Wall clock time and date at job start Tue Mar 31 2020 03:07:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46911 * 1
3 3 C 1.47021 * 110.99960 * 2 1
4 4 C 1.53093 * 109.25562 * 182.39090 * 3 2 1
5 5 O 1.43015 * 109.29487 * 303.17556 * 4 3 2
6 6 C 1.43015 * 113.73896 * 58.60143 * 5 4 3
7 7 H 1.08999 * 109.50541 * 61.35603 * 6 5 4
8 8 C 1.50699 * 109.50696 * 181.44623 * 6 5 4
9 9 O 1.21285 * 120.00101 * 4.90916 * 8 6 5
10 10 N 1.34776 * 119.99774 * 184.91321 * 8 6 5
11 11 C 1.46506 * 120.00091 * 179.97438 * 10 8 6
12 12 H 1.09008 * 110.77731 * 323.21603 * 11 10 8
13 13 C 1.55153 * 110.72367 * 199.97702 * 11 10 8
14 14 C 1.55131 * 101.48647 * 205.96729 * 13 11 10
15 15 N 1.47426 * 104.71847 * 37.29562 * 14 13 11
16 16 C 1.36945 * 125.64675 * 155.81671 * 15 14 13
17 17 H 1.07997 * 119.99756 * 179.68946 * 16 15 14
18 18 C 1.38805 * 119.99878 * 359.68852 * 16 15 14
19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15
21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16
22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16
23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16
24 24 C 1.47026 * 108.70569 * 335.55014 * 15 14 13
25 25 C 1.47012 * 110.99774 * 123.63477 * 2 1 3
26 26 H 1.08999 * 109.46771 * 296.36864 * 1 2 3
27 27 H 1.09007 * 109.46614 * 56.36553 * 1 2 3
28 28 H 1.08998 * 109.46892 * 176.36331 * 1 2 3
29 29 H 1.08996 * 109.50642 * 302.32983 * 3 2 1
30 30 H 1.09002 * 109.50379 * 62.45925 * 3 2 1
31 31 H 1.09001 * 109.50655 * 63.08974 * 4 3 2
32 32 H 1.08995 * 109.50396 * 183.17298 * 4 3 2
33 33 H 0.96997 * 120.00394 * 0.02562 * 10 8 6
34 34 H 1.08999 * 111.00098 * 324.21103 * 13 11 10
35 35 H 1.08999 * 111.00564 * 88.05752 * 13 11 10
36 36 H 1.08994 * 110.50226 * 278.45550 * 14 13 11
37 37 H 1.09001 * 110.34274 * 156.05220 * 14 13 11
38 38 H 0.97001 * 119.99885 * 179.97438 * 19 18 16
39 39 H 1.09003 * 109.87851 * 120.70448 * 24 15 14
40 40 H 1.08997 * 109.87950 * 241.87026 * 24 15 14
41 41 H 1.09001 * 109.50694 * 57.67227 * 25 2 1
42 42 H 1.08999 * 109.50507 * 297.54346 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9960 1.3726 0.0000
4 6 3.5250 1.3264 -0.0603
5 8 4.0183 0.5571 1.0397
6 6 3.5250 -0.7849 1.0709
7 1 3.8386 -1.3090 0.1681
8 6 4.0741 -1.4950 2.2814
9 8 4.7423 -0.8864 3.0903
10 7 3.8228 -2.8063 2.4652
11 6 4.3571 -3.4967 3.6417
12 1 5.3511 -3.1246 3.8902
13 6 4.3870 -5.0308 3.4115
14 6 4.3011 -5.5632 4.8660
15 7 3.3830 -4.6351 5.5510
16 6 2.6405 -4.9238 6.6648
17 1 1.9984 -4.1701 7.0961
18 6 2.7131 -6.1852 7.2395
19 7 3.4959 -7.1037 6.7141
20 14 1.7008 -6.5789 8.7593
21 1 2.4868 -6.2517 9.9760
22 1 0.4528 -5.7742 8.7449
23 1 1.3581 -8.0238 8.7651
24 6 3.4014 -3.3461 4.8439
25 6 1.9959 -0.7602 1.1427
26 1 -0.3633 0.4564 0.9208
27 1 -0.3633 0.5693 -0.8557
28 1 -0.3633 -1.0256 -0.0652
29 1 1.6134 1.9092 -0.8681
30 1 1.6829 1.8826 0.9110
31 1 3.8386 0.8644 -0.9964
32 1 3.9222 2.3399 -0.0037
33 1 3.2888 -3.2931 1.8181
34 1 3.5290 -5.3542 2.8221
35 1 5.3207 -5.3370 2.9398
36 1 5.2830 -5.5430 5.3386
37 1 3.8949 -6.5747 4.8760
38 1 3.5469 -7.9851 7.1159
39 1 2.3989 -3.1019 4.4923
40 1 3.7639 -2.5632 5.5100
41 1 1.6134 -1.7803 1.1087
42 1 1.6827 -0.2842 2.0719
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001010436915.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:22
Heat of formation + Delta-G solvation = -37.166749 kcal
Electronic energy + Delta-G solvation = -22974.327126 eV
Core-core repulsion = 19569.622335 eV
Total energy + Delta-G solvation = -3404.704792 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.43063 -38.91516 -37.13400 -35.91686 -34.05004 -32.28421 -31.34606 -29.33138
-28.90840 -27.12727 -25.29421 -24.43172 -24.21254 -21.22857 -20.62164 -20.39497
-19.69656 -17.56966 -16.97316 -16.66212 -16.25396 -15.74972 -15.54991 -15.24102
-14.84705 -14.60017 -14.32536 -14.08555 -13.72006 -13.45985 -12.96253 -12.67599
-12.41666 -12.29522 -12.02925 -11.94070 -11.70309 -11.61479 -11.13772 -11.03895
-10.91429 -10.80407 -10.48966 -10.12142 -9.96405 -9.83882 -9.63812 -9.48350
-8.81565 -8.77647 -8.66528 -6.84652 -5.66446 -3.08164 2.66916 2.86070
3.40359 3.44286 3.45372 3.47028 3.92444 4.46925 4.50871 4.59197
4.63964 4.77162 4.88937 4.98897 5.13960 5.17855 5.23008 5.32928
5.41207 5.44614 5.46550 5.51753 5.53439 5.60553 5.78351 5.81126
6.18837 6.37302 6.47479 6.48245 6.51507 6.52728 6.74218 6.79838
7.01975 7.46605 7.60665 7.67160 7.82708 8.32578 8.38280 9.21056
9.81565 10.45578 11.37606
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.026676 B = 0.003581 C = 0.003370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.382657 B = 7817.696519 C = 8305.876609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.541 5.541
3 C 0.013 3.987
4 C 0.062 3.938
5 O -0.355 6.355
6 C 0.079 3.921
7 H 0.092 0.908
8 C 0.518 3.482
9 O -0.517 6.517
10 N -0.713 5.713
11 C 0.132 3.868
12 H 0.092 0.908
13 C -0.149 4.149
14 C 0.153 3.847
15 N -0.604 5.604
16 C -0.221 4.221
17 H 0.077 0.923
18 C -0.011 4.011
19 N -0.924 5.924
20 Si 0.916 3.084
21 H -0.289 1.289
22 H -0.282 1.282
23 H -0.290 1.290
24 C 0.129 3.871
25 C 0.027 3.973
26 H 0.030 0.970
27 H 0.071 0.929
28 H 0.073 0.927
29 H 0.088 0.912
30 H 0.046 0.954
31 H 0.061 0.939
32 H 0.103 0.897
33 H 0.398 0.602
34 H 0.066 0.934
35 H 0.065 0.935
36 H 0.016 0.984
37 H 0.112 0.888
38 H 0.252 0.748
39 H 0.025 0.975
40 H 0.027 0.973
41 H 0.094 0.906
42 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.443 12.233 -17.730 21.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.266 5.266
3 C -0.115 4.115
4 C -0.015 4.015
5 O -0.273 6.273
6 C 0.017 3.983
7 H 0.109 0.891
8 C 0.301 3.699
9 O -0.391 6.391
10 N -0.365 5.365
11 C 0.028 3.972
12 H 0.110 0.890
13 C -0.188 4.188
14 C 0.027 3.973
15 N -0.330 5.330
16 C -0.349 4.349
17 H 0.095 0.905
18 C -0.207 4.207
19 N -0.572 5.572
20 Si 0.746 3.254
21 H -0.216 1.216
22 H -0.207 1.207
23 H -0.216 1.216
24 C 0.002 3.998
25 C -0.101 4.101
26 H 0.048 0.952
27 H 0.090 0.910
28 H 0.092 0.908
29 H 0.106 0.894
30 H 0.064 0.936
31 H 0.080 0.920
32 H 0.121 0.879
33 H 0.233 0.767
34 H 0.084 0.916
35 H 0.084 0.916
36 H 0.034 0.966
37 H 0.129 0.871
38 H 0.063 0.937
39 H 0.043 0.957
40 H 0.045 0.955
41 H 0.113 0.887
42 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -2.709 12.364 -17.269 21.411
hybrid contribution -1.282 -0.034 1.001 1.627
sum -3.991 12.330 -16.268 20.799
Atomic orbital electron populations
1.22406 0.86320 1.02845 1.00867 1.62242 1.08676 1.13637 1.41996
1.22867 0.96719 0.89894 1.02035 1.22738 0.92092 0.96680 0.89981
1.88143 1.69071 1.21808 1.48240 1.21951 0.92949 0.85620 0.97756
0.89062 1.19998 0.80980 0.82399 0.86527 1.90739 1.38047 1.65632
1.44680 1.45992 1.54852 1.09180 1.26502 1.22126 0.97826 0.92598
0.84628 0.89026 1.23364 1.00859 0.92804 1.01768 1.22006 0.93047
0.97573 0.84628 1.44465 1.50084 1.07509 1.30970 1.19092 1.17722
0.96610 1.01505 0.90494 1.24779 0.99996 0.96225 0.99660 1.69762
1.41652 1.04483 1.41350 0.86054 0.79502 0.77286 0.82551 1.21592
1.20723 1.21631 1.21598 0.96011 0.90079 0.92124 1.22704 0.94043
1.00394 0.92976 0.95187 0.91016 0.90774 0.89351 0.93568 0.92033
0.87860 0.76728 0.91564 0.91648 0.96612 0.87075 0.93691 0.95730
0.95509 0.88737 0.92913
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.18 9.60 60.07 0.58 0.76 16
2 N -0.54 -5.04 4.99 -242.58 -1.21 -6.25 16
3 C 0.01 0.11 5.66 -3.71 -0.02 0.09 16
4 C 0.06 0.57 7.01 37.21 0.26 0.83 16
5 O -0.36 -4.86 10.01 -55.06 -0.55 -5.41 16
6 C 0.08 0.97 3.22 -27.83 -0.09 0.88 16
7 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
8 C 0.52 8.16 7.18 -10.99 -0.08 8.08 16
9 O -0.52 -10.59 16.24 -14.28 -0.23 -10.82 16
10 N -0.71 -10.34 5.09 -52.03 -0.27 -10.60 16
11 C 0.13 2.41 3.23 -66.10 -0.21 2.20 16
12 H 0.09 1.79 7.71 -51.92 -0.40 1.39 16
13 C -0.15 -2.67 6.71 -24.46 -0.16 -2.83 16
14 C 0.15 3.65 5.91 -2.41 -0.01 3.64 16
15 N -0.60 -15.67 3.39 -169.93 -0.58 -16.24 16
16 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16
17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16
18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16
19 N -0.92 -26.73 10.08 55.49 0.56 -26.17 16
20 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16
21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
24 C 0.13 2.85 6.99 -3.06 -0.02 2.83 16
25 C 0.03 0.30 4.90 -3.71 -0.02 0.28 16
26 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16
27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16
33 H 0.40 4.51 8.39 -40.82 -0.34 4.17 16
34 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16
35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.11 2.95 5.86 -51.93 -0.30 2.65 16
38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
39 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16
40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
41 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16
42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
LS Contribution 336.68 15.07 5.07 5.07
Total: -1.00 -33.69 336.68 -9.17 -42.86
By element:
Atomic # 1 Polarization: 7.43 SS G_CDS: -6.91 Total: 0.52 kcal
Atomic # 6 Polarization: 9.97 SS G_CDS: -0.03 Total: 9.94 kcal
Atomic # 7 Polarization: -57.78 SS G_CDS: -1.49 Total: -59.27 kcal
Atomic # 8 Polarization: -15.45 SS G_CDS: -0.78 Total: -16.24 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal
Total LS contribution 5.07 Total: 5.07 kcal
Total: -33.69 -9.17 -42.86 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001010436915.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.691 kcal
(2) G-P(sol) polarization free energy of solvation -33.686 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.995 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds