Wall clock time and date at job start Tue Mar 31 2020 03:07:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46911 * 1
3 3 C 1.47021 * 110.99960 * 2 1
4 4 C 1.53093 * 109.25562 * 182.39090 * 3 2 1
5 5 O 1.43015 * 109.29487 * 303.17556 * 4 3 2
6 6 C 1.43015 * 113.73896 * 58.60143 * 5 4 3
7 7 H 1.08999 * 109.50541 * 61.35603 * 6 5 4
8 8 C 1.50699 * 109.50696 * 181.44623 * 6 5 4
9 9 O 1.21285 * 120.00101 * 4.90916 * 8 6 5
10 10 N 1.34776 * 119.99774 * 184.91321 * 8 6 5
11 11 C 1.46506 * 120.00091 * 179.97438 * 10 8 6
12 12 H 1.09008 * 110.77731 * 323.21603 * 11 10 8
13 13 C 1.55153 * 110.72367 * 199.97702 * 11 10 8
14 14 C 1.55131 * 101.48647 * 205.96729 * 13 11 10
15 15 N 1.47426 * 104.71847 * 37.29562 * 14 13 11
16 16 C 1.36945 * 125.64675 * 155.81671 * 15 14 13
17 17 H 1.07997 * 119.99756 * 179.68946 * 16 15 14
18 18 C 1.38805 * 119.99878 * 359.68852 * 16 15 14
19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15
21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16
22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16
23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16
24 24 C 1.47026 * 108.70569 * 335.55014 * 15 14 13
25 25 C 1.47012 * 110.99774 * 123.63477 * 2 1 3
26 26 H 1.08999 * 109.46771 * 296.36864 * 1 2 3
27 27 H 1.09007 * 109.46614 * 56.36553 * 1 2 3
28 28 H 1.08998 * 109.46892 * 176.36331 * 1 2 3
29 29 H 1.08996 * 109.50642 * 302.32983 * 3 2 1
30 30 H 1.09002 * 109.50379 * 62.45925 * 3 2 1
31 31 H 1.09001 * 109.50655 * 63.08974 * 4 3 2
32 32 H 1.08995 * 109.50396 * 183.17298 * 4 3 2
33 33 H 0.96997 * 120.00394 * 0.02562 * 10 8 6
34 34 H 1.08999 * 111.00098 * 324.21103 * 13 11 10
35 35 H 1.08999 * 111.00564 * 88.05752 * 13 11 10
36 36 H 1.08994 * 110.50226 * 278.45550 * 14 13 11
37 37 H 1.09001 * 110.34274 * 156.05220 * 14 13 11
38 38 H 0.97001 * 119.99885 * 179.97438 * 19 18 16
39 39 H 1.09003 * 109.87851 * 120.70448 * 24 15 14
40 40 H 1.08997 * 109.87950 * 241.87026 * 24 15 14
41 41 H 1.09001 * 109.50694 * 57.67227 * 25 2 1
42 42 H 1.08999 * 109.50507 * 297.54346 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9960 1.3726 0.0000
4 6 3.5250 1.3264 -0.0603
5 8 4.0183 0.5571 1.0397
6 6 3.5250 -0.7849 1.0709
7 1 3.8386 -1.3090 0.1681
8 6 4.0741 -1.4950 2.2814
9 8 4.7423 -0.8864 3.0903
10 7 3.8228 -2.8063 2.4652
11 6 4.3571 -3.4967 3.6417
12 1 5.3511 -3.1246 3.8902
13 6 4.3870 -5.0308 3.4115
14 6 4.3011 -5.5632 4.8660
15 7 3.3830 -4.6351 5.5510
16 6 2.6405 -4.9238 6.6648
17 1 1.9984 -4.1701 7.0961
18 6 2.7131 -6.1852 7.2395
19 7 3.4959 -7.1037 6.7141
20 14 1.7008 -6.5789 8.7593
21 1 2.4868 -6.2517 9.9760
22 1 0.4528 -5.7742 8.7449
23 1 1.3581 -8.0238 8.7651
24 6 3.4014 -3.3461 4.8439
25 6 1.9959 -0.7602 1.1427
26 1 -0.3633 0.4564 0.9208
27 1 -0.3633 0.5693 -0.8557
28 1 -0.3633 -1.0256 -0.0652
29 1 1.6134 1.9092 -0.8681
30 1 1.6829 1.8826 0.9110
31 1 3.8386 0.8644 -0.9964
32 1 3.9222 2.3399 -0.0037
33 1 3.2888 -3.2931 1.8181
34 1 3.5290 -5.3542 2.8221
35 1 5.3207 -5.3370 2.9398
36 1 5.2830 -5.5430 5.3386
37 1 3.8949 -6.5747 4.8760
38 1 3.5469 -7.9851 7.1159
39 1 2.3989 -3.1019 4.4923
40 1 3.7639 -2.5632 5.5100
41 1 1.6134 -1.7803 1.1087
42 1 1.6827 -0.2842 2.0719
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001010436915.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:22
Heat of formation + Delta-G solvation = -62.819745 kcal
Electronic energy + Delta-G solvation = -22975.439524 eV
Core-core repulsion = 19569.622335 eV
Total energy + Delta-G solvation = -3405.817189 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.51080 -40.08156 -38.75963 -36.74546 -35.66465 -33.94291 -32.51296 -30.98077
-29.85972 -28.75597 -26.72800 -25.73900 -25.10263 -22.49978 -22.11143 -21.63166
-21.18395 -19.10654 -18.44160 -17.90634 -17.21347 -16.95787 -16.56615 -16.55628
-16.06783 -15.93147 -15.78576 -15.15688 -15.07043 -14.71346 -14.33893 -14.09929
-13.74173 -13.49425 -13.32378 -13.05329 -12.93646 -12.82134 -12.74678 -12.52727
-12.43166 -12.21122 -12.02139 -11.85311 -11.77962 -11.43535 -10.87487 -10.77909
-10.76095 -10.19380 -9.54223 -8.93214 -7.79851 -5.25363 1.43720 1.46592
1.48494 1.56997 1.73624 2.48264 2.69147 2.99625 3.30173 3.56248
3.64199 3.74023 3.82944 3.89414 3.96483 4.02654 4.13740 4.22590
4.30216 4.46723 4.56059 4.58177 4.61158 4.64888 4.73196 4.78932
4.87979 4.91194 4.97298 5.00660 5.03628 5.42835 5.47483 5.59940
5.75841 5.76938 5.86534 5.99986 6.28982 6.50844 7.08531 7.16344
7.73741 8.36762 9.21583
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.026676 B = 0.003581 C = 0.003370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.382657 B = 7817.696519 C = 8305.876609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 N -0.540 5.540
3 C 0.013 3.987
4 C 0.057 3.943
5 O -0.391 6.391
6 C 0.088 3.912
7 H 0.121 0.879
8 C 0.517 3.483
9 O -0.570 6.570
10 N -0.695 5.695
11 C 0.149 3.851
12 H 0.078 0.922
13 C -0.125 4.125
14 C 0.151 3.849
15 N -0.623 5.623
16 C -0.246 4.246
17 H 0.075 0.925
18 C -0.060 4.060
19 N -0.945 5.945
20 Si 0.981 3.019
21 H -0.289 1.289
22 H -0.271 1.271
23 H -0.287 1.287
24 C 0.129 3.871
25 C 0.032 3.968
26 H 0.022 0.978
27 H 0.089 0.911
28 H 0.080 0.920
29 H 0.115 0.885
30 H 0.032 0.968
31 H 0.077 0.923
32 H 0.118 0.882
33 H 0.419 0.581
34 H 0.088 0.912
35 H 0.096 0.904
36 H -0.012 1.012
37 H 0.085 0.915
38 H 0.250 0.750
39 H 0.031 0.969
40 H 0.002 0.998
41 H 0.111 0.889
42 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.594 12.482 -20.058 24.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 N -0.265 5.265
3 C -0.115 4.115
4 C -0.019 4.019
5 O -0.310 6.310
6 C 0.026 3.974
7 H 0.138 0.862
8 C 0.302 3.698
9 O -0.448 6.448
10 N -0.348 5.348
11 C 0.043 3.957
12 H 0.096 0.904
13 C -0.163 4.163
14 C 0.026 3.974
15 N -0.350 5.350
16 C -0.375 4.375
17 H 0.092 0.908
18 C -0.253 4.253
19 N -0.594 5.594
20 Si 0.809 3.191
21 H -0.216 1.216
22 H -0.196 1.196
23 H -0.213 1.213
24 C 0.002 3.998
25 C -0.097 4.097
26 H 0.040 0.960
27 H 0.108 0.892
28 H 0.099 0.901
29 H 0.134 0.866
30 H 0.050 0.950
31 H 0.095 0.905
32 H 0.136 0.864
33 H 0.257 0.743
34 H 0.107 0.893
35 H 0.114 0.886
36 H 0.006 0.994
37 H 0.103 0.897
38 H 0.060 0.940
39 H 0.049 0.951
40 H 0.020 0.980
41 H 0.129 0.871
42 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -3.890 12.617 -19.655 23.678
hybrid contribution -0.919 -0.044 1.724 1.954
sum -4.810 12.574 -17.932 22.423
Atomic orbital electron populations
1.22491 0.85181 1.03608 1.01291 1.62306 1.09660 1.13878 1.40640
1.22933 0.96335 0.89670 1.02568 1.23007 0.92577 0.97048 0.89281
1.88099 1.70001 1.22531 1.50325 1.21908 0.93581 0.85385 0.96483
0.86202 1.20713 0.79809 0.82278 0.86954 1.90718 1.40502 1.66766
1.46809 1.45716 1.54567 1.09046 1.25518 1.21681 0.96207 0.93239
0.84536 0.90399 1.23167 1.03490 0.91656 0.98025 1.21857 0.90974
0.96500 0.88091 1.44746 1.50010 1.09233 1.31014 1.19411 1.18317
0.96952 1.02784 0.90759 1.25600 1.01188 0.96043 1.02501 1.69995
1.42590 1.04507 1.42326 0.85044 0.78275 0.77019 0.78748 1.21616
1.19572 1.21327 1.21672 0.97163 0.87946 0.93022 1.22652 0.93008
1.01438 0.92622 0.95964 0.89186 0.90104 0.86649 0.94987 0.90486
0.86392 0.74311 0.89334 0.88579 0.99357 0.89683 0.94034 0.95133
0.98009 0.87067 0.95420
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.60 127.69 1.23 1.50 16
2 N -0.54 -8.64 4.99 -921.40 -4.59 -13.23 16
3 C 0.01 0.19 5.66 86.31 0.49 0.68 16
4 C 0.06 0.92 7.01 72.01 0.50 1.43 16
5 O -0.39 -10.27 10.01 -130.02 -1.30 -11.57 16
6 C 0.09 2.00 3.22 29.88 0.10 2.10 16
7 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16
8 C 0.52 15.84 7.18 87.66 0.63 16.46 16
9 O -0.57 -23.73 16.24 15.92 0.26 -23.47 16
10 N -0.69 -18.91 5.09 -436.90 -2.23 -21.14 16
11 C 0.15 5.33 3.23 46.18 0.15 5.48 16
12 H 0.08 3.06 7.71 -2.38 -0.02 3.04 16
13 C -0.12 -4.25 6.71 32.06 0.22 -4.04 16
14 C 0.15 7.32 5.91 86.93 0.51 7.83 16
15 N -0.62 -33.02 3.39 -691.55 -2.35 -35.37 16
16 C -0.25 -14.15 10.27 84.03 0.86 -13.29 16
17 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16
18 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16
19 N -0.94 -55.65 10.08 21.65 0.22 -55.43 16
20 Si 0.98 45.84 29.55 68.60 2.03 47.87 16
21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16
22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16
24 C 0.13 5.78 6.99 86.73 0.61 6.38 16
25 C 0.03 0.62 4.90 86.31 0.42 1.05 16
26 H 0.02 0.31 8.14 -2.39 -0.02 0.30 16
27 H 0.09 0.81 8.14 -2.38 -0.02 0.80 16
28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
29 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16
30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16
33 H 0.42 8.11 8.39 -92.71 -0.78 7.33 16
34 H 0.09 2.67 8.00 -2.39 -0.02 2.65 16
35 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16
36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
37 H 0.09 4.61 5.86 -2.39 -0.01 4.59 16
38 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
39 H 0.03 1.33 8.03 -2.39 -0.02 1.31 16
40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16
41 H 0.11 1.77 8.01 -2.39 -0.02 1.75 16
42 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16
Total: -1.00 -75.61 336.68 -1.56 -77.16
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: 0.23 Total: 12.57 kcal
Atomic # 6 Polarization: 16.43 SS G_CDS: 6.18 Total: 22.61 kcal
Atomic # 7 Polarization: -116.22 SS G_CDS: -8.95 Total: -125.17 kcal
Atomic # 8 Polarization: -34.00 SS G_CDS: -1.04 Total: -35.04 kcal
Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -75.61 -1.56 -77.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001010436915.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.342 kcal
(2) G-P(sol) polarization free energy of solvation -75.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.820 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds