Wall clock time and date at job start Tue Mar 31 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47014 * 110.99990 * 2 1 4 4 C 1.53101 * 109.25548 * 182.39754 * 3 2 1 5 5 O 1.43017 * 109.25654 * 303.14495 * 4 3 2 6 6 C 1.43013 * 113.73900 * 58.67133 * 5 4 3 7 7 C 1.47012 * 111.00223 * 123.63170 * 2 1 3 8 8 H 1.09007 * 109.54508 * 297.56653 * 7 2 1 9 9 C 1.50708 * 109.50603 * 57.66873 * 7 2 1 10 10 O 1.21284 * 119.99359 * 28.58245 * 9 7 2 11 11 N 1.34767 * 120.00198 * 208.57891 * 9 7 2 12 12 C 1.47430 * 125.64997 * 355.03807 * 11 9 7 13 13 C 1.54910 * 104.82923 * 204.09137 * 12 11 9 14 14 C 1.55155 * 101.58486 * 322.99016 * 13 12 11 15 15 H 1.09002 * 110.71966 * 277.13749 * 14 13 12 16 16 N 1.46496 * 110.72039 * 153.87083 * 14 13 12 17 17 C 1.36936 * 120.00307 * 91.47657 * 16 14 13 18 18 H 1.07999 * 120.00178 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99793 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00300 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47311 * 89.99598 * 21 19 17 23 23 H 1.48500 * 109.47496 * 209.99883 * 21 19 17 24 24 H 1.48501 * 109.47308 * 330.00055 * 21 19 17 25 25 C 1.47025 * 125.64871 * 174.99589 * 11 9 7 26 26 H 1.09003 * 109.46918 * 300.79139 * 1 2 3 27 27 H 1.09001 * 109.47210 * 60.78653 * 1 2 3 28 28 H 1.08997 * 109.47279 * 180.79089 * 1 2 3 29 29 H 1.08996 * 109.51044 * 62.45685 * 3 2 1 30 30 H 1.08997 * 109.53913 * 302.34428 * 3 2 1 31 31 H 1.09005 * 109.50636 * 183.21788 * 4 3 2 32 32 H 1.08997 * 109.54759 * 63.10327 * 4 3 2 33 33 H 1.08995 * 109.50785 * 181.39048 * 6 5 4 34 34 H 1.09003 * 109.50231 * 61.26726 * 6 5 4 35 35 H 1.09001 * 110.36308 * 322.93147 * 12 11 9 36 36 H 1.08998 * 110.36550 * 85.14116 * 12 11 9 37 37 H 1.09003 * 110.99702 * 204.91337 * 13 12 11 38 38 H 1.08996 * 111.00534 * 81.06871 * 13 12 11 39 39 H 0.96998 * 119.99613 * 271.47669 * 16 14 13 40 40 H 0.96999 * 119.99784 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.88405 * 59.55936 * 25 11 9 42 42 H 1.09002 * 109.88045 * 298.39191 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3263 -0.0605 5 8 4.0175 0.5574 1.0402 6 6 3.5249 -0.7849 1.0710 7 6 1.9959 -0.7601 1.1427 8 1 1.6827 -0.2849 2.0724 9 6 1.4669 -2.1706 1.0958 10 8 1.1852 -2.6773 0.0305 11 7 1.3071 -2.8687 2.2374 12 6 1.7040 -2.4170 3.5835 13 6 1.8983 -3.7204 4.3978 14 6 0.7602 -4.6121 3.8349 15 1 -0.1852 -4.3887 4.3294 16 7 1.0967 -6.0311 3.9738 17 6 0.7128 -6.7194 5.0937 18 1 0.1623 -6.2160 5.8747 19 6 1.0321 -8.0638 5.2255 20 7 1.7034 -8.6772 4.2739 21 14 0.5090 -9.0026 6.7534 22 1 -0.8333 -9.5984 6.5331 23 1 1.4902 -10.0820 7.0314 24 1 0.4541 -8.0735 7.9106 25 6 0.7073 -4.2066 2.3469 26 1 -0.3633 0.5261 0.8828 27 1 -0.3634 0.5016 -0.8970 28 1 -0.3634 -1.0275 0.0142 29 1 1.6827 1.8826 0.9109 30 1 1.6134 1.9098 -0.8678 31 1 3.9222 2.3398 -0.0031 32 1 3.8391 0.8647 -0.9965 33 1 3.9222 -1.2984 1.9465 34 1 3.8385 -1.3084 0.1678 35 1 2.6378 -1.8567 3.5356 36 1 0.9176 -1.8052 4.0255 37 1 1.7616 -3.5390 5.4639 38 1 2.8749 -4.1624 4.2005 39 1 1.5914 -6.4831 3.2725 40 1 1.9268 -9.6166 4.3662 41 1 1.2763 -4.9180 1.7484 42 1 -0.3280 -4.1776 2.0071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018744471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:06 Heat of formation + Delta-G solvation = -44.557957 kcal Electronic energy + Delta-G solvation = -23159.137210 eV Core-core repulsion = 19754.111912 eV Total energy + Delta-G solvation = -3405.025299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66512 -39.02315 -37.32912 -35.71838 -34.19026 -32.10967 -31.20435 -29.58504 -29.12840 -27.72387 -25.10988 -24.44647 -23.60746 -22.78110 -21.13159 -20.03950 -19.08964 -17.49498 -17.26478 -16.77827 -16.59613 -15.76805 -15.55666 -15.22457 -14.93060 -14.54845 -14.15507 -13.97251 -13.64768 -13.52875 -13.22528 -12.96663 -12.58707 -12.45218 -12.24868 -11.95689 -11.82250 -11.70317 -11.47577 -11.23436 -10.95268 -10.86343 -10.76583 -10.36666 -10.14804 -10.11447 -9.80145 -9.56087 -9.00734 -8.66259 -8.45663 -7.08480 -5.85139 -3.16189 2.58870 2.89904 3.39050 3.44143 3.45975 3.46131 3.68724 4.42917 4.51488 4.52324 4.65262 4.76595 4.87762 4.90361 4.98162 5.20055 5.24460 5.26588 5.29215 5.33746 5.40696 5.46974 5.51415 5.55406 5.65975 5.71108 5.79362 5.91169 6.09372 6.20582 6.32016 6.44781 6.55040 6.59134 6.64421 6.78830 6.84531 7.61835 7.64346 8.25330 8.32123 9.43592 9.97390 10.32024 11.36932 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038099 B = 0.003383 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.748463 B = 8274.789170 C = 8478.201559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.019 3.981 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.076 3.924 7 C 0.036 3.964 8 H 0.069 0.931 9 C 0.531 3.469 10 O -0.521 6.521 11 N -0.613 5.613 12 C 0.095 3.905 13 C -0.154 4.154 14 C 0.172 3.828 15 H 0.067 0.933 16 N -0.715 5.715 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.100 3.900 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.072 0.928 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 21.521 -5.694 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.109 4.109 4 C -0.017 4.017 5 O -0.297 6.297 6 C -0.002 4.002 7 C -0.076 4.076 8 H 0.087 0.913 9 C 0.317 3.683 10 O -0.397 6.397 11 N -0.348 5.348 12 C -0.028 4.028 13 C -0.195 4.195 14 C 0.060 3.940 15 H 0.085 0.915 16 N -0.355 5.355 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.023 4.023 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.262 21.021 -6.480 22.033 hybrid contribution -0.642 -0.363 1.218 1.424 sum 0.620 20.658 -5.262 21.326 Atomic orbital electron populations 1.22484 0.86126 1.03455 1.00613 1.61946 1.08918 1.12771 1.40882 1.22853 0.96599 0.89412 1.02046 1.22733 0.92137 0.96553 0.90313 1.88016 1.69516 1.23586 1.48540 1.22562 0.89543 0.84309 1.03746 1.22288 0.97919 0.93154 0.94226 0.91298 1.19738 0.78902 0.86675 0.82941 1.90716 1.50159 1.70211 1.28586 1.48538 1.60558 1.18927 1.06739 1.22458 0.99373 0.98450 0.82506 1.23577 1.02490 0.94107 0.99374 1.21177 0.95783 0.86320 0.90685 0.91527 1.42365 1.66494 1.03851 1.22780 1.19219 1.29921 0.92159 0.96514 0.90937 1.24781 1.00685 0.96832 0.98294 1.69664 1.43825 1.10822 1.33331 0.86169 0.77790 0.79676 0.82373 1.21611 1.21713 1.20667 1.22371 0.97798 0.82595 0.99524 0.95663 0.90809 0.90155 0.93776 0.89082 0.88133 0.91868 0.87684 0.91208 0.91338 0.91687 0.90421 0.90512 0.77894 0.93303 0.90950 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.26 60.06 0.56 0.79 16 2 N -0.52 -6.19 4.53 -235.97 -1.07 -7.26 16 3 C 0.02 0.17 5.66 -3.71 -0.02 0.15 16 4 C 0.06 0.52 7.01 37.21 0.26 0.78 16 5 O -0.38 -4.25 10.83 -35.23 -0.38 -4.63 16 6 C 0.08 0.89 6.24 37.21 0.23 1.12 16 7 C 0.04 0.45 1.71 -68.75 -0.12 0.33 16 8 H 0.07 0.79 7.43 -51.93 -0.39 0.40 16 9 C 0.53 8.24 5.91 -10.99 -0.06 8.17 16 10 O -0.52 -9.97 15.80 5.55 0.09 -9.88 16 11 N -0.61 -9.26 3.33 -170.51 -0.57 -9.83 16 12 C 0.10 1.20 6.24 -2.53 -0.02 1.19 16 13 C -0.15 -2.41 6.77 -24.58 -0.17 -2.57 16 14 C 0.17 3.21 3.61 -66.10 -0.24 2.97 16 15 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 16 N -0.71 -17.15 5.22 -51.66 -0.27 -17.42 16 17 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.10 1.75 6.62 -3.06 -0.02 1.73 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.09 6.13 -51.93 -0.32 0.78 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 1.11 7.11 -51.93 -0.37 0.75 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.74 6.70 -51.93 -0.35 0.39 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.39 10.02 7.56 -40.82 -0.31 9.72 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 1.41 7.72 -51.93 -0.40 1.01 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -31.62 334.57 -8.05 -39.67 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.75 Total: 6.75 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.16 Total: 7.58 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -1.18 Total: -61.25 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.29 Total: -14.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.62 -8.05 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018744471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.887 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds