Wall clock time and date at job start Tue Mar 31 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.50701 * 109.46921 * 293.95400 * 3 2 1 5 5 O 1.21280 * 119.99781 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46835 * 180.02562 * 7 6 4 9 9 H 1.07995 * 120.00280 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99788 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99711 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00219 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.46794 * 90.00022 * 12 10 8 14 14 H 1.48505 * 109.46876 * 210.00288 * 12 10 8 15 15 H 1.48501 * 109.46982 * 330.00118 * 12 10 8 16 16 C 1.46906 * 111.00136 * 123.95472 * 2 1 3 17 17 H 1.08995 * 109.60116 * 186.36919 * 16 2 1 18 18 C 1.53341 * 109.60175 * 66.04416 * 16 2 1 19 19 C 1.53076 * 108.42057 * 172.71367 * 18 16 2 20 20 C 1.50174 * 109.89262 * 48.90229 * 19 18 16 21 21 O 1.21281 * 118.24342 * 162.43916 * 20 19 18 22 22 N 1.33352 * 123.50793 * 342.41545 * 20 19 18 23 23 C 1.46497 * 117.94707 * 182.22424 * 22 20 19 24 24 C 1.45752 * 124.10661 * 2.22235 * 22 20 19 25 25 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 26 26 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 28 28 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 29 29 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 30 30 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 32 32 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 33 33 H 0.97009 * 119.99937 * 179.97438 * 11 10 8 34 34 H 1.08995 * 109.67489 * 292.44224 * 18 16 2 35 35 H 1.09000 * 109.67407 * 52.94882 * 18 16 2 36 36 H 1.09005 * 109.39856 * 169.03036 * 19 18 16 37 37 H 1.08999 * 109.39945 * 288.76746 * 19 18 16 38 38 H 1.09006 * 109.47275 * 0.02562 * 23 22 20 39 39 H 1.08995 * 109.47161 * 119.99836 * 23 22 20 40 40 H 1.08999 * 109.47358 * 239.99850 * 23 22 20 41 41 H 1.08996 * 109.30090 * 220.61621 * 24 22 20 42 42 H 1.09001 * 109.29885 * 101.23972 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0046 1.4456 -2.1407 6 7 2.0181 3.3202 -1.5233 7 6 1.6690 3.9771 -2.7854 8 6 2.2092 5.3840 -2.7854 9 1 2.7580 5.7518 -1.9311 10 6 2.0028 6.2016 -3.8763 11 7 2.4738 7.4295 -3.8762 12 14 1.0530 5.5658 -5.3538 13 1 -0.3923 5.8563 -5.1754 14 1 1.5446 6.2363 -6.5842 15 1 1.2517 4.0992 -5.4762 16 6 1.9954 -0.7660 1.1376 17 1 3.0791 -0.6579 1.1810 18 6 1.6322 -2.2467 0.9730 19 6 2.3444 -3.0441 2.0685 20 6 2.1198 -2.3925 3.4028 21 8 2.3280 -3.0461 4.4030 22 7 1.7043 -1.1335 3.5466 23 6 1.5729 -0.6050 4.9066 24 6 1.3726 -0.2504 2.4356 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.0797 1.3444 0.1082 29 1 1.5611 1.9273 0.8309 30 1 2.5234 3.8013 -0.8496 31 1 2.1033 3.4215 -3.6165 32 1 0.5847 4.0039 -2.8933 33 1 2.3290 8.0047 -4.6438 34 1 0.5539 -2.3729 1.0694 35 1 1.9567 -2.5974 -0.0067 36 1 1.9504 -4.0602 2.0909 37 1 3.4130 -3.0761 1.8564 38 1 1.8545 -1.3754 5.6246 39 1 2.2273 0.2585 5.0256 40 1 0.5398 -0.3048 5.0816 41 1 1.7519 0.7498 2.6447 42 1 0.2894 -0.2052 2.3223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846923706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:10 Heat of formation + Delta-G solvation = -82.104598 kcal Electronic energy + Delta-G solvation = -22580.939801 eV Core-core repulsion = 19174.286358 eV Total energy + Delta-G solvation = -3406.653443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76394 -40.63896 -38.89202 -36.38428 -35.95152 -34.42471 -34.36272 -30.84548 -29.70276 -28.68055 -28.03901 -26.20490 -24.90713 -23.69029 -22.01154 -21.33395 -19.49342 -19.14592 -18.02699 -17.74148 -17.31109 -17.23524 -16.83764 -16.50096 -16.13255 -15.85718 -15.38190 -15.33526 -14.96809 -14.56901 -14.48956 -14.27544 -14.11515 -13.87087 -13.62794 -13.21139 -13.05917 -12.82430 -12.77522 -12.72731 -12.51398 -12.43582 -12.12501 -11.92004 -11.67435 -11.62852 -10.90274 -10.79531 -10.65443 -9.87002 -9.82676 -9.23144 -8.38708 -6.45303 1.33747 1.36637 1.48764 1.55754 1.81438 1.96570 2.28777 2.32603 2.97151 3.02629 3.51200 3.68118 3.69950 3.92284 4.06331 4.19527 4.30366 4.36015 4.42067 4.43822 4.47435 4.52433 4.61617 4.65895 4.83126 4.85506 4.88881 4.93715 5.07022 5.11081 5.13539 5.26090 5.29934 5.34303 5.59622 5.88265 6.03441 6.12640 6.38495 6.56743 6.92867 7.07978 7.18489 7.50797 8.75993 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.003026 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.673641 B = 9250.595545 C = 9657.342129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.042 3.958 4 C 0.499 3.501 5 O -0.578 6.578 6 N -0.709 5.709 7 C 0.234 3.766 8 C -0.545 4.545 9 H 0.060 0.940 10 C 0.025 3.975 11 N -0.933 5.933 12 Si 0.937 3.063 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.260 1.260 16 C 0.075 3.925 17 H 0.104 0.896 18 C -0.109 4.109 19 C -0.124 4.124 20 C 0.508 3.492 21 O -0.603 6.603 22 N -0.601 5.601 23 C 0.065 3.935 24 C 0.077 3.923 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.408 0.592 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.272 0.728 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -17.369 14.429 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.243 5.243 3 C -0.089 4.089 4 C 0.286 3.714 5 O -0.458 6.458 6 N -0.360 5.360 7 C 0.110 3.890 8 C -0.583 4.583 9 H 0.078 0.922 10 C -0.175 4.175 11 N -0.572 5.572 12 Si 0.761 3.239 13 H -0.190 1.190 14 H -0.201 1.201 15 H -0.184 1.184 16 C -0.034 4.034 17 H 0.122 0.878 18 C -0.147 4.147 19 C -0.164 4.164 20 C 0.299 3.701 21 O -0.486 6.486 22 N -0.332 5.332 23 C -0.078 4.078 24 C -0.047 4.047 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.244 0.756 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.102 -18.154 13.754 22.872 hybrid contribution -0.427 1.066 0.172 1.162 sum -2.530 -17.087 13.926 22.188 Atomic orbital electron populations 1.22613 0.86626 1.03049 1.01179 1.61851 1.09175 1.12232 1.41074 1.22053 1.03670 0.89678 0.93473 1.21250 0.78978 0.81241 0.89943 1.90618 1.41722 1.64999 1.48499 1.46022 1.56507 1.13349 1.20074 1.19030 0.94788 0.91456 0.83696 1.21324 1.36441 0.96447 1.04073 0.92191 1.25607 0.96001 0.94708 1.01183 1.69986 1.46771 1.08161 1.32250 0.85861 0.79509 0.79435 0.79097 1.19041 1.20078 1.18391 1.22099 1.00743 0.94347 0.86189 0.87838 1.21668 1.01026 0.92450 0.99510 1.21624 1.04569 1.00716 0.89465 1.20804 0.75433 0.81446 0.92443 1.90682 1.54389 1.62626 1.40904 1.47206 1.65266 1.12343 1.08412 1.21874 1.02724 1.00074 0.83128 1.22355 1.01634 0.94473 0.86238 0.92185 0.90009 0.93968 0.85418 0.89193 0.75624 0.97189 0.97189 0.91921 0.90937 0.88867 0.87147 0.86639 0.90875 0.90433 0.90873 0.88996 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.33 127.69 1.06 1.32 16 2 N -0.52 -10.17 4.45 -901.09 -4.01 -14.19 16 3 C 0.04 0.84 5.05 85.56 0.43 1.27 16 4 C 0.50 16.43 7.56 87.66 0.66 17.09 16 5 O -0.58 -23.87 14.31 -3.03 -0.04 -23.91 16 6 N -0.71 -25.90 5.55 -466.78 -2.59 -28.49 16 7 C 0.23 11.01 4.50 85.63 0.38 11.39 16 8 C -0.54 -29.18 9.83 25.60 0.25 -28.93 16 9 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 10 C 0.03 1.40 5.47 84.66 0.46 1.86 16 11 N -0.93 -54.90 13.96 21.45 0.30 -54.60 16 12 Si 0.94 43.27 27.47 68.60 1.88 45.16 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.26 -11.87 6.54 99.48 0.65 -11.22 16 16 C 0.08 1.02 2.26 45.00 0.10 1.12 16 17 H 0.10 1.27 7.91 -2.39 -0.02 1.25 16 18 C -0.11 -1.37 5.05 30.73 0.16 -1.21 16 19 C -0.12 -1.63 6.03 29.71 0.18 -1.46 16 20 C 0.51 9.98 7.47 87.71 0.66 10.64 16 21 O -0.60 -16.89 15.95 -3.03 -0.05 -16.94 16 22 N -0.60 -9.54 3.21 -851.64 -2.73 -12.27 16 23 C 0.06 0.91 10.47 127.77 1.34 2.25 16 24 C 0.08 0.95 5.07 86.49 0.44 1.39 16 25 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 26 H 0.08 1.41 6.48 -2.39 -0.02 1.40 16 27 H 0.04 0.69 6.25 -2.38 -0.01 0.67 16 28 H 0.13 1.99 7.93 -2.39 -0.02 1.97 16 29 H 0.09 1.36 7.31 -2.39 -0.02 1.34 16 30 H 0.41 12.73 8.32 -92.71 -0.77 11.96 16 31 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 32 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 33 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 34 H 0.07 0.92 6.86 -2.39 -0.02 0.90 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.35 6.59 -2.38 -0.02 1.33 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.90 7.33 -2.39 -0.02 0.89 16 42 H 0.08 0.95 5.85 -2.39 -0.01 0.94 16 Total: -1.00 -73.38 331.08 -0.92 -74.29 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.20 Total: 14.22 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.13 Total: 16.74 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -9.04 Total: -109.55 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.09 Total: -40.85 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -73.38 -0.92 -74.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846923706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.813 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds