Wall clock time and date at job start Tue Mar 31 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99946 * 2 1 4 4 O 1.21288 * 119.99982 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00280 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.50458 * 299.91687 * 5 3 2 7 7 C 1.53119 * 109.50490 * 59.99988 * 5 3 2 8 8 C 1.53114 * 109.16067 * 177.63594 * 7 5 3 9 9 C 1.53031 * 109.27959 * 302.34003 * 8 7 5 10 10 N 1.46851 * 109.52117 * 59.18263 * 9 8 7 11 11 C 1.46902 * 111.00079 * 174.15596 * 10 9 8 12 12 C 1.50706 * 109.46577 * 66.04774 * 11 10 9 13 13 O 1.21279 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99762 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47313 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99980 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99622 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47485 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46969 * 120.00453 * 20 18 16 23 23 H 1.48500 * 109.46928 * 240.00070 * 20 18 16 24 24 C 1.46842 * 111.19739 * 298.25887 * 10 9 8 25 25 H 1.08994 * 109.47492 * 300.00118 * 1 2 3 26 26 H 1.08996 * 109.47233 * 60.00876 * 1 2 3 27 27 H 1.09006 * 109.46655 * 180.02562 * 1 2 3 28 28 H 0.97006 * 120.00597 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.52142 * 57.72562 * 7 5 3 30 30 H 1.09000 * 109.51624 * 297.54042 * 7 5 3 31 31 H 1.09004 * 109.50266 * 182.40229 * 8 7 5 32 32 H 1.08998 * 109.50552 * 62.28847 * 8 7 5 33 33 H 1.08995 * 109.46834 * 299.16593 * 9 8 7 34 34 H 1.09000 * 109.46336 * 179.19764 * 9 8 7 35 35 H 1.09000 * 109.46894 * 306.05007 * 11 10 9 36 36 H 1.09000 * 109.47263 * 186.04573 * 11 10 9 37 37 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 39 39 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 40 40 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.46063 * 181.75733 * 24 10 9 42 42 H 1.09005 * 109.46173 * 301.72415 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 1 4.0095 0.6551 0.8914 7 6 4.1576 0.4454 -1.2490 8 6 5.6876 0.5015 -1.2706 9 6 6.1401 1.9630 -1.2385 10 7 5.6258 2.6093 -0.0242 11 6 6.1545 3.9733 0.1104 12 6 5.6195 4.8318 -1.0068 13 8 4.8719 4.3543 -1.8338 14 7 5.9719 6.1302 -1.0867 15 6 5.4523 6.9647 -2.1729 16 6 5.9945 8.3640 -2.0348 17 1 6.6599 8.6073 -1.2198 18 6 5.6410 9.3336 -2.9492 19 7 4.8303 9.0375 -3.9415 20 14 6.3126 11.0683 -2.7775 21 1 7.1960 11.1415 -1.5862 22 1 7.0905 11.4203 -3.9925 23 1 5.1854 12.0218 -2.6179 24 6 4.1576 2.6096 -0.0040 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.9501 -0.8400 0.0004 29 1 3.7625 0.9341 -2.1395 30 1 3.8315 -0.5945 -1.2280 31 1 6.0563 0.0263 -2.1797 32 1 6.0833 -0.0213 -0.3999 33 1 5.7555 2.4818 -2.1166 34 1 7.2292 2.0062 -1.2394 35 1 7.2430 3.9477 0.0596 36 1 5.8451 4.3900 1.0689 37 1 6.5701 6.5121 -0.4255 38 1 5.7625 6.5482 -3.1313 39 1 4.3637 6.9899 -2.1229 40 1 4.5820 9.7195 -4.5849 41 1 3.8068 3.1223 0.8917 42 1 3.7822 3.1253 -0.8880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732207302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:14 Heat of formation + Delta-G solvation = -77.133389 kcal Electronic energy + Delta-G solvation = -22826.184977 eV Core-core repulsion = 19419.747101 eV Total energy + Delta-G solvation = -3406.437875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39543 -39.27508 -37.33407 -34.72399 -34.23362 -33.35084 -32.32411 -31.04344 -28.35855 -27.08564 -26.26287 -23.68987 -23.21755 -22.15434 -20.69816 -19.80767 -19.58314 -17.46548 -17.08049 -16.16658 -15.74350 -15.61457 -15.28720 -14.99174 -14.81837 -14.52637 -14.29505 -14.09883 -13.63035 -13.41504 -13.01737 -12.68613 -12.51819 -12.46280 -12.21362 -11.97954 -11.88813 -11.51983 -11.11452 -10.95662 -10.91647 -10.75128 -10.53542 -10.40169 -10.29295 -9.73554 -9.69291 -9.36664 -9.25209 -8.72297 -7.87396 -7.76213 -6.15540 -4.22534 2.63732 3.08007 3.24209 3.31198 3.32553 3.34395 4.07117 4.14399 4.39507 4.59345 4.73751 4.86889 4.97205 5.18114 5.20600 5.24490 5.32587 5.40167 5.53055 5.54894 5.57187 5.61955 5.68778 5.72509 5.87428 6.00695 6.04985 6.12544 6.24999 6.37861 6.56434 7.07932 7.18839 7.32226 7.35218 7.46739 7.53125 7.67508 7.98237 8.18998 8.62595 8.78440 9.10213 9.44107 10.94629 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.003509 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.342173 B = 7977.023313 C = 8670.120713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.740 5.740 3 C 0.516 3.484 4 O -0.529 6.529 5 C -0.099 4.099 6 H 0.099 0.901 7 C -0.110 4.110 8 C -0.109 4.109 9 C 0.036 3.964 10 N -0.515 5.515 11 C 0.033 3.967 12 C 0.465 3.535 13 O -0.552 6.552 14 N -0.710 5.710 15 C 0.249 3.751 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.051 3.949 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.400 0.600 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.390 0.610 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.071 0.929 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -20.863 9.398 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.393 5.393 3 C 0.302 3.698 4 O -0.404 6.404 5 C -0.120 4.120 6 H 0.117 0.883 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.092 4.092 10 N -0.238 5.238 11 C -0.099 4.099 12 C 0.249 3.751 13 O -0.432 6.432 14 N -0.358 5.358 15 C 0.128 3.872 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.077 4.077 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.233 0.767 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.223 0.777 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.266 -20.596 9.033 22.525 hybrid contribution 0.470 1.250 -0.339 1.378 sum -0.796 -19.346 8.694 21.225 Atomic orbital electron populations 1.21509 0.79897 1.01884 1.02405 1.45823 1.07577 1.08786 1.77072 1.20764 0.90235 0.83452 0.75322 1.90752 1.70432 1.31236 1.48000 1.21277 0.90440 0.99640 1.00670 0.88305 1.21550 0.96761 0.99332 0.97129 1.21514 0.94641 0.96610 1.01954 1.22295 0.99363 0.94396 0.93129 1.62363 1.08637 1.15135 1.37678 1.22263 1.01190 0.88282 0.98120 1.21794 0.82224 0.83678 0.87425 1.90559 1.37163 1.72778 1.42732 1.46599 1.48283 1.09873 1.31064 1.19092 0.94995 0.88402 0.84759 1.21269 1.30101 0.94272 1.12451 0.91860 1.24968 0.94869 0.99363 0.94893 1.69991 1.33787 1.34273 1.14225 0.86358 0.78760 0.83685 0.78096 1.19615 1.20819 1.20785 1.22194 0.86937 0.93949 1.04634 0.92342 0.92242 0.90892 0.76654 0.91217 0.91847 0.91321 0.91343 0.91567 0.91272 0.88180 0.88151 0.77697 0.95688 0.95592 0.92522 0.91013 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.70 59.85 0.64 1.37 16 2 N -0.74 -6.91 5.62 -67.08 -0.38 -7.29 16 3 C 0.52 6.99 7.16 -10.99 -0.08 6.92 16 4 O -0.53 -9.83 15.99 5.55 0.09 -9.74 16 5 C -0.10 -1.20 2.69 -91.69 -0.25 -1.44 16 6 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 7 C -0.11 -1.17 5.16 -26.61 -0.14 -1.30 16 8 C -0.11 -1.13 6.09 -26.66 -0.16 -1.30 16 9 C 0.04 0.49 5.09 -3.83 -0.02 0.47 16 10 N -0.52 -7.29 4.86 -236.11 -1.15 -8.43 16 11 C 0.03 0.48 5.86 -4.97 -0.03 0.45 16 12 C 0.46 9.18 7.25 -10.98 -0.08 9.10 16 13 O -0.55 -12.94 11.62 5.56 0.06 -12.87 16 14 N -0.71 -15.02 5.55 -61.47 -0.34 -15.37 16 15 C 0.25 6.70 5.43 -5.20 -0.03 6.68 16 16 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 17 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 C 0.05 0.80 3.55 -3.84 -0.01 0.78 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.40 2.40 8.30 -40.82 -0.34 2.06 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.48 7.64 -51.93 -0.40 0.08 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.14 6.00 -51.93 -0.31 0.83 16 34 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.10 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 42 H 0.09 1.85 5.30 -51.93 -0.28 1.58 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -35.29 338.60 -8.15 -43.44 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.68 Total: 6.72 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.57 Total: 8.13 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -1.13 Total: -56.90 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.15 Total: -22.61 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.29 -8.15 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732207302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.697 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds