Wall clock time and date at job start Tue Mar 31 2020 03:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48189 * 111.07494 * 2 1 4 4 C 1.53935 * 86.21981 * 222.53695 * 3 2 1 5 5 C 1.47960 * 111.00084 * 260.70714 * 2 1 3 6 6 H 1.09000 * 113.76054 * 23.15680 * 5 2 1 7 7 C 1.53000 * 113.75970 * 251.90459 * 5 2 1 8 8 N 1.46495 * 109.47208 * 76.31158 * 7 5 2 9 9 C 1.34781 * 120.00015 * 180.02562 * 8 7 5 10 10 O 1.21585 * 119.99794 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99950 * 180.02562 * 9 8 7 12 12 C 1.47018 * 125.64993 * 359.97262 * 11 9 8 13 13 C 1.54325 * 107.40412 * 178.90064 * 12 11 9 14 14 C 1.55405 * 102.82616 * 337.97548 * 13 12 11 15 15 O 1.42894 * 110.89418 * 277.26698 * 14 13 12 16 16 C 1.50704 * 111.07313 * 153.48318 * 14 13 12 17 17 H 1.08006 * 119.99604 * 6.21211 * 16 14 13 18 18 C 1.37874 * 120.00539 * 186.20801 * 16 14 13 19 19 N 1.31519 * 119.99600 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00227 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47002 * 90.00361 * 20 18 16 22 22 H 1.48498 * 109.46826 * 210.00124 * 20 18 16 23 23 H 1.48492 * 109.47052 * 330.00560 * 20 18 16 24 24 C 1.47426 * 125.64489 * 180.02562 * 11 9 8 25 25 H 1.08992 * 109.47348 * 159.28958 * 1 2 3 26 26 H 1.08996 * 109.47149 * 279.29595 * 1 2 3 27 27 H 1.09007 * 109.46878 * 39.28921 * 1 2 3 28 28 H 1.08993 * 113.82415 * 108.19058 * 3 2 1 29 29 H 1.09000 * 113.75504 * 336.87025 * 3 2 1 30 30 H 1.09001 * 113.73306 * 269.26751 * 4 3 2 31 31 H 1.09001 * 113.82957 * 138.00232 * 4 3 2 32 32 H 1.08999 * 109.46892 * 316.30998 * 7 5 2 33 33 H 1.08996 * 109.46776 * 196.31205 * 7 5 2 34 34 H 0.97001 * 120.00572 * 0.02562 * 8 7 5 35 35 H 1.09002 * 109.88241 * 298.39592 * 12 11 9 36 36 H 1.09000 * 109.88049 * 59.40721 * 12 11 9 37 37 H 1.09000 * 110.72188 * 96.24097 * 13 12 11 38 38 H 1.09002 * 110.72265 * 219.52294 * 13 12 11 39 39 H 0.96703 * 114.00602 * 173.68794 * 15 14 13 40 40 H 0.96998 * 120.00006 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.36956 * 322.93474 * 24 11 9 42 42 H 1.09001 * 110.36709 * 85.14667 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3828 0.0000 4 6 3.0215 0.8811 -1.0384 5 6 1.9993 -0.2231 -1.3632 6 1 1.3004 0.0448 -2.1556 7 6 2.6262 -1.6044 -1.5624 8 7 1.5665 -2.6065 -1.6995 9 6 1.8849 -3.9030 -1.8846 10 8 3.0516 -4.2408 -1.9382 11 7 0.9099 -4.8249 -2.0112 12 6 -0.5347 -4.5559 -1.9666 13 6 -1.2615 -5.9000 -2.1829 14 6 -0.1853 -6.7628 -2.8987 15 8 -0.1633 -6.4898 -4.3011 16 6 -0.4079 -8.2308 -2.6404 17 1 -1.2898 -8.5580 -2.1096 18 6 0.5139 -9.1561 -3.0818 19 7 1.5880 -8.7576 -3.7279 20 14 0.2375 -10.9757 -2.7623 21 1 -0.5255 -11.5661 -3.8913 22 1 1.5489 -11.6613 -2.6389 23 1 -0.5307 -11.1460 -1.5030 24 6 1.1156 -6.2703 -2.2164 25 1 -0.3633 -0.9612 -0.3634 26 1 -0.3633 0.1660 1.0141 27 1 -0.3633 0.7954 -0.6508 28 1 2.4506 1.6817 0.9472 29 1 1.3037 2.1224 -0.3919 30 1 3.9466 0.5072 -0.5998 31 1 3.1918 1.5768 -1.8601 32 1 3.2481 -1.8487 -0.7012 33 1 3.2395 -1.5985 -2.4634 34 1 0.6356 -2.3371 -1.6571 35 1 -0.8047 -4.1406 -0.9956 36 1 -0.8061 -3.8563 -2.7572 37 1 -1.5400 -6.3459 -1.2281 38 1 -2.1374 -5.7670 -2.8179 39 1 0.5543 -6.9306 -4.7765 40 1 2.2368 -9.4085 -4.0381 41 1 1.9736 -6.4429 -2.8661 42 1 1.2579 -6.7728 -1.2597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925431826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:03 Heat of formation + Delta-G solvation = -64.360453 kcal Electronic energy + Delta-G solvation = -23102.308688 eV Core-core repulsion = 19696.424689 eV Total energy + Delta-G solvation = -3405.883999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42030 -40.68995 -39.04317 -36.03360 -35.55405 -34.22360 -32.02464 -31.49577 -29.74953 -29.05206 -26.81298 -25.02949 -24.57348 -23.67216 -21.48239 -21.23731 -20.38182 -19.25591 -18.80753 -17.47198 -17.14718 -16.90301 -16.67979 -16.35590 -15.98711 -15.89901 -15.25751 -15.04445 -14.74322 -14.58324 -14.06628 -13.99563 -13.75002 -13.50495 -13.33739 -12.98840 -12.83237 -12.53547 -12.39368 -12.35223 -12.32500 -12.22700 -12.08669 -11.82300 -11.69681 -11.28663 -11.18037 -10.65718 -10.32592 -10.18280 -9.76064 -9.32255 -8.23479 -6.41019 1.42618 1.44677 1.54602 1.68875 2.15837 2.39217 2.85706 3.02521 3.12025 3.57841 3.77929 3.81502 4.04924 4.11002 4.16139 4.19091 4.32509 4.35524 4.42620 4.54698 4.59908 4.65424 4.76289 4.81416 4.85409 4.98738 4.99843 5.07071 5.10064 5.25032 5.30255 5.37393 5.39644 5.46662 5.51579 5.76579 6.05497 6.10923 6.18164 6.66427 7.06242 7.28204 7.35733 7.57526 8.81715 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.003620 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.603294 B = 7732.917303 C = 8077.166339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.504 5.504 3 C 0.006 3.994 4 C -0.130 4.130 5 C 0.021 3.979 6 H 0.099 0.901 7 C 0.159 3.841 8 N -0.726 5.726 9 C 0.708 3.292 10 O -0.646 6.646 11 N -0.635 5.635 12 C 0.108 3.892 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.587 6.587 16 C -0.556 4.556 17 H 0.070 0.930 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.130 3.870 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.404 0.596 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.372 0.628 40 H 0.269 0.731 41 H 0.043 0.957 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 19.959 5.610 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.227 5.227 3 C -0.122 4.122 4 C -0.168 4.168 5 C -0.089 4.089 6 H 0.117 0.883 7 C 0.035 3.965 8 N -0.383 5.383 9 C 0.410 3.590 10 O -0.529 6.529 11 N -0.371 5.371 12 C -0.014 4.014 13 C -0.147 4.147 14 C 0.192 3.808 15 O -0.394 6.394 16 C -0.595 4.595 17 H 0.088 0.912 18 C -0.176 4.176 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.189 1.189 24 C 0.006 3.994 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.221 0.779 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.208 19.649 6.207 20.854 hybrid contribution 0.059 -1.146 -0.720 1.355 sum -3.149 18.503 5.488 19.555 Atomic orbital electron populations 1.22909 0.88839 1.01648 1.02710 1.68575 1.10156 1.20192 1.23827 1.23982 0.97239 0.90394 1.00612 1.23309 0.97668 0.96203 0.99597 1.23721 0.98771 0.93768 0.92606 0.88333 1.21146 0.89195 0.85399 1.00787 1.44905 1.10745 1.04257 1.78346 1.15782 0.83683 0.81422 0.78086 1.90839 1.19411 1.81103 1.61508 1.47874 1.06466 1.07935 1.74864 1.22079 0.78996 0.98559 1.01741 1.22631 0.97835 0.93512 1.00760 1.19921 0.89651 0.92428 0.78811 1.86087 1.56247 1.74822 1.22238 1.21802 1.07867 0.91804 1.37985 0.91217 1.25852 0.94191 1.03803 0.93755 1.69855 1.11211 1.36128 1.38283 0.85446 0.77372 0.79264 0.78898 1.19967 1.21252 1.18877 1.22639 1.01345 0.77020 0.98398 0.91985 0.90783 0.93092 0.88846 0.89446 0.89243 0.88563 0.92877 0.91931 0.76017 0.89633 0.90940 0.89318 0.89437 0.77919 0.92214 0.93881 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 9.65 127.69 1.23 1.05 16 2 N -0.50 -9.02 6.37 -906.84 -5.77 -14.79 16 3 C 0.01 0.07 7.98 86.36 0.69 0.76 16 4 C -0.13 -1.71 7.86 31.24 0.25 -1.46 16 5 C 0.02 0.37 3.34 45.02 0.15 0.52 16 6 H 0.10 1.46 7.92 -2.39 -0.02 1.44 16 7 C 0.16 4.21 5.71 86.38 0.49 4.70 16 8 N -0.73 -22.31 5.52 -478.55 -2.64 -24.95 16 9 C 0.71 30.26 8.49 179.05 1.52 31.78 16 10 O -0.65 -33.69 16.60 -3.98 -0.07 -33.75 16 11 N -0.63 -27.06 3.33 -829.73 -2.76 -29.82 16 12 C 0.11 3.58 6.14 86.73 0.53 4.12 16 13 C -0.11 -4.15 6.15 31.87 0.20 -3.96 16 14 C 0.23 11.38 0.87 -10.05 -0.01 11.37 16 15 O -0.59 -30.40 13.16 -148.98 -1.96 -32.37 16 16 C -0.56 -29.25 8.28 25.60 0.21 -29.04 16 17 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 18 C 0.02 1.32 5.29 84.65 0.45 1.77 16 19 N -0.92 -50.99 10.69 21.45 0.23 -50.76 16 20 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 24 C 0.13 6.61 5.39 86.86 0.47 7.08 16 25 H 0.06 0.97 7.15 -2.39 -0.02 0.95 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 0.57 7.63 -2.38 -0.02 0.55 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 0.78 7.62 -2.39 -0.02 0.76 16 30 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.40 10.07 6.46 -92.71 -0.60 9.47 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 3.14 8.03 -2.39 -0.02 3.12 16 38 H 0.09 3.06 8.14 -2.39 -0.02 3.05 16 39 H 0.37 20.36 7.57 -74.06 -0.56 19.80 16 40 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.04 2.53 7.33 -2.39 -0.02 2.51 16 42 H 0.04 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -69.25 338.73 -4.90 -74.15 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -0.14 Total: 39.29 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 6.18 Total: 28.70 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -10.94 Total: -120.32 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: -2.03 Total: -66.12 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -69.25 -4.90 -74.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925431826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.791 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds