Wall clock time and date at job start Tue Mar 31 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47015 * 111.00332 * 2 1 4 4 C 1.53089 * 109.26015 * 182.39002 * 3 2 1 5 5 O 1.43013 * 109.26249 * 303.15304 * 4 3 2 6 6 C 1.43020 * 113.73701 * 58.67382 * 5 4 3 7 7 C 1.47022 * 110.99979 * 123.63666 * 2 1 3 8 8 H 1.08997 * 109.50403 * 297.58295 * 7 2 1 9 9 C 1.50700 * 109.50641 * 57.67727 * 7 2 1 10 10 O 1.21280 * 120.00437 * 27.65202 * 9 7 2 11 11 N 1.34781 * 119.99558 * 207.66348 * 9 7 2 12 12 C 1.46496 * 119.99872 * 179.97438 * 11 9 7 13 13 H 1.09004 * 110.64423 * 328.14324 * 12 11 9 14 14 C 1.55154 * 110.72088 * 204.99530 * 12 11 9 15 15 C 1.54898 * 101.58330 * 276.96192 * 14 12 11 16 16 N 1.47428 * 104.83412 * 322.98751 * 15 14 12 17 17 C 1.36938 * 125.64925 * 204.08890 * 16 15 14 18 18 H 1.07999 * 119.99681 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00108 * 0.03217 * 17 16 15 20 20 N 1.31620 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00083 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47217 * 59.99414 * 21 19 17 23 23 H 1.48497 * 109.47386 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47218 * 299.99938 * 21 19 17 25 25 C 1.47019 * 108.69847 * 24.13079 * 16 15 14 26 26 H 1.08997 * 109.46919 * 290.24932 * 1 2 3 27 27 H 1.08993 * 109.47131 * 50.25172 * 1 2 3 28 28 H 1.09007 * 109.46992 * 170.25623 * 1 2 3 29 29 H 1.08996 * 109.50705 * 302.33134 * 3 2 1 30 30 H 1.09006 * 109.50143 * 62.45579 * 3 2 1 31 31 H 1.09003 * 109.50842 * 63.09178 * 4 3 2 32 32 H 1.09002 * 109.50947 * 183.17404 * 4 3 2 33 33 H 1.08998 * 109.50589 * 181.39752 * 6 5 4 34 34 H 1.08993 * 109.51042 * 61.26167 * 6 5 4 35 35 H 0.97001 * 120.00169 * 359.97438 * 11 9 7 36 36 H 1.09007 * 111.00374 * 158.88731 * 14 12 11 37 37 H 1.08998 * 111.03663 * 35.05771 * 14 12 11 38 38 H 1.08995 * 110.36859 * 81.83166 * 15 14 12 39 39 H 1.09004 * 110.36889 * 204.15288 * 15 14 12 40 40 H 0.97004 * 119.99439 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.88306 * 239.52059 * 25 16 15 42 42 H 1.09006 * 109.88203 * 118.35928 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0175 0.5573 1.0403 6 6 3.5250 -0.7850 1.0709 7 6 1.9958 -0.7603 1.1428 8 1 1.6821 -0.2847 2.0720 9 6 1.4671 -2.1707 1.0956 10 8 1.1695 -2.6716 0.0319 11 7 1.3247 -2.8754 2.2356 12 6 0.8102 -4.2463 2.1899 13 1 0.1030 -4.3642 1.3687 14 6 0.1516 -4.6308 3.5410 15 6 1.3839 -5.0550 4.3781 16 7 2.2713 -5.7420 3.4220 17 6 3.2240 -6.6716 3.7435 18 1 3.8261 -7.1188 2.9664 19 6 3.4160 -7.0392 5.0683 20 7 2.6825 -6.4939 6.0154 21 14 4.7151 -8.3078 5.5068 22 1 6.0491 -7.8206 5.0727 23 1 4.7211 -8.5226 6.9761 24 1 4.4084 -9.5882 4.8200 25 6 1.9645 -5.2630 2.0663 26 1 -0.3633 0.3557 0.9641 27 1 -0.3633 0.6571 -0.7901 28 1 -0.3633 -1.0129 -0.1739 29 1 1.6134 1.9092 -0.8681 30 1 1.6827 1.8825 0.9111 31 1 3.8385 0.8644 -0.9964 32 1 3.9222 2.3398 -0.0036 33 1 3.9222 -1.2986 1.9464 34 1 3.8385 -1.3084 0.1677 35 1 1.5629 -2.4749 3.0864 36 1 -0.5407 -5.4634 3.4153 37 1 -0.3495 -3.7733 3.9901 38 1 1.8803 -4.1782 4.7937 39 1 1.0851 -5.7361 5.1750 40 1 2.8164 -6.7510 6.9411 41 1 1.6565 -6.0992 1.4385 42 1 2.8414 -4.7780 1.6372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010687264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:36 Heat of formation + Delta-G solvation = -35.653140 kcal Electronic energy + Delta-G solvation = -23390.088056 eV Core-core repulsion = 19985.448899 eV Total energy + Delta-G solvation = -3404.639157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51729 -38.87154 -37.22092 -35.67662 -33.85143 -32.16887 -31.27413 -29.28907 -28.86484 -27.27107 -25.02025 -24.40240 -24.28703 -21.68463 -20.24066 -20.03179 -19.83362 -17.49247 -16.83994 -16.62787 -16.50564 -15.83292 -15.31780 -15.08366 -14.67375 -14.40759 -14.26845 -13.99084 -13.75098 -13.40818 -13.00312 -12.65707 -12.52844 -12.30979 -11.99185 -11.84811 -11.64285 -11.41954 -11.09457 -10.89887 -10.88625 -10.78935 -10.41790 -10.16491 -10.03989 -9.90710 -9.61328 -9.45034 -8.78662 -8.64223 -8.57053 -6.86281 -5.68062 -3.09145 2.69609 3.12416 3.40242 3.44506 3.45665 3.54781 3.83615 4.48001 4.60110 4.71044 4.72557 4.84840 4.97459 5.01874 5.28067 5.32962 5.33696 5.35979 5.42826 5.47473 5.49522 5.58299 5.72382 5.73695 5.83322 5.84626 6.23223 6.32769 6.46217 6.51569 6.57618 6.69603 6.70216 6.87668 7.01997 7.39785 7.59932 7.74422 7.81209 8.32111 8.42245 9.19895 9.80582 10.44736 11.36148 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.004057 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.604803 B = 6900.701257 C = 7493.316687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.518 5.518 3 C 0.018 3.982 4 C 0.059 3.941 5 O -0.378 6.378 6 C 0.076 3.924 7 C 0.033 3.967 8 H 0.068 0.932 9 C 0.519 3.481 10 O -0.524 6.524 11 N -0.709 5.709 12 C 0.131 3.869 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.151 3.849 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.924 5.924 21 Si 0.915 3.085 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.127 3.873 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.010 0.990 39 H 0.108 0.892 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 15.885 -8.586 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.244 5.244 3 C -0.110 4.110 4 C -0.018 4.018 5 O -0.296 6.296 6 C -0.002 4.002 7 C -0.080 4.080 8 H 0.086 0.914 9 C 0.303 3.697 10 O -0.399 6.399 11 N -0.360 5.360 12 C 0.026 3.974 13 H 0.107 0.893 14 C -0.192 4.192 15 C 0.026 3.974 16 N -0.330 5.330 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.000 4.000 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.028 0.972 39 H 0.126 0.874 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.917 15.239 -9.469 18.364 hybrid contribution 0.298 -0.075 1.222 1.260 sum -3.620 15.164 -8.246 17.637 Atomic orbital electron populations 1.22498 0.86239 1.03949 1.00067 1.61962 1.08811 1.12684 1.40963 1.22860 0.96665 0.89512 1.01927 1.22718 0.92115 0.96554 0.90380 1.88027 1.69522 1.23672 1.48418 1.22578 0.89407 0.84172 1.03997 1.22340 0.98057 0.93485 0.94073 0.91402 1.20044 0.78488 0.86812 0.84351 1.90688 1.49184 1.70803 1.29253 1.46049 1.65682 1.15304 1.08964 1.22006 0.95991 0.80119 0.99261 0.89260 1.23345 1.00085 1.00498 0.95319 1.21950 0.86285 0.96191 0.92935 1.44504 1.41337 1.46841 1.00272 1.19048 1.09980 1.13692 0.92289 0.90549 1.24762 0.99954 1.00348 0.95523 1.69768 1.41914 1.45907 0.99708 0.86143 0.81058 0.81119 0.77130 1.21228 1.21574 1.21147 1.21685 0.94800 0.94231 0.89238 0.95684 0.91093 0.89860 0.89186 0.93833 0.91935 0.88230 0.87387 0.91226 0.76522 0.90604 0.91805 0.97160 0.87388 0.93704 0.95065 0.95646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.12 60.06 0.55 0.77 16 2 N -0.52 -6.31 4.53 -235.97 -1.07 -7.38 16 3 C 0.02 0.17 5.65 -3.72 -0.02 0.15 16 4 C 0.06 0.56 7.01 37.20 0.26 0.83 16 5 O -0.38 -4.68 10.83 -35.23 -0.38 -5.06 16 6 C 0.08 0.97 6.27 37.21 0.23 1.21 16 7 C 0.03 0.42 2.36 -68.74 -0.16 0.26 16 8 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 9 C 0.52 8.03 6.09 -10.98 -0.07 7.97 16 10 O -0.52 -9.80 14.98 5.56 0.08 -9.72 16 11 N -0.71 -10.94 5.10 -52.03 -0.27 -11.21 16 12 C 0.13 2.31 3.32 -66.10 -0.22 2.09 16 13 H 0.09 1.56 7.55 -51.93 -0.39 1.17 16 14 C -0.15 -2.72 6.66 -24.59 -0.16 -2.89 16 15 C 0.15 3.47 5.85 -2.53 -0.01 3.46 16 16 N -0.60 -15.16 3.39 -170.08 -0.58 -15.73 16 17 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.33 10.09 55.49 0.56 -25.77 16 21 Si 0.92 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.13 2.73 6.99 -3.07 -0.02 2.71 16 26 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 27 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 28 H 0.08 1.11 6.39 -51.92 -0.33 0.78 16 29 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 5.65 8.64 -40.82 -0.35 5.30 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.11 2.83 5.88 -51.93 -0.31 2.53 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -31.66 333.20 -8.36 -40.03 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.83 Total: 3.04 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.12 Total: 9.87 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -1.35 Total: -60.09 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.30 Total: -14.78 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.66 -8.36 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010687264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.372 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds