Wall clock time and date at job start Tue Mar 31 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47020 * 110.99785 * 2 1 4 4 C 1.53097 * 109.25763 * 182.39194 * 3 2 1 5 5 O 1.43008 * 109.29456 * 303.17267 * 4 3 2 6 6 C 1.43018 * 113.73737 * 58.60190 * 5 4 3 7 7 H 1.08992 * 109.50852 * 61.35607 * 6 5 4 8 8 C 1.50706 * 109.50602 * 181.44446 * 6 5 4 9 9 O 1.21279 * 120.00118 * 9.12009 * 8 6 5 10 10 N 1.34781 * 119.99935 * 189.12446 * 8 6 5 11 11 C 1.47016 * 125.64729 * 175.34638 * 10 8 6 12 12 C 1.54320 * 107.27056 * 180.79320 * 11 10 8 13 13 C 1.55153 * 102.94396 * 22.19199 * 12 11 10 14 14 H 1.08997 * 111.00500 * 82.57254 * 13 12 11 15 15 N 1.46501 * 111.00636 * 206.38970 * 13 12 11 16 16 C 1.36936 * 119.99639 * 273.54484 * 15 13 12 17 17 H 1.08002 * 120.00365 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99924 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99945 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47061 * 60.00288 * 20 18 16 22 22 H 1.48506 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47286 * 299.99993 * 20 18 16 24 24 C 1.47425 * 125.64524 * 355.03495 * 10 8 6 25 25 C 1.47012 * 111.00320 * 123.63272 * 2 1 3 26 26 H 1.08998 * 109.46991 * 296.36368 * 1 2 3 27 27 H 1.08998 * 109.47495 * 56.37163 * 1 2 3 28 28 H 1.09002 * 109.46412 * 176.36452 * 1 2 3 29 29 H 1.09004 * 109.50096 * 302.32423 * 3 2 1 30 30 H 1.08994 * 109.50681 * 62.45741 * 3 2 1 31 31 H 1.09007 * 109.50752 * 63.08458 * 4 3 2 32 32 H 1.09002 * 109.50312 * 183.16842 * 4 3 2 33 33 H 1.08999 * 109.88102 * 300.20983 * 11 10 8 34 34 H 1.09002 * 109.88507 * 61.37356 * 11 10 8 35 35 H 1.08998 * 110.72172 * 140.55658 * 12 11 10 36 36 H 1.09005 * 110.72124 * 263.82551 * 12 11 10 37 37 H 0.96997 * 120.00054 * 93.54474 * 15 13 12 38 38 H 0.96995 * 120.00518 * 180.02562 * 19 18 16 39 39 H 1.08998 * 110.36260 * 274.97337 * 24 10 8 40 40 H 1.08993 * 110.36977 * 37.29769 * 24 10 8 41 41 H 1.08999 * 109.50444 * 57.67518 * 25 2 1 42 42 H 1.09004 * 109.50731 * 297.54928 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0183 0.5573 1.0397 6 6 3.5250 -0.7848 1.0709 7 1 3.8386 -1.3089 0.1682 8 6 4.0742 -1.4948 2.2815 9 8 4.6772 -0.8708 3.1288 10 7 3.8954 -2.8232 2.4224 11 6 4.4571 -3.6540 3.4974 12 6 4.0043 -5.1063 3.2380 13 6 3.6829 -5.1044 1.7202 14 1 4.5887 -5.2379 1.1288 15 7 2.6892 -6.1298 1.3925 16 6 3.0906 -7.4114 1.1249 17 1 4.1397 -7.6661 1.1550 18 6 2.1491 -8.3832 0.8149 19 7 0.8705 -8.0729 0.7787 20 14 2.6967 -10.1312 0.4492 21 1 3.4079 -10.6843 1.6297 22 1 1.5082 -10.9699 0.1501 23 1 3.6093 -10.1292 -0.7223 24 6 3.0987 -3.6825 1.5278 25 6 1.9959 -0.7602 1.1427 26 1 -0.3633 0.4563 0.9208 27 1 -0.3634 0.5691 -0.8556 28 1 -0.3632 -1.0257 -0.0652 29 1 1.6133 1.9092 -0.8683 30 1 1.6827 1.8826 0.9109 31 1 3.8385 0.8644 -0.9965 32 1 3.9220 2.3401 -0.0038 33 1 5.5454 -3.5963 3.4802 34 1 4.0810 -3.3153 4.4628 35 1 4.8092 -5.8068 3.4609 36 1 3.1138 -5.3426 3.8206 37 1 1.7470 -5.9009 1.3651 38 1 0.2126 -8.7520 0.5624 39 1 2.0483 -3.6615 1.8180 40 1 3.2137 -3.3620 0.4924 41 1 1.6135 -1.7803 1.1087 42 1 1.6827 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968304977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:48 Heat of formation + Delta-G solvation = -46.903544 kcal Electronic energy + Delta-G solvation = -23158.805300 eV Core-core repulsion = 19753.678289 eV Total energy + Delta-G solvation = -3405.127011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51188 -39.02790 -37.26612 -35.82155 -34.13432 -32.23066 -31.24297 -29.78933 -28.71938 -27.71700 -25.38525 -24.34642 -23.71910 -22.54433 -20.79779 -20.20070 -19.31580 -17.44841 -17.33753 -16.50933 -16.28423 -16.00274 -15.38840 -15.29237 -15.09897 -14.48794 -14.13501 -13.97236 -13.60846 -13.46060 -13.22909 -12.80332 -12.65928 -12.52838 -12.28956 -11.94330 -11.89233 -11.62648 -11.53916 -11.18840 -10.97180 -10.86857 -10.76481 -10.34438 -10.14211 -9.89599 -9.82768 -9.59741 -9.00667 -8.70662 -8.48650 -7.11066 -5.87793 -3.18504 2.59854 2.73883 3.38749 3.43806 3.44220 3.53124 3.83863 4.43736 4.53657 4.60616 4.66661 4.80790 4.91858 5.02174 5.05956 5.20972 5.23740 5.27239 5.32877 5.38734 5.46705 5.51704 5.54208 5.56863 5.65566 5.68529 5.70680 5.86129 6.09464 6.15025 6.31633 6.45132 6.57367 6.58605 6.63337 6.85190 6.89036 7.60044 7.61575 8.22937 8.29637 9.41557 9.94016 10.29059 11.34319 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.004060 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.232681 B = 6895.176766 C = 7816.905334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.014 3.986 4 C 0.062 3.938 5 O -0.358 6.358 6 C 0.083 3.917 7 H 0.094 0.906 8 C 0.536 3.464 9 O -0.528 6.528 10 N -0.610 5.610 11 C 0.111 3.889 12 C -0.155 4.155 13 C 0.172 3.828 14 H 0.065 0.935 15 N -0.715 5.715 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.087 3.913 25 C 0.026 3.974 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 16.691 -1.516 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.276 6.276 6 C 0.021 3.979 7 H 0.111 0.889 8 C 0.322 3.678 9 O -0.403 6.403 10 N -0.345 5.345 11 C -0.011 4.011 12 C -0.196 4.196 13 C 0.061 3.939 14 H 0.083 0.917 15 N -0.355 5.355 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.037 4.037 25 C -0.102 4.102 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.220 0.780 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.831 16.782 -1.414 16.940 hybrid contribution -0.666 -0.638 0.324 0.978 sum 1.164 16.144 -1.090 16.222 Atomic orbital electron populations 1.22409 0.86173 1.03127 1.00679 1.62207 1.08770 1.13409 1.41973 1.22862 0.96652 0.90019 1.01922 1.22745 0.92189 0.96533 0.90019 1.88096 1.69190 1.21888 1.48395 1.21871 0.93163 0.85269 0.97569 0.88851 1.19607 0.80474 0.80717 0.86971 1.90700 1.41823 1.65057 1.42745 1.48362 1.50974 1.06144 1.29067 1.21996 0.98219 0.90943 0.89943 1.23439 1.02148 0.92754 1.01265 1.21287 0.93541 0.86405 0.92704 0.91663 1.42232 1.04671 1.05719 1.82904 1.19162 0.92775 0.85547 1.40197 0.90985 1.24750 0.95260 0.98344 1.02084 1.69637 0.99713 1.33566 1.54917 0.86251 0.77205 0.84393 0.78215 1.21159 1.21647 1.21130 1.22772 0.95406 0.91881 0.93623 1.22744 0.93946 1.00826 0.92718 0.95388 0.90965 0.90501 0.89313 0.93746 0.91908 0.87885 0.91774 0.91964 0.90563 0.90522 0.77978 0.93284 0.90904 0.90431 0.88235 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.60 60.07 0.58 0.79 16 2 N -0.54 -5.86 4.99 -242.59 -1.21 -7.07 16 3 C 0.01 0.13 5.66 -3.71 -0.02 0.11 16 4 C 0.06 0.62 7.01 37.21 0.26 0.89 16 5 O -0.36 -5.15 10.02 -54.94 -0.55 -5.70 16 6 C 0.08 1.14 2.54 -27.83 -0.07 1.07 16 7 H 0.09 1.20 7.53 -51.93 -0.39 0.81 16 8 C 0.54 8.78 7.21 -10.98 -0.08 8.70 16 9 O -0.53 -10.49 16.86 -14.15 -0.24 -10.73 16 10 N -0.61 -9.37 3.33 -170.53 -0.57 -9.94 16 11 C 0.11 1.68 6.87 -3.07 -0.02 1.66 16 12 C -0.15 -2.53 6.65 -24.90 -0.17 -2.69 16 13 C 0.17 3.11 3.68 -65.78 -0.24 2.87 16 14 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 15 N -0.71 -16.37 5.28 -51.35 -0.27 -16.64 16 16 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 20 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.09 1.31 5.00 -2.53 -0.01 1.30 16 25 C 0.03 0.32 4.80 -3.71 -0.02 0.30 16 26 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.39 9.34 7.71 -40.82 -0.31 9.03 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.07 1.09 7.32 -51.93 -0.38 0.71 16 40 H 0.08 1.08 7.21 -51.93 -0.37 0.71 16 41 H 0.10 1.20 5.97 -51.93 -0.31 0.89 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -31.31 336.62 -8.91 -40.22 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.81 Total: 6.15 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.04 Total: 8.16 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -1.32 Total: -59.56 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.79 Total: -16.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.31 -8.91 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968304977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.680 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds