Wall clock time and date at job start Tue Mar 31 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47020 * 110.99785 * 2 1 4 4 C 1.53097 * 109.25763 * 182.39194 * 3 2 1 5 5 O 1.43008 * 109.29456 * 303.17267 * 4 3 2 6 6 C 1.43018 * 113.73737 * 58.60190 * 5 4 3 7 7 H 1.08992 * 109.50852 * 61.35607 * 6 5 4 8 8 C 1.50706 * 109.50602 * 181.44446 * 6 5 4 9 9 O 1.21279 * 120.00118 * 9.12009 * 8 6 5 10 10 N 1.34781 * 119.99935 * 189.12446 * 8 6 5 11 11 C 1.47016 * 125.64729 * 175.34638 * 10 8 6 12 12 C 1.54320 * 107.27056 * 180.79320 * 11 10 8 13 13 C 1.55153 * 102.94396 * 22.19199 * 12 11 10 14 14 H 1.08997 * 111.00500 * 82.57254 * 13 12 11 15 15 N 1.46501 * 111.00636 * 206.38970 * 13 12 11 16 16 C 1.36936 * 119.99639 * 273.54484 * 15 13 12 17 17 H 1.08002 * 120.00365 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99924 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99945 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47061 * 60.00288 * 20 18 16 22 22 H 1.48506 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47286 * 299.99993 * 20 18 16 24 24 C 1.47425 * 125.64524 * 355.03495 * 10 8 6 25 25 C 1.47012 * 111.00320 * 123.63272 * 2 1 3 26 26 H 1.08998 * 109.46991 * 296.36368 * 1 2 3 27 27 H 1.08998 * 109.47495 * 56.37163 * 1 2 3 28 28 H 1.09002 * 109.46412 * 176.36452 * 1 2 3 29 29 H 1.09004 * 109.50096 * 302.32423 * 3 2 1 30 30 H 1.08994 * 109.50681 * 62.45741 * 3 2 1 31 31 H 1.09007 * 109.50752 * 63.08458 * 4 3 2 32 32 H 1.09002 * 109.50312 * 183.16842 * 4 3 2 33 33 H 1.08999 * 109.88102 * 300.20983 * 11 10 8 34 34 H 1.09002 * 109.88507 * 61.37356 * 11 10 8 35 35 H 1.08998 * 110.72172 * 140.55658 * 12 11 10 36 36 H 1.09005 * 110.72124 * 263.82551 * 12 11 10 37 37 H 0.96997 * 120.00054 * 93.54474 * 15 13 12 38 38 H 0.96995 * 120.00518 * 180.02562 * 19 18 16 39 39 H 1.08998 * 110.36260 * 274.97337 * 24 10 8 40 40 H 1.08993 * 110.36977 * 37.29769 * 24 10 8 41 41 H 1.08999 * 109.50444 * 57.67518 * 25 2 1 42 42 H 1.09004 * 109.50731 * 297.54928 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0183 0.5573 1.0397 6 6 3.5250 -0.7848 1.0709 7 1 3.8386 -1.3089 0.1682 8 6 4.0742 -1.4948 2.2815 9 8 4.6772 -0.8708 3.1288 10 7 3.8954 -2.8232 2.4224 11 6 4.4571 -3.6540 3.4974 12 6 4.0043 -5.1063 3.2380 13 6 3.6829 -5.1044 1.7202 14 1 4.5887 -5.2379 1.1288 15 7 2.6892 -6.1298 1.3925 16 6 3.0906 -7.4114 1.1249 17 1 4.1397 -7.6661 1.1550 18 6 2.1491 -8.3832 0.8149 19 7 0.8705 -8.0729 0.7787 20 14 2.6967 -10.1312 0.4492 21 1 3.4079 -10.6843 1.6297 22 1 1.5082 -10.9699 0.1501 23 1 3.6093 -10.1292 -0.7223 24 6 3.0987 -3.6825 1.5278 25 6 1.9959 -0.7602 1.1427 26 1 -0.3633 0.4563 0.9208 27 1 -0.3634 0.5691 -0.8556 28 1 -0.3632 -1.0257 -0.0652 29 1 1.6133 1.9092 -0.8683 30 1 1.6827 1.8826 0.9109 31 1 3.8385 0.8644 -0.9965 32 1 3.9220 2.3401 -0.0038 33 1 5.5454 -3.5963 3.4802 34 1 4.0810 -3.3153 4.4628 35 1 4.8092 -5.8068 3.4609 36 1 3.1138 -5.3426 3.8206 37 1 1.7470 -5.9009 1.3651 38 1 0.2126 -8.7520 0.5624 39 1 2.0483 -3.6615 1.8180 40 1 3.2137 -3.3620 0.4924 41 1 1.6135 -1.7803 1.1087 42 1 1.6827 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968304977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:47 Heat of formation + Delta-G solvation = -69.447096 kcal Electronic energy + Delta-G solvation = -23159.782862 eV Core-core repulsion = 19753.678289 eV Total energy + Delta-G solvation = -3406.104573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66065 -40.13129 -38.64923 -36.74390 -35.87653 -33.56241 -32.72712 -31.03982 -29.67323 -29.22295 -26.45673 -25.54524 -25.13844 -23.82285 -21.69734 -21.64102 -20.57549 -19.28396 -18.51721 -17.71517 -17.32494 -17.16317 -16.55085 -16.47218 -16.09490 -15.91791 -15.47086 -15.18498 -14.96946 -14.66822 -14.53741 -14.35757 -13.84380 -13.50908 -13.33496 -13.10610 -13.02762 -12.90203 -12.80229 -12.62964 -12.46377 -12.30753 -12.12520 -11.84726 -11.73691 -11.59691 -10.93729 -10.90549 -10.81397 -9.79068 -9.53520 -9.01569 -7.92108 -5.21197 1.33762 1.52414 1.54156 1.56324 1.60415 2.57489 2.67593 2.82078 3.37220 3.41552 3.59843 3.75624 3.81341 3.84674 3.92904 4.03314 4.10843 4.26568 4.27637 4.29615 4.43948 4.47888 4.56036 4.58736 4.62597 4.67498 4.77104 4.80548 4.88755 4.96824 5.00230 5.12730 5.23178 5.40856 5.57353 5.74808 5.87387 5.96134 6.28396 6.33991 6.94670 7.37270 8.07713 8.32232 9.30593 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.004060 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.232681 B = 6895.176766 C = 7816.905334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.014 3.986 4 C 0.056 3.944 5 O -0.386 6.386 6 C 0.088 3.912 7 H 0.105 0.895 8 C 0.535 3.465 9 O -0.567 6.567 10 N -0.606 5.606 11 C 0.115 3.885 12 C -0.143 4.143 13 C 0.165 3.835 14 H 0.066 0.934 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.078 0.922 18 C -0.067 4.067 19 N -0.966 5.966 20 Si 0.968 3.032 21 H -0.280 1.280 22 H -0.299 1.299 23 H -0.278 1.278 24 C 0.100 3.900 25 C 0.033 3.967 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 17.464 -2.380 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.113 4.113 4 C -0.020 4.020 5 O -0.305 6.305 6 C 0.027 3.973 7 H 0.122 0.878 8 C 0.323 3.677 9 O -0.445 6.445 10 N -0.340 5.340 11 C -0.008 4.008 12 C -0.184 4.184 13 C 0.055 3.945 14 H 0.084 0.916 15 N -0.364 5.364 16 C -0.373 4.373 17 H 0.096 0.904 18 C -0.260 4.260 19 N -0.616 5.616 20 Si 0.797 3.203 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.204 1.204 24 C -0.023 4.023 25 C -0.096 4.096 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.210 0.790 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.302 17.574 -2.280 17.870 hybrid contribution -0.752 -0.785 0.601 1.242 sum 1.551 16.789 -1.679 16.944 Atomic orbital electron populations 1.22468 0.85090 1.03331 1.01553 1.62251 1.09793 1.14183 1.40842 1.22934 0.96198 0.89370 1.02827 1.23039 0.92745 0.97120 0.89123 1.88062 1.69980 1.22137 1.50293 1.21813 0.93847 0.85345 0.96319 0.87777 1.20112 0.79697 0.80635 0.87301 1.90675 1.43720 1.65799 1.44349 1.48364 1.50641 1.06110 1.28931 1.21968 0.98682 0.89955 0.90166 1.23243 1.01850 0.93753 0.99508 1.21443 0.92659 0.86800 0.93609 0.91626 1.42326 1.05104 1.05890 1.83108 1.19529 0.92950 0.86729 1.38054 0.90386 1.25454 0.95419 1.01795 1.03319 1.69777 1.00587 1.34218 1.57003 0.85306 0.76447 0.80362 0.78186 1.20609 1.22504 1.20443 1.22623 0.95236 0.89981 0.94487 1.22621 0.92961 1.01092 0.92899 0.95333 0.89093 0.90842 0.86659 0.94362 0.91052 0.85753 0.91007 0.91583 0.90073 0.91593 0.78981 0.94014 0.90528 0.88830 0.88198 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.60 127.69 1.23 1.60 16 2 N -0.55 -10.78 4.99 -921.43 -4.59 -15.38 16 3 C 0.01 0.24 5.66 86.31 0.49 0.73 16 4 C 0.06 1.00 7.01 72.01 0.50 1.51 16 5 O -0.39 -10.67 10.02 -130.13 -1.30 -11.97 16 6 C 0.09 2.33 2.54 29.88 0.08 2.40 16 7 H 0.10 2.50 7.53 -2.39 -0.02 2.48 16 8 C 0.53 17.11 7.21 87.66 0.63 17.75 16 9 O -0.57 -22.45 16.86 15.82 0.27 -22.18 16 10 N -0.61 -17.92 3.33 -811.81 -2.70 -20.62 16 11 C 0.11 3.33 6.87 86.73 0.60 3.92 16 12 C -0.14 -4.50 6.65 31.78 0.21 -4.29 16 13 C 0.17 5.76 3.68 46.38 0.17 5.93 16 14 H 0.07 2.31 8.13 -2.39 -0.02 2.30 16 15 N -0.72 -32.78 5.28 -316.37 -1.67 -34.45 16 16 C -0.24 -12.33 9.98 84.04 0.84 -11.49 16 17 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 18 C -0.07 -3.61 5.50 84.86 0.47 -3.15 16 19 N -0.97 -55.70 13.06 21.65 0.28 -55.42 16 20 Si 0.97 43.80 29.55 68.60 2.03 45.83 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 C 0.10 2.88 5.00 86.86 0.43 3.31 16 25 C 0.03 0.78 4.80 86.31 0.41 1.19 16 26 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.38 18.27 7.71 -92.71 -0.72 17.55 16 38 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.08 2.20 7.32 -2.39 -0.02 2.18 16 40 H 0.09 2.43 7.21 -2.39 -0.02 2.41 16 41 H 0.10 2.29 5.97 -2.39 -0.01 2.27 16 42 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -66.21 336.62 -1.34 -67.55 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.29 Total: 27.22 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.06 Total: 19.42 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -8.68 Total: -125.87 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.04 Total: -34.15 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -66.21 -1.34 -67.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968304977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.893 kcal (2) G-P(sol) polarization free energy of solvation -66.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds