Wall clock time and date at job start Tue Mar 31 2020 03:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47014 * 111.00168 * 2 1 4 4 C 1.53100 * 109.25880 * 177.61320 * 3 2 1 5 5 O 1.43012 * 109.26220 * 56.84262 * 4 3 2 6 6 C 1.43014 * 113.73893 * 301.33479 * 5 4 3 7 7 H 1.08999 * 109.54516 * 298.71041 * 6 5 4 8 8 C 1.50703 * 109.50564 * 178.60274 * 6 5 4 9 9 O 1.21285 * 119.99806 * 349.89594 * 8 6 5 10 10 N 1.34774 * 120.00114 * 169.89109 * 8 6 5 11 11 C 1.47027 * 125.64629 * 354.88303 * 10 8 6 12 12 C 1.54322 * 107.27108 * 180.79119 * 11 10 8 13 13 C 1.55158 * 102.94245 * 22.19352 * 12 11 10 14 14 H 1.08996 * 111.00711 * 82.56717 * 13 12 11 15 15 N 1.46503 * 111.00607 * 206.42262 * 13 12 11 16 16 C 1.36936 * 120.00178 * 273.54778 * 15 13 12 17 17 H 1.07998 * 119.99731 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00026 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99791 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47375 * 90.00249 * 20 18 16 22 22 H 1.48509 * 109.47263 * 210.00076 * 20 18 16 23 23 H 1.48499 * 109.47502 * 329.99822 * 20 18 16 24 24 C 1.47422 * 125.65001 * 174.57243 * 10 8 6 25 25 C 1.47019 * 110.99789 * 236.36452 * 2 1 3 26 26 H 1.09000 * 109.47319 * 183.63769 * 1 2 3 27 27 H 1.09001 * 109.46971 * 303.63601 * 1 2 3 28 28 H 1.08996 * 109.47142 * 63.63436 * 1 2 3 29 29 H 1.09005 * 109.50350 * 297.54450 * 3 2 1 30 30 H 1.08994 * 109.50890 * 57.67108 * 3 2 1 31 31 H 1.08998 * 109.50544 * 176.78221 * 4 3 2 32 32 H 1.09001 * 109.50312 * 296.90955 * 4 3 2 33 33 H 1.08998 * 109.88399 * 300.20746 * 11 10 8 34 34 H 1.09000 * 109.88212 * 61.37673 * 11 10 8 35 35 H 1.08996 * 110.72030 * 140.55748 * 12 11 10 36 36 H 1.08999 * 110.72313 * 263.83037 * 12 11 10 37 37 H 0.97001 * 119.99606 * 93.54879 * 15 13 12 38 38 H 0.97000 * 119.99815 * 180.02562 * 19 18 16 39 39 H 1.09005 * 110.36907 * 274.97925 * 24 10 8 40 40 H 1.08996 * 110.36851 * 37.29836 * 24 10 8 41 41 H 1.09001 * 109.50584 * 62.45710 * 25 2 1 42 42 H 1.09005 * 109.54137 * 302.34740 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 0.0602 5 8 4.0175 0.5573 -1.0404 6 6 3.5249 -0.7850 -1.0710 7 1 3.8385 -1.3091 -0.1682 8 6 4.0741 -1.4951 -2.2815 9 8 4.6610 -0.8681 -3.1379 10 7 3.9131 -2.8267 -2.4123 11 6 3.3200 -3.7210 -1.4072 12 6 3.3633 -5.1516 -1.9842 13 6 4.4919 -5.0643 -3.0454 14 1 5.4725 -5.1771 -2.5832 15 7 4.2953 -6.0577 -4.1041 16 6 4.7820 -7.3283 -3.9497 17 1 5.3112 -7.5979 -3.0477 18 6 4.5953 -8.2697 -4.9525 19 7 3.9508 -7.9409 -6.0520 20 14 5.2599 -10.0027 -4.7422 21 1 4.2291 -10.8531 -4.0946 22 1 5.6022 -10.5666 -6.0727 23 1 6.4770 -9.9664 -3.8921 24 6 4.2967 -3.6270 -3.5895 25 6 1.9959 -0.7603 -1.1428 26 1 -0.3634 -1.0256 0.0652 27 1 -0.3633 0.5693 0.8556 28 1 -0.3633 0.4564 -0.9207 29 1 1.6828 1.8825 -0.9110 30 1 1.6135 1.9092 0.8681 31 1 3.9223 2.3398 0.0028 32 1 3.8386 0.8643 0.9963 33 1 3.8978 -3.6760 -0.4840 34 1 2.2873 -3.4298 -1.2152 35 1 3.6188 -5.8729 -1.2081 36 1 2.4128 -5.4076 -2.4523 37 1 3.8203 -5.8154 -4.9144 38 1 3.8200 -8.5989 -6.7527 39 1 3.5025 -3.6086 -4.3359 40 1 5.2276 -3.2530 -4.0155 41 1 1.6827 -0.2843 -2.0720 42 1 1.6134 -1.7805 -1.1094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968304994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:50 Heat of formation + Delta-G solvation = -70.017878 kcal Electronic energy + Delta-G solvation = -22939.953507 eV Core-core repulsion = 19533.824183 eV Total energy + Delta-G solvation = -3406.129324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64135 -40.13347 -38.62364 -36.73974 -35.96128 -33.62242 -32.47814 -31.03597 -30.01658 -29.08409 -26.48933 -25.36501 -25.08281 -23.96561 -21.79876 -21.55339 -20.54567 -19.28394 -18.52176 -17.76409 -17.29663 -17.17222 -16.51501 -16.29770 -16.12912 -15.98622 -15.59247 -15.18818 -14.91938 -14.68680 -14.54220 -14.35000 -13.81068 -13.50474 -13.34124 -13.16310 -13.02559 -12.85594 -12.79640 -12.64960 -12.44437 -12.31810 -12.12159 -11.80630 -11.75495 -11.59232 -10.93625 -10.91918 -10.80027 -9.76323 -9.54329 -9.04643 -7.94444 -5.24700 1.35737 1.49613 1.51861 1.55257 1.60463 2.57126 2.68598 2.86732 3.36173 3.45144 3.60392 3.68483 3.84029 3.88366 3.92612 3.98655 4.15233 4.23446 4.28970 4.30569 4.44682 4.49624 4.52910 4.60290 4.61697 4.74162 4.78134 4.84536 4.89688 4.98746 5.01226 5.13374 5.25317 5.43356 5.55011 5.74718 5.86850 5.98098 6.26265 6.40161 6.96945 7.33215 8.04239 8.28355 9.28946 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035836 B = 0.003289 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.146248 B = 8510.661780 C = 8841.226796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.014 3.986 4 C 0.056 3.944 5 O -0.392 6.392 6 C 0.092 3.908 7 H 0.114 0.886 8 C 0.529 3.471 9 O -0.575 6.575 10 N -0.607 5.607 11 C 0.102 3.898 12 C -0.142 4.142 13 C 0.165 3.835 14 H 0.062 0.938 15 N -0.729 5.729 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.074 4.074 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.269 1.269 24 C 0.108 3.892 25 C 0.034 3.966 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.023 0.977 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 16.748 18.322 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.114 4.114 4 C -0.020 4.020 5 O -0.310 6.310 6 C 0.031 3.969 7 H 0.131 0.869 8 C 0.317 3.683 9 O -0.453 6.453 10 N -0.341 5.341 11 C -0.020 4.020 12 C -0.183 4.183 13 C 0.055 3.945 14 H 0.079 0.921 15 N -0.369 5.369 16 C -0.371 4.371 17 H 0.100 0.900 18 C -0.266 4.266 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.212 1.212 22 H -0.227 1.227 23 H -0.193 1.193 24 C -0.015 4.015 25 C -0.095 4.095 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.713 16.869 18.258 25.749 hybrid contribution -0.250 -0.605 -1.558 1.690 sum -6.964 16.263 16.700 24.329 Atomic orbital electron populations 1.22490 0.84993 1.03630 1.01402 1.62290 1.09791 1.13910 1.40524 1.22932 0.96156 0.89616 1.02711 1.23037 0.92789 0.97022 0.89162 1.88085 1.70170 1.22404 1.50365 1.21812 0.93889 0.85159 0.96027 0.86903 1.20357 0.79379 0.80728 0.87789 1.90695 1.43550 1.66232 1.44865 1.48367 1.60797 1.05753 1.19194 1.22409 0.99640 0.88607 0.91329 1.23208 1.00290 0.95200 0.99573 1.21444 0.97233 0.86176 0.89611 0.92053 1.42404 1.67312 1.08373 1.18808 1.19606 1.28034 0.87880 1.01577 0.90004 1.25572 1.02191 1.02371 0.96496 1.69822 1.48337 1.35240 1.08620 0.85136 0.78234 0.80043 0.76298 1.21179 1.22695 1.19334 1.22263 0.99854 0.91203 0.88215 1.22624 0.92728 1.01366 0.92772 0.90131 0.89118 0.95783 0.94778 0.86521 0.86209 0.90598 0.88628 0.88901 0.89324 0.91499 0.79361 0.94029 0.92006 0.92224 0.95266 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.60 127.69 1.23 1.49 16 2 N -0.54 -8.42 4.99 -921.40 -4.59 -13.02 16 3 C 0.01 0.19 5.66 86.31 0.49 0.68 16 4 C 0.06 0.90 7.01 72.02 0.50 1.40 16 5 O -0.39 -10.39 10.02 -130.17 -1.30 -11.70 16 6 C 0.09 2.21 2.61 29.88 0.08 2.29 16 7 H 0.11 2.18 7.91 -2.39 -0.02 2.16 16 8 C 0.53 17.01 7.17 87.66 0.63 17.64 16 9 O -0.57 -24.22 16.77 15.77 0.26 -23.96 16 10 N -0.61 -17.94 3.33 -811.78 -2.70 -20.64 16 11 C 0.10 2.24 6.17 86.73 0.54 2.78 16 12 C -0.14 -4.12 6.65 31.78 0.21 -3.91 16 13 C 0.17 6.18 3.69 46.38 0.17 6.35 16 14 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 15 N -0.73 -35.35 5.28 -316.37 -1.67 -37.02 16 16 C -0.24 -12.72 9.98 84.03 0.84 -11.88 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 19 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 20 Si 0.97 44.93 29.55 68.60 2.03 46.95 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.11 3.88 6.55 86.86 0.57 4.44 16 25 C 0.03 0.67 4.84 86.31 0.42 1.09 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.65 8.11 -2.39 -0.02 1.63 16 34 H 0.09 1.59 5.99 -2.39 -0.01 1.57 16 35 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.37 19.75 7.71 -92.71 -0.71 19.03 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 39 H 0.06 2.30 8.00 -2.38 -0.02 2.29 16 40 H 0.06 2.34 7.99 -2.39 -0.02 2.32 16 41 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 1.84 5.79 -2.38 -0.01 1.82 16 Total: -1.00 -71.96 336.93 -1.26 -73.23 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.29 Total: 25.54 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 6.14 Total: 18.71 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -8.68 Total: -128.78 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.04 Total: -35.65 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.96 -1.26 -73.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968304994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.210 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds