Wall clock time and date at job start Tue Mar 31 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00267 * 2 1 4 4 N 1.46498 * 109.46961 * 124.99976 * 3 2 1 5 5 C 1.47054 * 125.41334 * 90.00198 * 4 3 2 6 6 C 1.54096 * 103.86398 * 180.02562 * 5 4 3 7 7 N 1.47053 * 103.99585 * 359.92655 * 6 5 4 8 8 C 1.46492 * 125.41781 * 180.02562 * 7 6 5 9 9 N 1.46506 * 109.47259 * 84.81047 * 8 7 6 10 10 C 1.36939 * 119.99628 * 274.95918 * 9 8 7 11 11 H 1.07998 * 120.00580 * 324.10606 * 10 9 8 12 12 C 1.38813 * 119.99760 * 144.11774 * 10 9 8 13 13 N 1.31622 * 120.00107 * 158.49533 * 12 10 9 14 14 Si 1.86800 * 119.99915 * 338.49642 * 12 10 9 15 15 H 1.48496 * 109.47345 * 95.37002 * 14 12 10 16 16 H 1.48507 * 109.46916 * 215.36886 * 14 12 10 17 17 H 1.48504 * 109.47307 * 335.36497 * 14 12 10 18 18 C 1.46497 * 119.99962 * 94.95624 * 9 8 7 19 19 C 1.52999 * 109.46949 * 84.03808 * 18 9 8 20 20 O 1.42891 * 109.47211 * 63.80977 * 19 18 9 21 21 C 1.42901 * 114.00078 * 179.97438 * 20 19 18 22 22 C 1.33952 * 125.40801 * 269.99957 * 4 3 2 23 23 O 1.21581 * 123.04615 * 359.97438 * 22 4 3 24 24 H 1.07997 * 119.99449 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00084 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99161 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46955 * 4.99958 * 3 2 1 28 28 H 1.08999 * 109.46865 * 244.99760 * 3 2 1 29 29 H 1.09001 * 110.54949 * 61.39978 * 5 4 3 30 30 H 1.08998 * 110.66816 * 298.65387 * 5 4 3 31 31 H 1.09003 * 110.54959 * 118.59420 * 6 5 4 32 32 H 1.09001 * 110.54707 * 241.25618 * 6 5 4 33 33 H 1.08992 * 109.47712 * 204.81364 * 8 7 6 34 34 H 1.09006 * 109.46481 * 324.81686 * 8 7 6 35 35 H 0.97002 * 120.00021 * 179.97438 * 13 12 10 36 36 H 1.09003 * 109.47156 * 204.04037 * 18 9 8 37 37 H 1.09000 * 109.47256 * 324.03535 * 18 9 8 38 38 H 1.08998 * 109.46637 * 183.80785 * 19 18 9 39 39 H 1.08996 * 109.46938 * 303.80370 * 19 18 9 40 40 H 1.09005 * 109.47239 * 59.99975 * 21 20 19 41 41 H 1.09005 * 109.47553 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47651 * 299.99993 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3851 0.8564 1.1021 6 6 4.8935 1.1138 2.5339 7 7 3.7370 1.7087 3.2203 8 6 3.7095 2.1378 4.6207 9 7 4.2412 3.4989 4.7251 10 6 5.5918 3.7003 4.8276 11 1 6.2010 3.0040 5.3848 12 6 6.1781 4.7996 4.2154 13 7 7.3453 5.2412 4.6337 14 14 5.3103 5.6524 2.7979 15 1 4.5362 6.8091 3.3154 16 1 6.3173 6.1299 1.8164 17 1 4.3877 4.6960 2.1350 18 6 3.3281 4.6445 4.7196 19 6 2.7956 4.8788 6.1347 20 8 3.8777 5.2316 6.9985 21 6 3.4864 5.4739 8.3514 22 6 2.7121 1.7931 2.3570 23 8 1.6265 2.2486 2.6607 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9314 29 1 4.9692 1.4269 0.3799 30 1 4.4233 -0.2075 0.8684 31 1 5.1818 0.1774 3.0116 32 1 5.7318 1.8103 2.5228 33 1 2.6828 2.1198 4.9862 34 1 4.3203 1.4622 5.2197 35 1 7.7551 6.0092 4.2057 36 1 3.8613 5.5326 4.3803 37 1 2.4949 4.4418 4.0468 38 1 2.0650 5.6875 6.1186 39 1 2.3212 3.9679 6.4998 40 1 3.0261 4.5755 8.7629 41 1 4.3642 5.7352 8.9424 42 1 2.7703 6.2951 8.3811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840153784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:04 Heat of formation + Delta-G solvation = -16.350628 kcal Electronic energy + Delta-G solvation = -23755.368791 eV Core-core repulsion = 20351.566654 eV Total energy + Delta-G solvation = -3403.802137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81724 -39.05183 -37.52915 -37.25110 -36.15082 -34.01496 -33.26467 -30.79681 -29.86824 -27.93701 -27.16367 -26.68727 -24.60980 -23.74387 -22.57954 -21.02655 -20.49605 -18.82997 -18.07291 -17.67897 -17.58506 -17.08056 -16.87909 -16.43051 -15.93203 -15.73299 -15.52739 -15.32548 -14.95872 -14.65576 -14.63212 -14.41154 -14.25622 -13.64158 -13.25476 -13.14031 -13.08941 -12.91996 -12.58845 -12.51074 -12.33983 -12.21270 -12.11936 -11.76164 -11.54689 -11.20369 -10.71241 -10.42779 -10.39122 -10.01694 -9.24516 -9.02255 -8.14573 -5.51600 1.15927 1.24560 1.33611 1.45409 1.84589 2.23596 2.41665 3.01527 3.04934 3.08526 3.46624 3.71449 3.86030 4.03758 4.21280 4.22330 4.28481 4.32133 4.40542 4.49782 4.56345 4.59247 4.61851 4.66514 4.69590 4.75710 4.80883 4.87844 4.95098 5.00156 5.08468 5.27933 5.65471 5.71619 5.87263 5.97301 6.06446 6.21029 6.50730 6.74734 6.94597 7.61901 7.66773 8.03077 9.04677 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.005947 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.218594 B = 4707.339026 C = 5368.318805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C 0.173 3.827 4 N -0.638 5.638 5 C 0.100 3.900 6 C 0.089 3.911 7 N -0.637 5.637 8 C 0.387 3.613 9 N -0.594 5.594 10 C -0.225 4.225 11 H 0.058 0.942 12 C 0.000 4.000 13 N -0.939 5.939 14 Si 0.930 3.070 15 H -0.294 1.294 16 H -0.308 1.308 17 H -0.275 1.275 18 C 0.128 3.872 19 C 0.056 3.944 20 O -0.397 6.397 21 C 0.027 3.973 22 C 0.685 3.315 23 O -0.639 6.639 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.259 0.741 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 -10.762 -6.226 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C 0.051 3.949 4 N -0.376 5.376 5 C -0.023 4.023 6 C -0.035 4.035 7 N -0.378 5.378 8 C 0.180 3.820 9 N -0.316 5.316 10 C -0.355 4.355 11 H 0.075 0.925 12 C -0.197 4.197 13 N -0.583 5.583 14 Si 0.762 3.238 15 H -0.223 1.223 16 H -0.237 1.237 17 H -0.201 1.201 18 C 0.003 3.997 19 C -0.022 4.022 20 O -0.316 6.316 21 C -0.069 4.069 22 C 0.387 3.613 23 O -0.522 6.522 24 H 0.108 0.892 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.750 -10.361 -6.077 15.471 hybrid contribution -0.279 1.044 -0.526 1.202 sum -10.028 -9.317 -6.603 15.198 Atomic orbital electron populations 1.24020 0.95995 1.02469 0.98711 1.23340 0.96465 0.98699 1.01332 1.20389 0.91179 0.95860 0.87441 1.47431 1.14190 1.65940 1.10002 1.22545 0.80873 1.02193 0.96690 1.22456 0.89980 0.99407 0.91642 1.49217 1.12083 1.63928 1.12609 1.21006 0.98146 0.84286 0.78536 1.44879 1.02884 1.01766 1.82105 1.18499 0.82613 1.09618 1.24763 0.92455 1.25686 0.95664 0.98862 0.99466 1.69954 1.19956 1.26139 1.42292 0.86116 0.77169 0.78426 0.82079 1.22313 1.23716 1.20054 1.21307 0.93201 0.90775 0.94426 1.23049 0.88944 0.98632 0.91625 1.88174 1.33557 1.89845 1.20013 1.22838 1.01115 0.99842 0.83098 1.16501 0.84266 0.78459 0.82072 1.90775 1.25889 1.55026 1.80513 0.89238 0.86602 0.85763 0.92023 0.87069 0.89740 0.86903 0.88033 0.91878 0.90837 0.89212 0.93221 0.94557 0.92325 0.92778 0.92718 0.93348 0.89896 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 14.32 67.78 0.97 -2.53 16 2 C -0.18 -3.72 9.85 25.64 0.25 -3.47 16 3 C 0.17 4.22 6.43 85.63 0.55 4.77 16 4 N -0.64 -19.31 2.94 -842.44 -2.48 -21.78 16 5 C 0.10 2.32 7.68 86.64 0.67 2.99 16 6 C 0.09 2.64 7.67 86.64 0.66 3.30 16 7 N -0.64 -23.90 3.21 -849.70 -2.72 -26.62 16 8 C 0.39 15.28 6.60 170.96 1.13 16.40 16 9 N -0.59 -27.89 2.30 -713.75 -1.64 -29.53 16 10 C -0.23 -12.23 9.74 84.03 0.82 -11.41 16 11 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 12 C 0.00 0.00 5.30 84.86 0.45 0.45 16 13 N -0.94 -58.10 13.97 21.65 0.30 -57.79 16 14 Si 0.93 48.71 24.90 68.60 1.71 50.41 16 15 H -0.29 -15.53 6.67 99.48 0.66 -14.87 16 16 H -0.31 -16.12 7.11 99.48 0.71 -15.42 16 17 H -0.28 -14.48 7.11 99.48 0.71 -13.78 16 18 C 0.13 5.94 4.66 86.38 0.40 6.34 16 19 C 0.06 2.22 6.28 71.98 0.45 2.67 16 20 O -0.40 -17.44 10.41 -148.98 -1.55 -18.99 16 21 C 0.03 0.87 11.01 113.37 1.25 2.12 16 22 C 0.69 26.91 8.30 179.47 1.49 28.40 16 23 O -0.64 -29.52 16.97 -3.97 -0.07 -29.58 16 24 H 0.09 1.93 7.84 -2.91 -0.02 1.91 16 25 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 26 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 27 H 0.06 1.77 7.57 -2.39 -0.02 1.76 16 28 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.84 7.71 -2.39 -0.02 2.82 16 34 H 0.09 3.24 8.08 -2.38 -0.02 3.23 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.04 1.88 3.29 -2.39 -0.01 1.88 16 37 H 0.06 2.72 8.12 -2.39 -0.02 2.70 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -76.26 349.93 3.58 -72.67 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.94 Total: 11.17 kcal Atomic # 6 Polarization: 40.95 SS G_CDS: 9.09 Total: 50.05 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -6.54 Total: -135.73 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -1.62 Total: -48.57 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.71 Total: 50.41 kcal Total: -76.26 3.58 -72.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840153784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.324 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds