Wall clock time and date at job start Tue Mar 31 2020 02:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46720 * 2 1 4 4 C 1.45762 * 117.94254 * 90.00328 * 3 2 1 5 5 C 1.52917 * 110.48801 * 199.07212 * 4 3 2 6 6 C 1.53345 * 108.67350 * 309.24769 * 5 4 3 7 7 C 1.53073 * 108.42625 * 67.53233 * 6 5 4 8 8 H 1.08993 * 109.40073 * 71.14232 * 7 6 5 9 9 N 1.46498 * 109.39908 * 190.96860 * 7 6 5 10 10 C 1.34775 * 119.99689 * 204.99473 * 9 7 6 11 11 O 1.21583 * 120.00141 * 0.02562 * 10 9 7 12 12 N 1.34786 * 119.99796 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99733 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46992 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47525 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 14 20 20 H 1.48502 * 109.46964 * 270.27509 * 19 17 15 21 21 H 1.48505 * 109.47036 * 30.26897 * 19 17 15 22 22 H 1.48490 * 109.47395 * 150.27411 * 19 17 15 23 23 C 1.33343 * 117.95271 * 269.99974 * 3 2 1 24 24 O 1.21284 * 118.24677 * 357.78126 * 23 3 2 25 25 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47168 * 299.99623 * 1 2 3 27 27 H 1.09003 * 109.47380 * 59.99941 * 1 2 3 28 28 H 1.09003 * 109.47158 * 240.00686 * 2 1 3 29 29 H 1.08990 * 109.47224 * 120.00348 * 2 1 3 30 30 H 1.09007 * 109.30006 * 78.75977 * 4 3 2 31 31 H 1.08997 * 109.13337 * 319.27875 * 4 3 2 32 32 H 1.09001 * 109.60513 * 189.48966 * 5 4 3 33 33 H 1.09002 * 109.73727 * 69.08004 * 5 4 3 34 34 H 1.09000 * 109.67788 * 307.79617 * 6 5 4 35 35 H 1.09002 * 109.67228 * 187.26344 * 6 5 4 36 36 H 0.97001 * 120.00384 * 25.00432 * 9 7 6 37 37 H 0.97000 * 119.99687 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47421 * 60.00536 * 13 12 10 39 39 H 1.09001 * 109.47150 * 300.00145 * 13 12 10 40 40 H 1.09009 * 109.47378 * 60.00101 * 14 13 12 41 41 H 1.08998 * 109.47458 * 300.00562 * 14 13 12 42 42 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2459 2.0252 1.2877 5 6 2.2868 3.5453 1.1262 6 6 3.2665 3.8931 -0.0011 7 6 2.6786 3.3952 -1.3238 8 1 1.8272 4.0177 -1.5986 9 7 3.6994 3.4770 -2.3714 10 6 3.3318 3.5875 -3.6633 11 8 2.1530 3.6198 -3.9593 12 7 4.2710 3.6633 -4.6271 13 6 3.8714 3.7840 -6.0313 14 6 5.1200 3.8504 -6.9130 15 6 4.7090 3.9739 -8.3576 16 1 3.6619 4.0026 -8.6205 17 6 5.6697 4.0503 -9.3436 18 7 6.9449 4.0158 -9.0234 19 14 5.1602 4.1958 -11.1349 20 1 5.0146 2.8386 -11.7198 21 1 3.8639 4.9148 -11.2239 22 1 6.1969 4.9493 -11.8848 23 6 2.2265 1.9706 -1.1779 24 8 2.0409 1.3213 -2.1853 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.1946 1.6811 1.6999 31 1 1.4386 1.7569 1.9690 32 1 2.6225 4.0031 2.0567 33 1 1.2930 3.9155 0.8741 34 1 4.2241 3.4055 0.1815 35 1 3.4066 4.9732 -0.0452 36 1 4.6399 3.4516 -2.1353 37 1 5.2114 3.6380 -4.3909 38 1 3.2831 4.6918 -6.1650 39 1 3.2728 2.9182 -6.3144 40 1 5.7080 2.9423 -6.7793 41 1 5.7191 4.7159 -6.6300 42 1 7.2095 3.9407 -8.0932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921908064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:02 Heat of formation + Delta-G solvation = -107.086890 kcal Electronic energy + Delta-G solvation = -22533.364411 eV Core-core repulsion = 19125.627654 eV Total energy + Delta-G solvation = -3407.736757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98219 -40.65476 -37.59165 -37.17313 -36.39682 -35.07133 -34.09749 -31.49771 -30.92170 -29.57802 -26.42182 -25.54189 -24.46220 -23.28749 -22.82581 -22.04430 -20.15037 -19.37530 -18.62010 -18.15415 -17.71554 -17.52490 -16.53626 -16.36150 -15.75937 -15.61650 -15.47494 -15.23066 -15.04225 -14.83557 -14.71299 -14.30016 -14.19813 -13.68961 -13.45368 -13.13340 -12.91442 -12.84561 -12.53047 -12.31526 -12.25751 -12.08907 -11.99149 -11.89054 -11.82208 -11.48332 -11.20631 -10.81191 -10.59425 -10.30774 -9.84152 -9.71801 -8.74137 -6.44524 1.29101 1.53202 1.61786 1.78137 1.80989 1.96087 2.24783 2.54953 3.11801 3.24375 3.51082 3.62029 3.81229 3.98917 4.11657 4.19766 4.26633 4.32392 4.33244 4.44353 4.54305 4.62642 4.64799 4.77484 4.82150 4.97859 5.03724 5.05593 5.07665 5.19829 5.24496 5.31579 5.36206 5.41176 5.53091 5.88928 5.92812 6.12134 6.42826 6.51894 7.01907 7.16681 7.35035 7.53710 8.68478 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033039 B = 0.002969 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.269357 B = 9427.300051 C = 9871.509237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.599 5.599 4 C 0.102 3.898 5 C -0.127 4.127 6 C -0.119 4.119 7 C 0.154 3.846 8 H 0.095 0.905 9 N -0.717 5.717 10 C 0.702 3.298 11 O -0.629 6.629 12 N -0.734 5.734 13 C 0.169 3.831 14 C 0.010 3.990 15 C -0.624 4.624 16 H 0.048 0.952 17 C -0.031 4.031 18 N -0.932 5.932 19 Si 1.121 2.879 20 H -0.273 1.273 21 H -0.272 1.272 22 H -0.277 1.277 23 C 0.487 3.513 24 O -0.586 6.586 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.021 0.979 28 H 0.051 0.949 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.415 0.585 37 H 0.407 0.593 38 H 0.045 0.955 39 H 0.033 0.967 40 H 0.003 0.997 41 H 0.010 0.990 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 -2.581 30.259 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.332 5.332 4 C -0.019 4.019 5 C -0.165 4.165 6 C -0.157 4.157 7 C 0.045 3.955 8 H 0.112 0.888 9 N -0.374 5.374 10 C 0.402 3.598 11 O -0.509 6.509 12 N -0.389 5.389 13 C 0.044 3.956 14 C -0.027 4.027 15 C -0.663 4.663 16 H 0.066 0.934 17 C -0.230 4.230 18 N -0.569 5.569 19 Si 0.942 3.058 20 H -0.198 1.198 21 H -0.197 1.197 22 H -0.202 1.202 23 C 0.273 3.727 24 O -0.465 6.465 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.252 0.748 37 H 0.242 0.758 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.022 0.978 41 H 0.029 0.971 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.267 -2.743 27.951 29.010 hybrid contribution 0.127 -0.399 1.261 1.329 sum -7.140 -3.141 29.212 30.236 Atomic orbital electron populations 1.22039 0.95453 1.02903 1.01370 1.21563 0.94907 0.82624 1.03331 1.47622 1.64613 1.14681 1.06289 1.21842 1.03798 0.93376 0.82842 1.21905 1.00006 0.94426 1.00193 1.22006 1.00350 1.03742 0.89576 1.20805 0.93159 0.91844 0.89700 0.88751 1.44663 1.10196 1.79369 1.03216 1.16130 0.84757 0.77206 0.81711 1.90861 1.18243 1.59323 1.82518 1.45131 1.09012 1.78725 1.06014 1.20880 0.97441 0.99171 0.78064 1.19282 0.93204 0.95662 0.94581 1.22331 0.95240 1.55628 0.93060 0.93363 1.27397 0.93084 0.92479 1.09992 1.70891 1.17164 1.47993 1.20812 0.82884 0.75598 0.77803 0.69553 1.19850 1.19696 1.20246 1.21190 0.77555 0.90642 0.83291 1.90759 1.52731 1.65039 1.38015 0.90272 0.90485 0.95953 0.93050 0.86848 0.89291 0.88217 0.85352 0.91173 0.88735 0.88079 0.74814 0.75807 0.93639 0.94814 0.97832 0.97126 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.23 71.98 0.74 -1.95 16 2 C 0.10 1.74 5.94 86.38 0.51 2.25 16 3 N -0.60 -10.89 2.81 -826.64 -2.32 -13.21 16 4 C 0.10 0.72 6.32 86.49 0.55 1.27 16 5 C -0.13 -0.70 6.02 30.68 0.18 -0.52 16 6 C -0.12 -1.20 5.51 30.73 0.17 -1.03 16 7 C 0.15 3.63 2.70 44.11 0.12 3.75 16 8 H 0.09 2.67 7.58 -2.39 -0.02 2.65 16 9 N -0.72 -19.67 4.97 -462.10 -2.30 -21.97 16 10 C 0.70 27.80 7.99 179.05 1.43 29.23 16 11 O -0.63 -31.15 15.54 -2.26 -0.04 -31.18 16 12 N -0.73 -28.79 5.56 -478.54 -2.66 -31.45 16 13 C 0.17 8.13 5.61 86.38 0.48 8.62 16 14 C 0.01 0.54 4.40 29.85 0.13 0.67 16 15 C -0.62 -37.01 9.11 25.60 0.23 -36.78 16 16 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 17 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 18 N -0.93 -57.54 13.65 21.45 0.29 -57.25 16 19 Si 1.12 51.54 29.90 68.60 2.05 53.59 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.49 13.71 7.19 87.72 0.63 14.34 16 24 O -0.59 -24.10 14.92 -1.33 -0.02 -24.12 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 1.29 7.13 -2.39 -0.02 1.27 16 29 H 0.11 1.10 8.01 -2.39 -0.02 1.08 16 30 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.10 0.31 8.10 -2.39 -0.02 0.29 16 32 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 34 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.41 8.14 8.60 -92.71 -0.80 7.34 16 37 H 0.41 13.20 8.49 -92.71 -0.79 12.42 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.00 0.19 8.01 -2.38 -0.02 0.17 16 41 H 0.01 0.56 8.00 -2.39 -0.02 0.54 16 42 H 0.26 15.94 7.22 -92.70 -0.67 15.27 16 Total: -1.00 -88.76 345.40 0.19 -88.57 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.46 Total: 18.57 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 5.64 Total: 18.46 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -6.99 Total: -123.89 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.05 Total: -55.30 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.05 Total: 53.59 kcal Total: -88.76 0.19 -88.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921908064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.519 kcal (2) G-P(sol) polarization free energy of solvation -88.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds