Wall clock time and date at job start Tue Mar 31 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47015 * 111.00332 * 2 1 4 4 C 1.53089 * 109.26015 * 182.39002 * 3 2 1 5 5 O 1.43013 * 109.26249 * 303.15304 * 4 3 2 6 6 C 1.43020 * 113.73701 * 58.67382 * 5 4 3 7 7 C 1.47022 * 110.99979 * 123.63666 * 2 1 3 8 8 H 1.08997 * 109.50403 * 297.58295 * 7 2 1 9 9 C 1.50700 * 109.50641 * 57.67727 * 7 2 1 10 10 O 1.21280 * 120.00437 * 27.65202 * 9 7 2 11 11 N 1.34781 * 119.99558 * 207.66348 * 9 7 2 12 12 C 1.46496 * 119.99872 * 179.97438 * 11 9 7 13 13 H 1.09004 * 110.64423 * 328.14324 * 12 11 9 14 14 C 1.55154 * 110.72088 * 204.99530 * 12 11 9 15 15 C 1.54898 * 101.58330 * 276.96192 * 14 12 11 16 16 N 1.47428 * 104.83412 * 322.98751 * 15 14 12 17 17 C 1.36938 * 125.64925 * 204.08890 * 16 15 14 18 18 H 1.07999 * 119.99681 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00108 * 0.03217 * 17 16 15 20 20 N 1.31620 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00083 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47217 * 59.99414 * 21 19 17 23 23 H 1.48497 * 109.47386 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47218 * 299.99938 * 21 19 17 25 25 C 1.47019 * 108.69847 * 24.13079 * 16 15 14 26 26 H 1.08997 * 109.46919 * 290.24932 * 1 2 3 27 27 H 1.08993 * 109.47131 * 50.25172 * 1 2 3 28 28 H 1.09007 * 109.46992 * 170.25623 * 1 2 3 29 29 H 1.08996 * 109.50705 * 302.33134 * 3 2 1 30 30 H 1.09006 * 109.50143 * 62.45579 * 3 2 1 31 31 H 1.09003 * 109.50842 * 63.09178 * 4 3 2 32 32 H 1.09002 * 109.50947 * 183.17404 * 4 3 2 33 33 H 1.08998 * 109.50589 * 181.39752 * 6 5 4 34 34 H 1.08993 * 109.51042 * 61.26167 * 6 5 4 35 35 H 0.97001 * 120.00169 * 359.97438 * 11 9 7 36 36 H 1.09007 * 111.00374 * 158.88731 * 14 12 11 37 37 H 1.08998 * 111.03663 * 35.05771 * 14 12 11 38 38 H 1.08995 * 110.36859 * 81.83166 * 15 14 12 39 39 H 1.09004 * 110.36889 * 204.15288 * 15 14 12 40 40 H 0.97004 * 119.99439 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.88306 * 239.52059 * 25 16 15 42 42 H 1.09006 * 109.88203 * 118.35928 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0175 0.5573 1.0403 6 6 3.5250 -0.7850 1.0709 7 6 1.9958 -0.7603 1.1428 8 1 1.6821 -0.2847 2.0720 9 6 1.4671 -2.1707 1.0956 10 8 1.1695 -2.6716 0.0319 11 7 1.3247 -2.8754 2.2356 12 6 0.8102 -4.2463 2.1899 13 1 0.1030 -4.3642 1.3687 14 6 0.1516 -4.6308 3.5410 15 6 1.3839 -5.0550 4.3781 16 7 2.2713 -5.7420 3.4220 17 6 3.2240 -6.6716 3.7435 18 1 3.8261 -7.1188 2.9664 19 6 3.4160 -7.0392 5.0683 20 7 2.6825 -6.4939 6.0154 21 14 4.7151 -8.3078 5.5068 22 1 6.0491 -7.8206 5.0727 23 1 4.7211 -8.5226 6.9761 24 1 4.4084 -9.5882 4.8200 25 6 1.9645 -5.2630 2.0663 26 1 -0.3633 0.3557 0.9641 27 1 -0.3633 0.6571 -0.7901 28 1 -0.3633 -1.0129 -0.1739 29 1 1.6134 1.9092 -0.8681 30 1 1.6827 1.8825 0.9111 31 1 3.8385 0.8644 -0.9964 32 1 3.9222 2.3398 -0.0036 33 1 3.9222 -1.2986 1.9464 34 1 3.8385 -1.3084 0.1677 35 1 1.5629 -2.4749 3.0864 36 1 -0.5407 -5.4634 3.4153 37 1 -0.3495 -3.7733 3.9901 38 1 1.8803 -4.1782 4.7937 39 1 1.0851 -5.7361 5.1750 40 1 2.8164 -6.7510 6.9411 41 1 1.6565 -6.0992 1.4385 42 1 2.8414 -4.7780 1.6372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010687264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:35 Heat of formation + Delta-G solvation = -59.890556 kcal Electronic energy + Delta-G solvation = -23391.139069 eV Core-core repulsion = 19985.448899 eV Total energy + Delta-G solvation = -3405.690170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62882 -40.06706 -38.74870 -36.62914 -35.48544 -33.77511 -32.46282 -30.94471 -29.86092 -28.92284 -26.59850 -25.69076 -25.24770 -22.78111 -22.06203 -21.34835 -21.09102 -19.00685 -18.45375 -17.65430 -17.56443 -16.98263 -16.70859 -16.27277 -16.02756 -15.77676 -15.46894 -15.42871 -14.95376 -14.81320 -14.37350 -14.01956 -13.78657 -13.41675 -13.41050 -13.22821 -12.98656 -12.77484 -12.71707 -12.36679 -12.27208 -12.12010 -12.04855 -11.83090 -11.74245 -11.45425 -11.06062 -10.74321 -10.62814 -10.11681 -9.45800 -8.89033 -7.77806 -5.21404 1.46843 1.48166 1.49881 1.56411 1.96556 2.49882 2.65340 2.91175 3.32526 3.59390 3.65827 3.73939 3.83323 3.87865 3.92083 4.06895 4.18376 4.24636 4.29752 4.47560 4.48280 4.59022 4.62600 4.64907 4.72354 4.81586 4.89887 4.92157 4.96452 5.01151 5.03748 5.44391 5.53635 5.62741 5.70559 5.80924 5.89686 6.00784 6.31908 6.52179 7.11632 7.18200 7.77717 8.40647 9.23408 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.004057 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.604803 B = 6900.701257 C = 7493.316687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.021 3.979 4 C 0.053 3.947 5 O -0.390 6.390 6 C 0.080 3.920 7 C 0.041 3.959 8 H 0.084 0.916 9 C 0.522 3.478 10 O -0.557 6.557 11 N -0.703 5.703 12 C 0.146 3.854 13 H 0.098 0.902 14 C -0.133 4.133 15 C 0.154 3.846 16 N -0.622 5.622 17 C -0.244 4.244 18 H 0.073 0.927 19 C -0.059 4.059 20 N -0.944 5.944 21 Si 0.977 3.023 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.126 3.874 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.081 0.919 37 H 0.097 0.903 38 H -0.002 1.002 39 H 0.075 0.925 40 H 0.248 0.752 41 H 0.026 0.974 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 17.536 -8.923 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.107 4.107 4 C -0.024 4.024 5 O -0.308 6.308 6 C 0.002 3.998 7 C -0.071 4.071 8 H 0.102 0.898 9 C 0.308 3.692 10 O -0.434 6.434 11 N -0.355 5.355 12 C 0.041 3.959 13 H 0.116 0.884 14 C -0.171 4.171 15 C 0.029 3.971 16 N -0.348 5.348 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.252 4.252 20 N -0.593 5.593 21 Si 0.806 3.194 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.001 4.001 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.016 0.984 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -4.324 16.922 -9.815 20.034 hybrid contribution 0.447 -0.551 1.263 1.449 sum -3.876 16.371 -8.552 18.872 Atomic orbital electron populations 1.22454 0.85686 1.02863 1.01409 1.61958 1.09502 1.14331 1.40681 1.22948 0.96271 0.88092 1.03342 1.22985 0.92552 0.97484 0.89358 1.88016 1.69871 1.23285 1.49617 1.22459 0.89485 0.84682 1.03203 1.22240 0.97779 0.91774 0.95334 0.89798 1.20510 0.77431 0.87698 0.83544 1.90673 1.50569 1.71768 1.30418 1.45968 1.65529 1.14383 1.09619 1.21730 0.94418 0.80335 0.99437 0.88420 1.23173 0.97928 1.01910 0.94124 1.21772 0.87893 0.94698 0.92734 1.44755 1.41293 1.46702 1.02060 1.19354 1.10799 1.14509 0.92594 0.90893 1.25524 1.01972 1.02242 0.95439 1.70004 1.42920 1.46818 0.99574 0.85175 0.78754 0.78950 0.76564 1.20744 1.21607 1.20527 1.21779 0.95769 0.95017 0.87507 0.94602 0.89125 0.92474 0.86974 0.93024 0.92360 0.85384 0.87513 0.92806 0.75539 0.90053 0.88464 0.98364 0.90672 0.94203 0.95567 0.96894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.12 127.69 1.16 1.64 16 2 N -0.54 -12.06 4.53 -900.47 -4.08 -16.14 16 3 C 0.02 0.33 5.65 86.31 0.49 0.82 16 4 C 0.05 0.88 7.01 72.01 0.50 1.38 16 5 O -0.39 -9.02 10.83 -148.98 -1.61 -10.64 16 6 C 0.08 1.98 6.27 72.02 0.45 2.43 16 7 C 0.04 0.99 2.36 44.18 0.10 1.10 16 8 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 9 C 0.52 15.70 6.09 87.66 0.53 16.24 16 10 O -0.56 -20.62 14.98 -3.03 -0.05 -20.67 16 11 N -0.70 -20.90 5.10 -436.92 -2.23 -23.13 16 12 C 0.15 5.02 3.32 46.18 0.15 5.17 16 13 H 0.10 3.28 7.55 -2.39 -0.02 3.26 16 14 C -0.13 -4.50 6.66 31.98 0.21 -4.29 16 15 C 0.15 7.09 5.85 86.85 0.51 7.60 16 16 N -0.62 -31.67 3.39 -692.00 -2.35 -34.02 16 17 C -0.24 -13.72 10.27 84.03 0.86 -12.85 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 20 N -0.94 -54.57 10.09 21.65 0.22 -54.35 16 21 Si 0.98 45.39 29.55 68.60 2.03 47.42 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C 0.13 5.43 6.99 86.73 0.61 6.04 16 26 H 0.04 0.63 8.12 -2.39 -0.02 0.61 16 27 H 0.09 1.42 8.04 -2.39 -0.02 1.41 16 28 H 0.06 1.46 6.39 -2.38 -0.02 1.44 16 29 H 0.11 1.29 8.09 -2.39 -0.02 1.27 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.41 10.92 8.64 -92.71 -0.80 10.12 16 36 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.08 4.01 5.88 -2.38 -0.01 4.00 16 40 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.01 0.59 8.05 -2.38 -0.02 0.57 16 Total: -1.00 -68.72 333.20 -1.81 -70.52 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.21 Total: 18.55 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 6.06 Total: 22.45 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -8.44 Total: -127.63 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.66 Total: -31.30 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.72 -1.81 -70.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010687264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.631 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds