Wall clock time and date at job start Tue Mar 31 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21280 * 119.99844 * 2 1 4 4 N 1.34775 * 120.00000 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99956 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47345 * 176.13877 * 5 4 2 7 7 H 1.08997 * 109.58410 * 47.93349 * 6 5 4 8 8 C 1.53187 * 109.58578 * 168.36340 * 6 5 4 9 9 C 1.53040 * 109.31007 * 174.42061 * 8 6 5 10 10 C 1.53034 * 109.54204 * 298.63402 * 9 8 6 11 11 C 1.52768 * 109.38302 * 61.24027 * 10 9 8 12 12 N 1.46925 * 109.58604 * 287.65432 * 6 5 4 13 13 C 1.34778 * 120.63337 * 6.57867 * 12 6 5 14 14 O 1.21588 * 119.99817 * 5.10047 * 13 12 6 15 15 N 1.34771 * 120.00396 * 184.82299 * 13 12 6 16 16 C 1.46503 * 120.00413 * 175.69655 * 15 13 12 17 17 C 1.50699 * 109.47419 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99601 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00268 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00270 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46868 * 59.99998 * 21 19 17 23 23 H 1.48503 * 109.47299 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47338 * 300.00160 * 21 19 17 25 25 H 1.09006 * 109.47176 * 239.99510 * 1 2 3 26 26 H 1.08995 * 109.47521 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47157 * 120.00216 * 1 2 3 28 28 H 0.96997 * 120.00599 * 0.02562 * 4 2 1 29 29 H 1.09009 * 109.46963 * 56.14104 * 5 4 2 30 30 H 1.09000 * 109.47550 * 296.14400 * 5 4 2 31 31 H 1.08993 * 109.49978 * 294.37443 * 8 6 5 32 32 H 1.09003 * 109.50034 * 54.44125 * 8 6 5 33 33 H 1.09005 * 109.45703 * 58.65969 * 9 8 6 34 34 H 1.09005 * 109.46070 * 178.62577 * 9 8 6 35 35 H 1.09000 * 109.49908 * 181.31436 * 10 9 8 36 36 H 1.08993 * 109.50202 * 301.38466 * 10 9 8 37 37 H 1.08990 * 109.51287 * 185.70637 * 11 10 9 38 38 H 1.08999 * 109.42914 * 65.41926 * 11 10 9 39 39 H 0.97003 * 119.99789 * 355.69786 * 15 13 12 40 40 H 1.09000 * 109.47270 * 300.00291 * 16 15 13 41 41 H 1.09008 * 109.46759 * 60.00029 * 16 15 13 42 42 H 0.97000 * 119.99974 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1560 -2.6063 0.0979 7 1 3.6288 -3.2307 -0.6235 8 6 5.6598 -2.6390 -0.1923 9 6 6.1899 -4.0552 0.0429 10 6 5.9718 -4.4470 1.5061 11 6 4.4762 -4.4324 1.8173 12 7 3.9249 -3.1195 1.4550 13 6 3.2254 -2.3972 2.3525 14 8 2.7000 -1.3536 2.0161 15 7 3.1035 -2.8345 3.6215 16 6 2.4243 -2.0052 4.6201 17 6 2.4227 -2.7178 5.9479 18 1 2.8814 -3.6914 6.0388 19 6 1.8358 -2.1270 7.0467 20 7 1.2768 -0.9417 6.9359 21 14 1.8333 -3.0107 8.6925 22 1 3.2326 -3.2588 9.1232 23 1 1.1449 -2.1700 9.7047 24 1 1.1198 -4.3061 8.5577 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5139 -0.8900 28 1 1.6960 -2.0073 0.0005 29 1 4.0095 -0.5940 0.8529 30 1 4.0089 -0.7150 -0.9230 31 1 5.8367 -2.3517 -1.2287 32 1 6.1735 -1.9429 0.4709 33 1 5.6585 -4.7539 -0.6033 34 1 7.2551 -4.0870 -0.1863 35 1 6.3706 -5.4467 1.6784 36 1 6.4829 -3.7348 2.1536 37 1 4.3240 -4.6116 2.8815 38 1 3.9778 -5.2101 1.2387 39 1 3.4655 -3.6984 3.8736 40 1 2.9469 -1.0538 4.7185 41 1 1.3968 -1.8243 4.3040 42 1 0.8642 -0.5259 7.7091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:23 Heat of formation + Delta-G solvation = -41.288810 kcal Electronic energy + Delta-G solvation = -23663.638921 eV Core-core repulsion = 20258.755383 eV Total energy + Delta-G solvation = -3404.883538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48520 -38.61761 -37.23555 -35.06646 -33.64542 -32.81659 -32.01039 -31.44465 -29.39322 -27.28508 -26.01971 -24.29183 -22.98824 -21.66053 -20.85509 -20.00023 -19.21005 -17.84401 -16.25488 -16.13308 -15.79268 -15.73489 -15.11387 -14.91164 -14.65959 -14.44251 -14.10386 -13.80437 -13.33998 -13.19723 -13.00378 -12.55999 -12.51429 -12.34252 -12.07611 -11.87839 -11.80969 -11.54425 -11.24184 -11.05701 -10.96531 -10.87046 -10.77555 -10.67205 -10.25915 -9.37835 -9.34280 -8.95321 -8.69105 -8.50086 -8.00352 -7.65983 -6.15030 -4.22088 3.09456 3.24863 3.28740 3.30262 3.31750 3.80648 3.92891 4.30119 4.49521 4.68399 4.79088 4.85586 5.01292 5.16805 5.17389 5.20766 5.35143 5.37648 5.53668 5.60415 5.62378 5.70850 5.75268 5.80667 5.90657 5.94609 5.94964 6.16618 6.20373 6.42975 6.78946 7.03793 7.13129 7.51708 7.54942 7.58153 7.85220 8.02540 8.09391 8.75983 8.87411 8.90746 9.34003 9.48753 10.94921 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.005626 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.875500 B = 4975.568036 C = 6695.196924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.520 3.480 3 O -0.566 6.566 4 N -0.685 5.685 5 C 0.137 3.863 6 C 0.156 3.844 7 H 0.068 0.932 8 C -0.129 4.129 9 C -0.115 4.115 10 C -0.137 4.137 11 C 0.114 3.886 12 N -0.638 5.638 13 C 0.685 3.315 14 O -0.572 6.572 15 N -0.730 5.730 16 C 0.270 3.730 17 C -0.543 4.543 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.391 0.609 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.383 0.617 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -9.262 -15.381 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.307 3.693 3 O -0.445 6.445 4 N -0.334 5.334 5 C 0.013 3.987 6 C 0.051 3.949 7 H 0.086 0.914 8 C -0.168 4.168 9 C -0.153 4.153 10 C -0.175 4.175 11 C -0.009 4.009 12 N -0.379 5.379 13 C 0.386 3.614 14 O -0.449 6.449 15 N -0.385 5.385 16 C 0.149 3.851 17 C -0.582 4.582 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.224 0.776 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.217 0.783 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.894 -7.547 -15.450 18.177 hybrid contribution -0.043 -1.442 1.295 1.939 sum 5.851 -8.989 -14.155 17.759 Atomic orbital electron populations 1.21847 0.92947 1.04698 1.03546 1.20331 0.89965 0.83517 0.75459 1.90638 1.70922 1.31658 1.51311 1.45558 1.06490 1.08037 1.73302 1.21316 0.81264 0.94715 1.01399 1.21195 0.95468 0.94991 0.83235 0.91376 1.21915 0.94977 0.97840 1.02099 1.21464 1.00927 0.96380 0.96481 1.21865 0.96519 1.02050 0.97115 1.21453 0.93491 0.84998 1.00994 1.47380 1.58422 1.19870 1.12201 1.16240 0.79895 0.84034 0.81220 1.91073 1.52292 1.24329 1.77253 1.45985 1.61432 1.23012 1.08046 1.18913 0.92166 0.90025 0.83977 1.21172 1.38730 1.04332 0.93917 0.92209 1.24934 0.94888 0.94912 0.99201 1.69972 1.36400 1.14792 1.30980 0.86496 0.78290 0.79419 0.82798 1.20119 1.21060 1.20124 0.89452 0.89697 0.90526 0.77616 0.89222 0.92993 0.90757 0.91026 0.91899 0.91740 0.90947 0.91296 0.90040 0.91949 0.78275 0.96004 0.95890 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.32 36.01 0.37 -2.00 16 2 C 0.52 9.46 7.13 -10.99 -0.08 9.39 16 3 O -0.57 -12.77 17.09 5.56 0.09 -12.67 16 4 N -0.68 -10.90 3.21 -60.29 -0.19 -11.09 16 5 C 0.14 2.11 4.31 -4.04 -0.02 2.09 16 6 C 0.16 1.87 2.91 -67.60 -0.20 1.67 16 7 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.13 -1.26 5.34 -26.61 -0.14 -1.41 16 9 C -0.11 -0.94 5.88 -26.69 -0.16 -1.10 16 10 C -0.14 -1.26 6.06 -26.83 -0.16 -1.42 16 11 C 0.11 1.26 6.40 -3.93 -0.03 1.23 16 12 N -0.64 -8.96 2.98 -171.18 -0.51 -9.47 16 13 C 0.68 13.16 8.01 -86.92 -0.70 12.47 16 14 O -0.57 -12.70 9.72 5.29 0.05 -12.64 16 15 N -0.73 -15.19 5.46 -66.41 -0.36 -15.55 16 16 C 0.27 7.14 5.43 -5.19 -0.03 7.12 16 17 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 18 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.88 -26.20 13.29 55.43 0.74 -25.46 16 21 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 27 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.39 5.47 8.36 -40.82 -0.34 5.13 16 29 H 0.09 1.78 6.43 -51.92 -0.33 1.45 16 30 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.95 5.56 -51.93 -0.29 0.66 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.38 6.98 5.78 -40.82 -0.24 6.75 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -34.30 335.09 -8.35 -42.65 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.65 Total: 8.66 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -1.55 Total: 14.71 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -0.33 Total: -61.57 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.15 Total: -25.32 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.30 -8.35 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.363 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds