Wall clock time and date at job start Tue Mar 31 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47014 * 110.99990 * 2 1 4 4 C 1.53101 * 109.25548 * 182.39754 * 3 2 1 5 5 O 1.43017 * 109.25654 * 303.14495 * 4 3 2 6 6 C 1.43013 * 113.73900 * 58.67133 * 5 4 3 7 7 C 1.47012 * 111.00223 * 123.63170 * 2 1 3 8 8 H 1.09007 * 109.54508 * 297.56653 * 7 2 1 9 9 C 1.50708 * 109.50603 * 57.66873 * 7 2 1 10 10 O 1.21284 * 119.99359 * 28.58245 * 9 7 2 11 11 N 1.34767 * 120.00198 * 208.57891 * 9 7 2 12 12 C 1.47430 * 125.64997 * 355.03807 * 11 9 7 13 13 C 1.54910 * 104.82923 * 204.09137 * 12 11 9 14 14 C 1.55155 * 101.58486 * 322.99016 * 13 12 11 15 15 H 1.09002 * 110.71966 * 277.13749 * 14 13 12 16 16 N 1.46496 * 110.72039 * 153.87083 * 14 13 12 17 17 C 1.36936 * 120.00307 * 91.47657 * 16 14 13 18 18 H 1.07999 * 120.00178 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99793 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00300 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47311 * 89.99598 * 21 19 17 23 23 H 1.48500 * 109.47496 * 209.99883 * 21 19 17 24 24 H 1.48501 * 109.47308 * 330.00055 * 21 19 17 25 25 C 1.47025 * 125.64871 * 174.99589 * 11 9 7 26 26 H 1.09003 * 109.46918 * 300.79139 * 1 2 3 27 27 H 1.09001 * 109.47210 * 60.78653 * 1 2 3 28 28 H 1.08997 * 109.47279 * 180.79089 * 1 2 3 29 29 H 1.08996 * 109.51044 * 62.45685 * 3 2 1 30 30 H 1.08997 * 109.53913 * 302.34428 * 3 2 1 31 31 H 1.09005 * 109.50636 * 183.21788 * 4 3 2 32 32 H 1.08997 * 109.54759 * 63.10327 * 4 3 2 33 33 H 1.08995 * 109.50785 * 181.39048 * 6 5 4 34 34 H 1.09003 * 109.50231 * 61.26726 * 6 5 4 35 35 H 1.09001 * 110.36308 * 322.93147 * 12 11 9 36 36 H 1.08998 * 110.36550 * 85.14116 * 12 11 9 37 37 H 1.09003 * 110.99702 * 204.91337 * 13 12 11 38 38 H 1.08996 * 111.00534 * 81.06871 * 13 12 11 39 39 H 0.96998 * 119.99613 * 271.47669 * 16 14 13 40 40 H 0.96999 * 119.99784 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.88405 * 59.55936 * 25 11 9 42 42 H 1.09002 * 109.88045 * 298.39191 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3263 -0.0605 5 8 4.0175 0.5574 1.0402 6 6 3.5249 -0.7849 1.0710 7 6 1.9959 -0.7601 1.1427 8 1 1.6827 -0.2849 2.0724 9 6 1.4669 -2.1706 1.0958 10 8 1.1852 -2.6773 0.0305 11 7 1.3071 -2.8687 2.2374 12 6 1.7040 -2.4170 3.5835 13 6 1.8983 -3.7204 4.3978 14 6 0.7602 -4.6121 3.8349 15 1 -0.1852 -4.3887 4.3294 16 7 1.0967 -6.0311 3.9738 17 6 0.7128 -6.7194 5.0937 18 1 0.1623 -6.2160 5.8747 19 6 1.0321 -8.0638 5.2255 20 7 1.7034 -8.6772 4.2739 21 14 0.5090 -9.0026 6.7534 22 1 -0.8333 -9.5984 6.5331 23 1 1.4902 -10.0820 7.0314 24 1 0.4541 -8.0735 7.9106 25 6 0.7073 -4.2066 2.3469 26 1 -0.3633 0.5261 0.8828 27 1 -0.3634 0.5016 -0.8970 28 1 -0.3634 -1.0275 0.0142 29 1 1.6827 1.8826 0.9109 30 1 1.6134 1.9098 -0.8678 31 1 3.9222 2.3398 -0.0031 32 1 3.8391 0.8647 -0.9965 33 1 3.9222 -1.2984 1.9465 34 1 3.8385 -1.3084 0.1678 35 1 2.6378 -1.8567 3.5356 36 1 0.9176 -1.8052 4.0255 37 1 1.7616 -3.5390 5.4639 38 1 2.8749 -4.1624 4.2005 39 1 1.5914 -6.4831 3.2725 40 1 1.9268 -9.6166 4.3662 41 1 1.2763 -4.9180 1.7484 42 1 -0.3280 -4.1776 2.0071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018744471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:05 Heat of formation + Delta-G solvation = -69.009124 kcal Electronic energy + Delta-G solvation = -23160.197492 eV Core-core repulsion = 19754.111912 eV Total energy + Delta-G solvation = -3406.085581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73699 -40.08562 -38.64690 -36.61795 -35.94623 -33.54536 -32.47512 -31.01262 -30.02425 -29.16528 -26.29286 -25.36731 -25.19302 -24.02320 -22.09828 -21.46279 -20.21518 -19.36347 -18.45736 -17.80433 -17.48872 -17.01029 -16.61719 -16.38066 -16.04876 -15.87986 -15.46560 -15.20859 -14.95623 -14.85996 -14.45927 -14.22588 -13.85361 -13.39243 -13.30410 -13.21474 -13.13270 -12.96669 -12.72302 -12.67164 -12.39309 -12.28469 -12.10511 -11.77436 -11.73875 -11.68831 -11.10259 -10.94902 -10.67453 -9.74932 -9.48061 -9.05390 -7.94948 -5.25545 1.39790 1.49706 1.51236 1.59487 1.73295 2.56740 2.63188 2.84601 3.33221 3.41966 3.63950 3.72342 3.84055 3.87608 3.89845 3.99060 4.18483 4.23019 4.26269 4.36306 4.42655 4.45778 4.50166 4.54303 4.60109 4.68675 4.80840 4.84476 4.90198 4.94467 4.96780 5.14411 5.23869 5.42406 5.53643 5.68166 5.86945 5.99745 6.25336 6.44479 7.03166 7.31853 8.03461 8.26941 9.28556 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038099 B = 0.003383 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.748463 B = 8274.789170 C = 8478.201559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.021 3.979 4 C 0.054 3.946 5 O -0.385 6.385 6 C 0.079 3.921 7 C 0.046 3.954 8 H 0.088 0.912 9 C 0.530 3.470 10 O -0.565 6.565 11 N -0.612 5.612 12 C 0.102 3.898 13 C -0.144 4.144 14 C 0.166 3.834 15 H 0.074 0.926 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.085 0.915 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.975 3.025 22 H -0.289 1.289 23 H -0.299 1.299 24 H -0.264 1.264 25 C 0.110 3.890 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.044 0.956 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 24.611 -4.355 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.106 4.106 4 C -0.023 4.023 5 O -0.304 6.304 6 C 0.002 3.998 7 C -0.066 4.066 8 H 0.105 0.895 9 C 0.318 3.682 10 O -0.444 6.444 11 N -0.346 5.346 12 C -0.019 4.019 13 C -0.185 4.185 14 C 0.056 3.944 15 H 0.092 0.908 16 N -0.370 5.370 17 C -0.372 4.372 18 H 0.103 0.897 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.804 3.196 22 H -0.217 1.217 23 H -0.226 1.226 24 H -0.188 1.188 25 C -0.014 4.014 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.064 24.200 -5.109 24.757 hybrid contribution -0.605 -1.214 0.719 1.535 sum 0.459 22.987 -4.390 23.407 Atomic orbital electron populations 1.22418 0.85934 1.01814 1.02106 1.61940 1.09338 1.14650 1.40906 1.22951 0.96446 0.87777 1.03436 1.22979 0.92284 0.97604 0.89404 1.88013 1.69704 1.23150 1.49491 1.22493 0.89034 0.84867 1.03448 1.22216 0.98136 0.90818 0.95402 0.89474 1.20389 0.77883 0.87775 0.82107 1.90693 1.52021 1.71406 1.30241 1.48591 1.60187 1.17848 1.07989 1.22602 1.01823 0.97181 0.80344 1.23371 0.99877 0.94656 1.00579 1.21386 0.97209 0.84173 0.91593 0.90769 1.42550 1.66567 1.06015 1.21861 1.19657 1.28164 0.92348 0.96990 0.89718 1.25603 1.01813 0.98097 1.01294 1.69834 1.46162 1.10643 1.35539 0.85124 0.76771 0.78203 0.79536 1.21674 1.22619 1.18845 1.22046 0.97394 0.83667 0.98336 0.94138 0.89338 0.93288 0.92766 0.87164 0.85191 0.92435 0.86681 0.92955 0.88514 0.88778 0.88969 0.92331 0.79629 0.94067 0.93780 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.26 127.69 1.18 1.70 16 2 N -0.54 -11.85 4.53 -900.48 -4.08 -15.93 16 3 C 0.02 0.30 5.66 86.32 0.49 0.79 16 4 C 0.05 0.78 7.01 72.02 0.50 1.28 16 5 O -0.39 -7.63 10.83 -148.98 -1.61 -9.24 16 6 C 0.08 1.71 6.24 72.01 0.45 2.16 16 7 C 0.05 1.05 1.71 44.18 0.08 1.13 16 8 H 0.09 1.67 7.43 -2.38 -0.02 1.65 16 9 C 0.53 16.13 5.91 87.66 0.52 16.64 16 10 O -0.57 -22.15 15.80 -3.04 -0.05 -22.19 16 11 N -0.61 -17.86 3.33 -811.78 -2.70 -20.56 16 12 C 0.10 2.27 6.24 86.85 0.54 2.81 16 13 C -0.14 -4.23 6.77 31.99 0.22 -4.02 16 14 C 0.17 6.10 3.61 46.18 0.17 6.27 16 15 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 16 N -0.73 -35.60 5.22 -317.34 -1.66 -37.26 16 17 C -0.24 -12.73 9.96 84.03 0.84 -11.90 16 18 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 20 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 21 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 25 C 0.11 3.89 6.62 86.73 0.57 4.47 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.32 6.13 -2.39 -0.01 1.31 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 2.18 7.11 -2.39 -0.02 2.16 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.68 6.70 -2.39 -0.02 1.67 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.37 20.07 7.56 -92.71 -0.70 19.37 16 40 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.04 1.81 7.72 -2.39 -0.02 1.79 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.22 334.57 -1.46 -71.68 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.31 Total: 27.77 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 6.02 Total: 17.55 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -8.16 Total: -132.56 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.66 Total: -31.43 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.22 -1.46 -71.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018744471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.671 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds