16 21 N -0.72 -15.14 5.33 -461.98 -2.46 -17.60 16 22 C 0.52 17.39 7.46 88.06 0.66 18.05 16 23 O -0.60 -28.40 17.92 -3.04 -0.05 -28.46 16 24 C 0.05 1.55 4.67 85.78 0.40 1.95 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.11 1.42 6.52 -2.38 -0.02 1.40 16 27 H 0.07 1.70 5.83 -2.39 -0.01 1.69 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 30 H 0.10 2.06 4.45 -2.38 -0.01 2.05 16 31 H 0.05 2.41 7.13 -2.38 -0.02 2.40 16 32 H 0.01 0.45 6.92 -2.39 -0.02 0.44 16 33 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 34 H 0.07 0.53 7.78 -2.38 -0.02 0.52 16 35 H 0.10 1.16 5.52 -2.39 -0.01 1.15 16 36 H 0.05 0.93 8.05 -2.39 -0.02 0.91 16 37 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 0.63 6.77 -2.39 -0.02 0.61 16 40 H 0.40 7.85 8.92 -92.71 -0.83 7.03 16 41 H 0.06 2.39 6.13 -2.39 -0.01 2.37 16 42 H 0.10 1.85 6.68 -2.39 -0.02 1.84 16 Total: -1.00 -98.52 326.67 -0.45 -98.97 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.16 Total: 11.82 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 5.70 Total: 26.02 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -8.09 Total: -125.30 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -0.10 Total: -60.46 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.88 Total: 48.94 kcal Total: -98.52 -0.45 -98.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726790817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.213 kcal (2) G-P(sol) polarization free energy of solvation -98.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds