Wall clock time and date at job start Tue Mar 31 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47014 * 111.00168 * 2 1 4 4 C 1.53100 * 109.25880 * 177.61320 * 3 2 1 5 5 O 1.43012 * 109.26220 * 56.84262 * 4 3 2 6 6 C 1.43014 * 113.73893 * 301.33479 * 5 4 3 7 7 H 1.08999 * 109.54516 * 298.71041 * 6 5 4 8 8 C 1.50703 * 109.50564 * 178.60274 * 6 5 4 9 9 O 1.21285 * 119.99806 * 349.89594 * 8 6 5 10 10 N 1.34774 * 120.00114 * 169.89109 * 8 6 5 11 11 C 1.47027 * 125.64629 * 354.88303 * 10 8 6 12 12 C 1.54322 * 107.27108 * 180.79119 * 11 10 8 13 13 C 1.55158 * 102.94245 * 22.19352 * 12 11 10 14 14 H 1.08996 * 111.00711 * 82.56717 * 13 12 11 15 15 N 1.46503 * 111.00607 * 206.42262 * 13 12 11 16 16 C 1.36936 * 120.00178 * 273.54778 * 15 13 12 17 17 H 1.07998 * 119.99731 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00026 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99791 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47375 * 90.00249 * 20 18 16 22 22 H 1.48509 * 109.47263 * 210.00076 * 20 18 16 23 23 H 1.48499 * 109.47502 * 329.99822 * 20 18 16 24 24 C 1.47422 * 125.65001 * 174.57243 * 10 8 6 25 25 C 1.47019 * 110.99789 * 236.36452 * 2 1 3 26 26 H 1.09000 * 109.47319 * 183.63769 * 1 2 3 27 27 H 1.09001 * 109.46971 * 303.63601 * 1 2 3 28 28 H 1.08996 * 109.47142 * 63.63436 * 1 2 3 29 29 H 1.09005 * 109.50350 * 297.54450 * 3 2 1 30 30 H 1.08994 * 109.50890 * 57.67108 * 3 2 1 31 31 H 1.08998 * 109.50544 * 176.78221 * 4 3 2 32 32 H 1.09001 * 109.50312 * 296.90955 * 4 3 2 33 33 H 1.08998 * 109.88399 * 300.20746 * 11 10 8 34 34 H 1.09000 * 109.88212 * 61.37673 * 11 10 8 35 35 H 1.08996 * 110.72030 * 140.55748 * 12 11 10 36 36 H 1.08999 * 110.72313 * 263.83037 * 12 11 10 37 37 H 0.97001 * 119.99606 * 93.54879 * 15 13 12 38 38 H 0.97000 * 119.99815 * 180.02562 * 19 18 16 39 39 H 1.09005 * 110.36907 * 274.97925 * 24 10 8 40 40 H 1.08996 * 110.36851 * 37.29836 * 24 10 8 41 41 H 1.09001 * 109.50584 * 62.45710 * 25 2 1 42 42 H 1.09005 * 109.54137 * 302.34740 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 0.0602 5 8 4.0175 0.5573 -1.0404 6 6 3.5249 -0.7850 -1.0710 7 1 3.8385 -1.3091 -0.1682 8 6 4.0741 -1.4951 -2.2815 9 8 4.6610 -0.8681 -3.1379 10 7 3.9131 -2.8267 -2.4123 11 6 3.3200 -3.7210 -1.4072 12 6 3.3633 -5.1516 -1.9842 13 6 4.4919 -5.0643 -3.0454 14 1 5.4725 -5.1771 -2.5832 15 7 4.2953 -6.0577 -4.1041 16 6 4.7820 -7.3283 -3.9497 17 1 5.3112 -7.5979 -3.0477 18 6 4.5953 -8.2697 -4.9525 19 7 3.9508 -7.9409 -6.0520 20 14 5.2599 -10.0027 -4.7422 21 1 4.2291 -10.8531 -4.0946 22 1 5.6022 -10.5666 -6.0727 23 1 6.4770 -9.9664 -3.8921 24 6 4.2967 -3.6270 -3.5895 25 6 1.9959 -0.7603 -1.1428 26 1 -0.3634 -1.0256 0.0652 27 1 -0.3633 0.5693 0.8556 28 1 -0.3633 0.4564 -0.9207 29 1 1.6828 1.8825 -0.9110 30 1 1.6135 1.9092 0.8681 31 1 3.9223 2.3398 0.0028 32 1 3.8386 0.8643 0.9963 33 1 3.8978 -3.6760 -0.4840 34 1 2.2873 -3.4298 -1.2152 35 1 3.6188 -5.8729 -1.2081 36 1 2.4128 -5.4076 -2.4523 37 1 3.8203 -5.8154 -4.9144 38 1 3.8200 -8.5989 -6.7527 39 1 3.5025 -3.6086 -4.3359 40 1 5.2276 -3.2530 -4.0155 41 1 1.6827 -0.2843 -2.0720 42 1 1.6134 -1.7805 -1.1094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968304994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:51 Heat of formation + Delta-G solvation = -45.809612 kcal Electronic energy + Delta-G solvation = -22938.903758 eV Core-core repulsion = 19533.824183 eV Total energy + Delta-G solvation = -3405.079574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54614 -39.06566 -37.24181 -35.90960 -34.20265 -32.19049 -31.17264 -29.60704 -29.16597 -27.70177 -25.36086 -24.44765 -23.53968 -22.72824 -20.93513 -20.12349 -19.34744 -17.43412 -17.30119 -16.64394 -16.36452 -16.01455 -15.49154 -15.22696 -15.11479 -14.49892 -14.40411 -13.91832 -13.58622 -13.51955 -13.26790 -12.75360 -12.69967 -12.59809 -12.41400 -11.95197 -11.89745 -11.77203 -11.55556 -11.17717 -11.02976 -10.87758 -10.71039 -10.33498 -10.08321 -9.97483 -9.79390 -9.60021 -8.98335 -8.83075 -8.46657 -7.07568 -5.84536 -3.15329 2.59176 2.71055 3.39711 3.43356 3.45351 3.47021 3.80369 4.41877 4.51084 4.52710 4.57193 4.71971 4.82978 4.94176 4.99553 5.06129 5.14003 5.15610 5.27862 5.35496 5.38400 5.43137 5.50569 5.53382 5.58003 5.62916 5.72180 5.93868 6.11601 6.19828 6.32864 6.46202 6.48244 6.50800 6.56900 6.83337 6.88597 7.62761 7.63689 8.23956 8.32907 9.44542 9.98121 10.33057 11.37673 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035836 B = 0.003289 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.146248 B = 8510.661780 C = 8841.226796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.013 3.987 4 C 0.062 3.938 5 O -0.357 6.357 6 C 0.084 3.916 7 H 0.091 0.909 8 C 0.534 3.466 9 O -0.522 6.522 10 N -0.611 5.611 11 C 0.097 3.903 12 C -0.154 4.154 13 C 0.172 3.828 14 H 0.064 0.936 15 N -0.715 5.715 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.101 3.899 25 C 0.027 3.973 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.386 0.614 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 16.430 15.097 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.274 6.274 6 C 0.022 3.978 7 H 0.108 0.892 8 C 0.320 3.680 9 O -0.397 6.397 10 N -0.347 5.347 11 C -0.027 4.027 12 C -0.195 4.195 13 C 0.060 3.940 14 H 0.082 0.918 15 N -0.355 5.355 16 C -0.376 4.376 17 H 0.091 0.909 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.022 4.022 25 C -0.101 4.101 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.945 16.534 14.944 23.065 hybrid contribution -0.499 -0.620 -0.611 1.004 sum -6.444 15.913 14.332 22.365 Atomic orbital electron populations 1.22399 0.86318 1.02835 1.00830 1.62227 1.08649 1.13615 1.41981 1.22867 0.96723 0.89875 1.02010 1.22747 0.92110 0.96651 0.89985 1.88125 1.69222 1.21845 1.48244 1.21863 0.92999 0.85314 0.97604 0.89152 1.19596 0.80342 0.80857 0.87223 1.90725 1.41119 1.65155 1.42731 1.48347 1.61197 1.05615 1.19492 1.22247 0.97452 0.91380 0.91574 1.23419 1.02684 0.92735 1.00695 1.21296 0.96045 0.86831 0.89841 0.91780 1.42254 1.67333 1.08048 1.17897 1.19207 1.29557 0.86994 1.01804 0.90936 1.24773 1.00910 0.98527 0.96423 1.69663 1.46116 1.34312 1.07677 0.86164 0.78494 0.84501 0.76839 1.21635 1.21722 1.20655 1.22560 1.00918 0.91424 0.87293 1.22721 0.94061 1.00517 0.92831 0.90791 0.90958 0.95277 0.93619 0.89303 0.87819 0.91967 0.91610 0.91878 0.90564 0.90452 0.77925 0.93337 0.91187 0.90331 0.93164 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.60 60.07 0.58 0.75 16 2 N -0.54 -5.03 4.99 -242.58 -1.21 -6.24 16 3 C 0.01 0.11 5.66 -3.71 -0.02 0.09 16 4 C 0.06 0.57 7.01 37.21 0.26 0.83 16 5 O -0.36 -4.94 10.02 -54.90 -0.55 -5.49 16 6 C 0.08 1.08 2.61 -27.83 -0.07 1.01 16 7 H 0.09 1.03 7.91 -51.93 -0.41 0.62 16 8 C 0.53 8.71 7.17 -10.99 -0.08 8.63 16 9 O -0.52 -10.71 16.77 -14.12 -0.24 -10.95 16 10 N -0.61 -9.36 3.33 -170.52 -0.57 -9.93 16 11 C 0.10 1.22 6.17 -3.06 -0.02 1.20 16 12 C -0.15 -2.40 6.65 -24.90 -0.17 -2.56 16 13 C 0.17 3.24 3.69 -65.78 -0.24 3.00 16 14 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 15 N -0.71 -17.12 5.28 -51.35 -0.27 -17.39 16 16 C -0.24 -6.51 9.98 -15.06 -0.15 -6.66 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 20 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.10 1.77 6.55 -2.53 -0.02 1.76 16 25 C 0.03 0.30 4.84 -3.71 -0.02 0.28 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 34 H 0.06 0.67 5.99 -51.93 -0.31 0.36 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.39 9.88 7.71 -40.82 -0.31 9.57 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 40 H 0.08 1.47 7.99 -51.93 -0.42 1.06 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.97 5.79 -51.93 -0.30 0.67 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -32.40 336.93 -8.88 -41.28 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.78 Total: 5.58 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.04 Total: 7.96 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -1.32 Total: -60.21 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.79 Total: -16.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.40 -8.88 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968304994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.527 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds