Wall clock time and date at job start Tue Mar 31 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46720 * 2 1 4 4 C 1.45762 * 117.94254 * 90.00328 * 3 2 1 5 5 C 1.52917 * 110.48801 * 199.07212 * 4 3 2 6 6 C 1.53345 * 108.67350 * 309.24769 * 5 4 3 7 7 C 1.53073 * 108.42625 * 67.53233 * 6 5 4 8 8 H 1.08993 * 109.40073 * 71.14232 * 7 6 5 9 9 N 1.46498 * 109.39908 * 190.96860 * 7 6 5 10 10 C 1.34775 * 119.99689 * 204.99473 * 9 7 6 11 11 O 1.21583 * 120.00141 * 0.02562 * 10 9 7 12 12 N 1.34786 * 119.99796 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99733 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46992 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47525 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 14 20 20 H 1.48502 * 109.46964 * 270.27509 * 19 17 15 21 21 H 1.48505 * 109.47036 * 30.26897 * 19 17 15 22 22 H 1.48490 * 109.47395 * 150.27411 * 19 17 15 23 23 C 1.33343 * 117.95271 * 269.99974 * 3 2 1 24 24 O 1.21284 * 118.24677 * 357.78126 * 23 3 2 25 25 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47168 * 299.99623 * 1 2 3 27 27 H 1.09003 * 109.47380 * 59.99941 * 1 2 3 28 28 H 1.09003 * 109.47158 * 240.00686 * 2 1 3 29 29 H 1.08990 * 109.47224 * 120.00348 * 2 1 3 30 30 H 1.09007 * 109.30006 * 78.75977 * 4 3 2 31 31 H 1.08997 * 109.13337 * 319.27875 * 4 3 2 32 32 H 1.09001 * 109.60513 * 189.48966 * 5 4 3 33 33 H 1.09002 * 109.73727 * 69.08004 * 5 4 3 34 34 H 1.09000 * 109.67788 * 307.79617 * 6 5 4 35 35 H 1.09002 * 109.67228 * 187.26344 * 6 5 4 36 36 H 0.97001 * 120.00384 * 25.00432 * 9 7 6 37 37 H 0.97000 * 119.99687 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47421 * 60.00536 * 13 12 10 39 39 H 1.09001 * 109.47150 * 300.00145 * 13 12 10 40 40 H 1.09009 * 109.47378 * 60.00101 * 14 13 12 41 41 H 1.08998 * 109.47458 * 300.00562 * 14 13 12 42 42 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2459 2.0252 1.2877 5 6 2.2868 3.5453 1.1262 6 6 3.2665 3.8931 -0.0011 7 6 2.6786 3.3952 -1.3238 8 1 1.8272 4.0177 -1.5986 9 7 3.6994 3.4770 -2.3714 10 6 3.3318 3.5875 -3.6633 11 8 2.1530 3.6198 -3.9593 12 7 4.2710 3.6633 -4.6271 13 6 3.8714 3.7840 -6.0313 14 6 5.1200 3.8504 -6.9130 15 6 4.7090 3.9739 -8.3576 16 1 3.6619 4.0026 -8.6205 17 6 5.6697 4.0503 -9.3436 18 7 6.9449 4.0158 -9.0234 19 14 5.1602 4.1958 -11.1349 20 1 5.0146 2.8386 -11.7198 21 1 3.8639 4.9148 -11.2239 22 1 6.1969 4.9493 -11.8848 23 6 2.2265 1.9706 -1.1779 24 8 2.0409 1.3213 -2.1853 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.1946 1.6811 1.6999 31 1 1.4386 1.7569 1.9690 32 1 2.6225 4.0031 2.0567 33 1 1.2930 3.9155 0.8741 34 1 4.2241 3.4055 0.1815 35 1 3.4066 4.9732 -0.0452 36 1 4.6399 3.4516 -2.1353 37 1 5.2114 3.6380 -4.3909 38 1 3.2831 4.6918 -6.1650 39 1 3.2728 2.9182 -6.3144 40 1 5.7080 2.9423 -6.7793 41 1 5.7191 4.7159 -6.6300 42 1 7.2095 3.9407 -8.0932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921908064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:03 Heat of formation + Delta-G solvation = -77.357422 kcal Electronic energy + Delta-G solvation = -22532.075244 eV Core-core repulsion = 19125.627654 eV Total energy + Delta-G solvation = -3406.447590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96438 -39.22808 -36.67874 -35.86992 -34.73981 -33.27990 -32.83236 -30.35274 -29.64667 -28.39414 -25.00685 -24.24584 -23.42707 -22.11208 -21.35252 -20.54187 -19.14693 -17.99997 -17.16038 -16.77244 -16.54271 -16.46249 -15.13493 -14.98078 -14.63019 -14.39013 -14.13953 -13.98233 -13.74474 -13.69545 -13.59015 -13.08383 -12.75255 -12.32607 -12.16820 -12.12701 -11.87462 -11.64713 -11.56183 -11.36814 -11.15377 -10.91569 -10.38660 -10.12167 -10.06932 -9.91806 -9.76694 -8.94369 -8.89557 -8.64060 -8.39951 -8.24360 -6.39067 -4.08064 2.43003 2.71407 3.15431 3.46784 3.50078 3.66216 3.68141 4.26574 4.28911 4.34175 4.37639 4.54700 4.71391 4.83427 4.87519 4.95480 5.06579 5.13438 5.18811 5.35289 5.37612 5.39401 5.47252 5.53473 5.71645 5.75313 5.95976 6.22636 6.25790 6.36370 6.46022 6.72337 6.98372 7.13085 7.28291 7.42377 7.43914 8.13356 8.14934 8.42047 8.44870 8.85750 9.04519 9.63659 11.02259 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033039 B = 0.002969 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.269357 B = 9427.300051 C = 9871.509237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.609 5.609 4 C 0.113 3.887 5 C -0.132 4.132 6 C -0.130 4.130 7 C 0.159 3.841 8 H 0.117 0.883 9 N -0.738 5.738 10 C 0.705 3.295 11 O -0.582 6.582 12 N -0.740 5.740 13 C 0.149 3.851 14 C 0.000 4.000 15 C -0.600 4.600 16 H 0.054 0.946 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 1.074 2.926 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.284 1.284 23 C 0.495 3.505 24 O -0.516 6.516 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.391 0.609 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -2.924 27.412 28.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.345 5.345 4 C -0.010 4.010 5 C -0.170 4.170 6 C -0.168 4.168 7 C 0.049 3.951 8 H 0.135 0.865 9 N -0.394 5.394 10 C 0.405 3.595 11 O -0.458 6.458 12 N -0.393 5.393 13 C 0.026 3.974 14 C -0.037 4.037 15 C -0.638 4.638 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.549 5.549 19 Si 0.902 3.098 20 H -0.214 1.214 21 H -0.213 1.213 22 H -0.210 1.210 23 C 0.281 3.719 24 O -0.390 6.390 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.230 0.770 37 H 0.223 0.777 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.716 -3.085 24.957 26.304 hybrid contribution 0.278 -0.250 1.987 2.022 sum -7.438 -3.335 26.945 28.151 Atomic orbital electron populations 1.22092 0.95857 1.02201 1.02279 1.21444 0.94558 0.82793 1.03175 1.47494 1.66744 1.14530 1.05779 1.21400 1.01575 0.92987 0.85000 1.21840 1.00774 0.94883 0.99542 1.21963 0.99471 1.02855 0.92525 1.20519 0.93783 0.92904 0.87852 0.86524 1.44850 1.08560 1.81200 1.04830 1.15936 0.85673 0.77623 0.80252 1.90896 1.16205 1.57314 1.81420 1.45470 1.08009 1.78476 1.07390 1.21410 0.99182 1.00697 0.76114 1.19455 0.92563 0.96455 0.95263 1.21928 0.95268 1.55468 0.91183 0.92791 1.25885 0.93585 0.93639 1.05639 1.70772 1.16307 1.46507 1.21281 0.83469 0.75141 0.76851 0.74325 1.21369 1.21322 1.20990 1.20838 0.77978 0.90193 0.82928 1.90786 1.49351 1.63371 1.35452 0.91653 0.92798 0.92050 0.89533 0.90825 0.91698 0.90664 0.89115 0.90464 0.90497 0.89593 0.77008 0.77678 0.92646 0.92594 0.96903 0.96905 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.23 37.16 0.38 -1.07 16 2 C 0.10 0.96 5.94 -4.04 -0.02 0.93 16 3 N -0.61 -5.99 2.81 -174.96 -0.49 -6.48 16 4 C 0.11 0.63 6.32 -4.48 -0.03 0.60 16 5 C -0.13 -0.63 6.02 -26.60 -0.16 -0.79 16 6 C -0.13 -0.86 5.51 -26.51 -0.15 -1.01 16 7 C 0.16 1.91 2.70 -69.30 -0.19 1.72 16 8 H 0.12 1.59 7.58 -51.93 -0.39 1.19 16 9 N -0.74 -10.18 4.97 -60.03 -0.30 -10.48 16 10 C 0.71 13.56 7.99 -86.91 -0.69 12.87 16 11 O -0.58 -13.71 15.54 3.50 0.05 -13.66 16 12 N -0.74 -14.20 5.56 -65.23 -0.36 -14.56 16 13 C 0.15 3.45 5.61 -4.04 -0.02 3.43 16 14 C 0.00 0.00 4.40 -27.88 -0.12 -0.12 16 15 C -0.60 -17.49 9.11 -34.44 -0.31 -17.80 16 16 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 18 N -0.91 -28.02 13.65 55.43 0.76 -27.26 16 19 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.50 6.87 7.19 -11.87 -0.09 6.78 16 24 O -0.52 -9.96 14.92 3.76 0.06 -9.91 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.03 7.13 -51.93 -0.37 0.66 16 29 H 0.07 0.48 8.01 -51.93 -0.42 0.06 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 34 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 37 H 0.39 6.35 8.49 -40.82 -0.35 6.00 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.01 0.34 8.01 -51.92 -0.42 -0.08 16 41 H 0.01 0.33 8.00 -51.93 -0.42 -0.08 16 42 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -38.37 345.40 -8.52 -46.89 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.85 Total: 3.60 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.50 Total: 5.93 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.40 Total: -58.78 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.11 Total: -23.56 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.37 -8.52 -46.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921908064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.470 kcal (2) G-P(sol) polarization free energy of solvation -38.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds