Wall clock time and date at job start Tue Mar 31 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99946 * 2 1 4 4 O 1.21288 * 119.99982 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00280 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.50458 * 299.91687 * 5 3 2 7 7 C 1.53119 * 109.50490 * 59.99988 * 5 3 2 8 8 C 1.53114 * 109.16067 * 177.63594 * 7 5 3 9 9 C 1.53031 * 109.27959 * 302.34003 * 8 7 5 10 10 N 1.46851 * 109.52117 * 59.18263 * 9 8 7 11 11 C 1.46902 * 111.00079 * 174.15596 * 10 9 8 12 12 C 1.50706 * 109.46577 * 66.04774 * 11 10 9 13 13 O 1.21279 * 120.00072 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99762 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47313 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99980 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99622 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47485 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46969 * 120.00453 * 20 18 16 23 23 H 1.48500 * 109.46928 * 240.00070 * 20 18 16 24 24 C 1.46842 * 111.19739 * 298.25887 * 10 9 8 25 25 H 1.08994 * 109.47492 * 300.00118 * 1 2 3 26 26 H 1.08996 * 109.47233 * 60.00876 * 1 2 3 27 27 H 1.09006 * 109.46655 * 180.02562 * 1 2 3 28 28 H 0.97006 * 120.00597 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.52142 * 57.72562 * 7 5 3 30 30 H 1.09000 * 109.51624 * 297.54042 * 7 5 3 31 31 H 1.09004 * 109.50266 * 182.40229 * 8 7 5 32 32 H 1.08998 * 109.50552 * 62.28847 * 8 7 5 33 33 H 1.08995 * 109.46834 * 299.16593 * 9 8 7 34 34 H 1.09000 * 109.46336 * 179.19764 * 9 8 7 35 35 H 1.09000 * 109.46894 * 306.05007 * 11 10 9 36 36 H 1.09000 * 109.47263 * 186.04573 * 11 10 9 37 37 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 39 39 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 40 40 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.46063 * 181.75733 * 24 10 9 42 42 H 1.09005 * 109.46173 * 301.72415 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 1 4.0095 0.6551 0.8914 7 6 4.1576 0.4454 -1.2490 8 6 5.6876 0.5015 -1.2706 9 6 6.1401 1.9630 -1.2385 10 7 5.6258 2.6093 -0.0242 11 6 6.1545 3.9733 0.1104 12 6 5.6195 4.8318 -1.0068 13 8 4.8719 4.3543 -1.8338 14 7 5.9719 6.1302 -1.0867 15 6 5.4523 6.9647 -2.1729 16 6 5.9945 8.3640 -2.0348 17 1 6.6599 8.6073 -1.2198 18 6 5.6410 9.3336 -2.9492 19 7 4.8303 9.0375 -3.9415 20 14 6.3126 11.0683 -2.7775 21 1 7.1960 11.1415 -1.5862 22 1 7.0905 11.4203 -3.9925 23 1 5.1854 12.0218 -2.6179 24 6 4.1576 2.6096 -0.0040 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.9501 -0.8400 0.0004 29 1 3.7625 0.9341 -2.1395 30 1 3.8315 -0.5945 -1.2280 31 1 6.0563 0.0263 -2.1797 32 1 6.0833 -0.0213 -0.3999 33 1 5.7555 2.4818 -2.1166 34 1 7.2292 2.0062 -1.2394 35 1 7.2430 3.9477 0.0596 36 1 5.8451 4.3900 1.0689 37 1 6.5701 6.5121 -0.4255 38 1 5.7625 6.5482 -3.1313 39 1 4.3637 6.9899 -2.1229 40 1 4.5820 9.7195 -4.5849 41 1 3.8068 3.1223 0.8917 42 1 3.7822 3.1253 -0.8880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732207302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:13 Heat of formation + Delta-G solvation = -107.768681 kcal Electronic energy + Delta-G solvation = -22827.513423 eV Core-core repulsion = 19419.747101 eV Total energy + Delta-G solvation = -3407.766321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60583 -40.64248 -38.63609 -36.16982 -35.70727 -34.52859 -34.33836 -32.07392 -30.08703 -28.22841 -27.63263 -25.05173 -24.48626 -23.70930 -21.80809 -21.37672 -20.73580 -18.99108 -18.38537 -17.60514 -17.24971 -17.02870 -16.60172 -16.35151 -16.26725 -15.82441 -15.57757 -15.34632 -15.05988 -14.55633 -14.26216 -14.13481 -14.00767 -13.68667 -13.51568 -13.35131 -13.13315 -12.89665 -12.79951 -12.59971 -12.26893 -12.21655 -11.78865 -11.65461 -11.49137 -11.37563 -11.31133 -10.84044 -10.80227 -10.16015 -9.82239 -9.17585 -8.32354 -6.49896 1.40261 1.42025 1.55691 1.58571 1.72128 2.19677 2.30646 2.61584 2.96255 3.02149 3.62567 3.79077 3.89625 4.06932 4.16785 4.23174 4.36617 4.46266 4.54108 4.55773 4.58035 4.60150 4.80888 4.92335 4.92769 4.96920 5.05315 5.08197 5.15501 5.17672 5.19725 5.41725 5.43858 5.49728 5.69441 5.81374 5.90275 6.00792 6.53478 6.62177 6.88600 7.20191 7.25703 7.49241 8.80006 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.003509 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.342173 B = 7977.023313 C = 8670.120713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.510 3.490 4 O -0.593 6.593 5 C -0.090 4.090 6 H 0.134 0.866 7 C -0.106 4.106 8 C -0.102 4.102 9 C 0.030 3.970 10 N -0.496 5.496 11 C 0.042 3.958 12 C 0.458 3.542 13 O -0.592 6.592 14 N -0.707 5.707 15 C 0.268 3.732 16 C -0.555 4.555 17 H 0.085 0.915 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.988 3.012 21 H -0.251 1.251 22 H -0.277 1.277 23 H -0.280 1.280 24 C 0.054 3.946 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.118 0.882 28 H 0.421 0.579 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.020 0.980 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.409 0.591 38 H -0.016 1.016 39 H -0.022 1.022 40 H 0.268 0.732 41 H 0.059 0.941 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -22.762 11.681 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.371 5.371 3 C 0.297 3.703 4 O -0.473 6.473 5 C -0.112 4.112 6 H 0.152 0.848 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.097 4.097 10 N -0.218 5.218 11 C -0.089 4.089 12 C 0.245 3.755 13 O -0.475 6.475 14 N -0.358 5.358 15 C 0.145 3.855 16 C -0.593 4.593 17 H 0.103 0.897 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.811 3.189 21 H -0.174 1.174 22 H -0.203 1.203 23 H -0.205 1.205 24 C -0.075 4.075 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.258 0.742 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.038 0.962 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.142 0.858 37 H 0.245 0.755 38 H 0.002 0.998 39 H -0.004 1.004 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.886 -22.588 11.359 25.299 hybrid contribution -0.262 1.731 -1.081 2.057 sum 0.624 -20.858 10.278 23.261 Atomic orbital electron populations 1.21664 0.79107 1.04348 1.01015 1.45679 1.08174 1.08455 1.74803 1.21124 0.91009 0.83629 0.74567 1.90731 1.71622 1.33698 1.51284 1.21253 0.89450 0.97529 1.02924 0.84816 1.21577 0.97181 1.01028 0.94645 1.21528 0.94061 0.94308 1.04069 1.22411 1.00305 0.96184 0.90842 1.62504 1.07376 1.14451 1.37477 1.22491 1.02993 0.87192 0.96261 1.23019 0.81088 0.83291 0.88149 1.90585 1.38725 1.73440 1.44701 1.46358 1.48940 1.10208 1.30276 1.18466 0.92249 0.89763 0.85063 1.21665 1.30273 0.94213 1.13123 0.89653 1.26142 0.94867 1.04693 0.94198 1.70163 1.35428 1.36173 1.15425 0.85066 0.78160 0.76871 0.78843 1.17395 1.20281 1.20544 1.22009 0.87898 0.96172 1.01419 0.93328 0.94184 0.86397 0.74164 0.94818 0.87576 0.89751 0.88470 0.96202 0.89364 0.84539 0.85756 0.75541 0.99788 1.00422 0.92280 0.92217 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.70 127.77 1.37 2.65 16 2 N -0.72 -12.18 5.62 -484.53 -2.72 -14.90 16 3 C 0.51 13.85 7.16 87.66 0.63 14.48 16 4 O -0.59 -23.47 15.99 -3.05 -0.05 -23.52 16 5 C -0.09 -2.08 2.69 -11.49 -0.03 -2.11 16 6 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 7 C -0.11 -2.07 5.16 30.67 0.16 -1.91 16 8 C -0.10 -1.82 6.09 30.64 0.19 -1.64 16 9 C 0.03 0.79 5.09 86.32 0.44 1.23 16 10 N -0.50 -13.43 4.86 -900.92 -4.38 -17.80 16 11 C 0.04 1.16 5.86 85.56 0.50 1.66 16 12 C 0.46 18.83 7.25 87.66 0.64 19.47 16 13 O -0.59 -30.10 11.62 -3.03 -0.04 -30.13 16 14 N -0.71 -30.98 5.55 -466.79 -2.59 -33.57 16 15 C 0.27 15.39 5.43 85.63 0.46 15.86 16 16 C -0.55 -31.20 9.28 25.60 0.24 -30.96 16 17 H 0.09 4.32 7.60 -2.91 -0.02 4.29 16 18 C 0.00 0.02 5.46 84.66 0.46 0.48 16 19 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 20 Si 0.99 43.46 29.54 68.60 2.03 45.48 16 21 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.05 1.73 3.55 86.33 0.31 2.04 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.42 3.52 8.30 -92.70 -0.77 2.75 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 1.17 7.64 -2.39 -0.02 1.15 16 31 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.02 0.71 6.00 -2.39 -0.01 0.70 16 34 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 35 H 0.14 2.83 8.06 -2.39 -0.02 2.81 16 36 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.41 14.59 8.32 -92.71 -0.77 13.82 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H -0.02 -1.46 8.14 -2.38 -0.02 -1.48 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.06 2.02 8.10 -2.38 -0.02 2.00 16 42 H 0.04 1.65 5.30 -2.38 -0.01 1.64 16 Total: -1.00 -86.40 338.60 -2.61 -89.01 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.51 Total: 22.18 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 5.36 Total: 21.24 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -9.40 Total: -124.26 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.08 Total: -53.65 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -86.40 -2.61 -89.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732207302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -86.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds