Wall clock time and date at job start Tue Mar 31 2020 02:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47385 * 2 1 4 4 C 1.45757 * 117.94329 * 89.99659 * 3 2 1 5 5 C 1.52927 * 110.48164 * 160.92718 * 4 3 2 6 6 C 1.53343 * 108.67352 * 50.75510 * 5 4 3 7 7 C 1.53077 * 108.42279 * 292.46450 * 6 5 4 8 8 H 1.09004 * 109.39663 * 288.77536 * 7 6 5 9 9 N 1.46502 * 109.39615 * 169.03534 * 7 6 5 10 10 C 1.34781 * 119.99428 * 155.00666 * 9 7 6 11 11 O 1.21580 * 120.00116 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99607 * 180.02562 * 10 9 7 13 13 C 1.46496 * 119.99854 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47161 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99973 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99913 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00224 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.47269 * 89.99995 * 19 17 15 21 21 H 1.48498 * 109.47339 * 210.00005 * 19 17 15 22 22 H 1.48495 * 109.47012 * 330.00091 * 19 17 15 23 23 C 1.33350 * 117.94441 * 269.99920 * 3 2 1 24 24 O 1.21279 * 118.24909 * 2.19394 * 23 3 2 25 25 H 1.08997 * 109.47321 * 300.00115 * 1 2 3 26 26 H 1.09001 * 109.46851 * 60.00375 * 1 2 3 27 27 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46968 * 239.99475 * 2 1 3 29 29 H 1.09004 * 109.46470 * 119.99983 * 2 1 3 30 30 H 1.08995 * 109.30501 * 40.61565 * 4 3 2 31 31 H 1.09002 * 109.29865 * 281.23473 * 4 3 2 32 32 H 1.09003 * 109.59731 * 170.50772 * 5 4 3 33 33 H 1.09002 * 109.60306 * 290.99510 * 5 4 3 34 34 H 1.08996 * 109.67680 * 52.20007 * 6 5 4 35 35 H 1.09003 * 109.67073 * 172.70337 * 6 5 4 36 36 H 0.96994 * 120.00196 * 334.99594 * 9 7 6 37 37 H 0.97003 * 120.00240 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47179 * 299.99117 * 13 12 10 39 39 H 1.09004 * 109.47581 * 59.99607 * 13 12 10 40 40 H 1.08997 * 109.46947 * 299.99924 * 14 13 12 41 41 H 1.09000 * 109.47025 * 60.00111 * 14 13 12 42 42 H 0.97003 * 119.99937 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2460 2.0252 1.2876 5 6 3.1697 3.2332 1.1259 6 6 2.6262 4.1194 -0.0013 7 6 2.7705 3.3625 -1.3240 8 1 3.8240 3.3128 -1.5996 9 7 2.0280 4.0677 -2.3716 10 6 2.3833 3.9224 -3.6636 11 8 3.3204 3.2065 -3.9595 12 7 1.7005 4.5716 -4.6274 13 6 2.0871 4.4142 -6.0316 14 6 1.1577 5.2507 -6.9133 15 6 1.5557 5.0892 -8.3578 16 1 2.3881 4.4532 -8.6207 17 6 0.8573 5.7534 -9.3437 18 7 1.2050 5.6129 -10.6043 19 14 -0.5819 6.8539 -8.8889 20 1 -0.0925 8.2357 -8.6509 21 1 -1.5685 6.8626 -9.9988 22 1 -1.2287 6.3386 -7.6556 23 6 2.2268 1.9703 -1.1780 24 8 1.9635 1.3484 -2.1854 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.7037 1.3108 1.9719 31 1 1.2919 2.3538 1.6997 32 1 3.1963 3.8002 2.0564 33 1 4.1742 2.8941 0.8726 34 1 1.5750 4.3420 0.1813 35 1 3.1958 5.0478 -0.0452 36 1 1.2805 4.6390 -2.1355 37 1 0.9531 5.1431 -4.3912 38 1 3.1152 4.7506 -6.1653 39 1 2.0085 3.3645 -6.3147 40 1 0.1297 4.9140 -6.7795 41 1 1.2360 6.3004 -6.6304 42 1 0.7139 6.0805 -11.2979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921908061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:00 Heat of formation + Delta-G solvation = -69.141362 kcal Electronic energy + Delta-G solvation = -22581.916644 eV Core-core repulsion = 19175.825328 eV Total energy + Delta-G solvation = -3406.091315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96854 -39.23751 -36.68142 -35.86771 -34.67704 -33.25112 -32.62127 -30.44961 -30.01687 -28.70774 -25.19009 -24.47973 -23.43364 -22.28055 -20.78173 -20.56548 -19.00528 -17.87557 -17.21029 -16.88385 -16.77324 -16.24159 -15.40583 -14.92234 -14.43028 -14.31108 -14.24417 -14.03423 -13.94891 -13.70672 -13.52404 -13.16283 -12.77290 -12.54911 -12.39901 -12.13121 -11.82249 -11.66732 -11.41372 -11.35483 -11.17385 -11.15122 -10.34260 -10.17175 -10.06943 -9.91590 -9.66308 -9.25822 -8.93793 -8.91879 -8.57244 -8.30074 -6.05488 -4.04954 2.41390 2.72900 3.13568 3.28955 3.36409 3.38440 3.67554 4.25833 4.28273 4.33690 4.37265 4.42695 4.67733 4.83339 4.89750 4.94649 5.05545 5.10937 5.20666 5.27480 5.34549 5.37560 5.45901 5.52889 5.70367 5.75664 5.95673 6.16521 6.25601 6.34783 6.44933 6.67619 6.92257 7.08679 7.27432 7.32754 7.36700 7.74002 8.12995 8.37661 8.52786 8.99369 9.04057 9.54814 11.07729 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.003171 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.850630 B = 8826.522282 C = 9070.137533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.609 5.609 4 C 0.113 3.887 5 C -0.132 4.132 6 C -0.130 4.130 7 C 0.159 3.841 8 H 0.118 0.882 9 N -0.738 5.738 10 C 0.705 3.295 11 O -0.579 6.579 12 N -0.741 5.741 13 C 0.149 3.851 14 C -0.021 4.021 15 C -0.520 4.520 16 H 0.076 0.924 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.495 3.505 24 O -0.515 6.515 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.395 0.605 37 H 0.390 0.610 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -4.163 31.095 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.345 5.345 4 C -0.010 4.010 5 C -0.171 4.171 6 C -0.168 4.168 7 C 0.049 3.951 8 H 0.135 0.865 9 N -0.395 5.395 10 C 0.405 3.595 11 O -0.456 6.456 12 N -0.395 5.395 13 C 0.027 3.973 14 C -0.059 4.059 15 C -0.559 4.559 16 H 0.094 0.906 17 C -0.134 4.134 18 N -0.538 5.538 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C 0.280 3.720 24 O -0.388 6.388 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.229 0.771 37 H 0.222 0.778 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.290 -5.091 29.991 30.421 hybrid contribution -1.578 1.114 0.419 1.977 sum -1.288 -3.977 30.410 30.696 Atomic orbital electron populations 1.22077 0.95881 1.02172 1.02181 1.21467 0.94608 0.82679 1.03127 1.47492 1.66547 1.14706 1.05779 1.21401 0.99466 0.95155 0.84941 1.21851 0.99788 0.95892 0.99533 1.21960 1.02905 0.99384 0.92546 1.20521 0.98481 0.88231 0.87831 0.86451 1.44855 1.37590 1.52174 1.04852 1.15917 0.82844 0.80477 0.80228 1.90908 1.31039 1.42249 1.81372 1.45454 1.35720 1.50906 1.07438 1.21362 0.99247 1.00855 0.75864 1.19796 0.95267 0.94906 0.95949 1.20938 1.17137 1.29366 0.88418 0.90565 1.25000 0.97173 0.96349 0.94829 1.69913 1.40993 1.43238 0.99691 0.86740 0.82741 0.81168 0.78346 1.20272 1.21324 1.19108 1.20833 0.78624 0.89602 0.82901 1.90789 1.49226 1.63367 1.35453 0.92871 0.92103 0.91700 0.89612 0.90828 0.90646 0.91827 0.89121 0.90406 0.90561 0.89587 0.77061 0.77750 0.92201 0.92134 0.96057 0.96499 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.23 37.16 0.38 -1.03 16 2 C 0.10 0.94 5.92 -4.04 -0.02 0.92 16 3 N -0.61 -5.81 2.81 -174.96 -0.49 -6.31 16 4 C 0.11 0.60 6.39 -4.48 -0.03 0.58 16 5 C -0.13 -0.59 6.02 -26.59 -0.16 -0.75 16 6 C -0.13 -0.81 5.51 -26.51 -0.15 -0.96 16 7 C 0.16 1.83 2.70 -69.30 -0.19 1.64 16 8 H 0.12 1.54 7.58 -51.93 -0.39 1.15 16 9 N -0.74 -9.71 4.97 -60.02 -0.30 -10.01 16 10 C 0.71 13.04 7.99 -86.91 -0.69 12.34 16 11 O -0.58 -13.32 15.54 3.49 0.05 -13.26 16 12 N -0.74 -13.43 5.56 -65.22 -0.36 -13.79 16 13 C 0.15 3.30 5.61 -4.04 -0.02 3.27 16 14 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 15 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 16 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 19 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 23 C 0.50 6.68 7.19 -11.87 -0.09 6.59 16 24 O -0.52 -9.73 14.96 3.75 0.06 -9.67 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 1.00 7.20 -51.93 -0.37 0.63 16 29 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 30 H 0.08 0.28 7.92 -51.93 -0.41 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.39 8.12 -51.93 -0.42 -0.04 16 34 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 37 H 0.39 5.80 8.49 -40.82 -0.35 5.46 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 41 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -38.19 342.93 -8.15 -46.33 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.86 Total: 3.40 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.51 Total: 8.49 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.38 Total: -57.32 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.11 Total: -22.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -38.19 -8.15 -46.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921908061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.810 kcal (2) G-P(sol) polarization free energy of solvation -38.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds