Wall clock time and date at job start Tue Mar 31 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47013 * 111.00180 * 2 1 4 4 C 1.53103 * 109.26005 * 182.39116 * 3 2 1 5 5 O 1.43009 * 109.25787 * 303.15249 * 4 3 2 6 6 C 1.43008 * 113.74374 * 58.66676 * 5 4 3 7 7 H 1.08995 * 109.54224 * 61.28441 * 6 5 4 8 8 C 1.50697 * 109.50973 * 181.39652 * 6 5 4 9 9 O 1.21288 * 119.99942 * 4.78416 * 8 6 5 10 10 N 1.34770 * 120.00305 * 184.78482 * 8 6 5 11 11 C 1.46505 * 120.00514 * 179.97438 * 10 8 6 12 12 H 1.09003 * 112.90428 * 23.74454 * 11 10 8 13 13 C 1.53778 * 113.61633 * 154.99761 * 11 10 8 14 14 C 1.53781 * 87.07854 * 89.11891 * 13 11 10 15 15 H 1.09002 * 113.61190 * 270.79620 * 14 13 11 16 16 N 1.46506 * 113.61132 * 139.98151 * 14 13 11 17 17 C 1.36938 * 119.99589 * 155.00038 * 16 14 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99408 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99550 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47239 * 120.00535 * 21 19 17 24 24 H 1.48501 * 109.46793 * 240.00116 * 21 19 17 25 25 C 1.53777 * 113.61469 * 252.50118 * 11 10 8 26 26 C 1.47018 * 110.99949 * 123.62941 * 2 1 3 27 27 H 1.09006 * 109.46721 * 296.36542 * 1 2 3 28 28 H 1.08993 * 109.46850 * 56.36967 * 1 2 3 29 29 H 1.09001 * 109.47216 * 176.36783 * 1 2 3 30 30 H 1.09001 * 109.50101 * 302.32579 * 3 2 1 31 31 H 1.08994 * 109.51034 * 62.45680 * 3 2 1 32 32 H 1.09000 * 109.50198 * 63.08577 * 4 3 2 33 33 H 1.08999 * 109.50446 * 183.20623 * 4 3 2 34 34 H 0.97001 * 120.00114 * 359.97438 * 10 8 6 35 35 H 1.08997 * 113.61430 * 334.57051 * 13 11 10 36 36 H 1.09002 * 113.61202 * 203.66982 * 13 11 10 37 37 H 0.96995 * 120.00050 * 334.72245 * 16 14 13 38 38 H 0.97000 * 119.99693 * 180.02562 * 20 19 17 39 39 H 1.09000 * 113.61314 * 156.33591 * 25 11 10 40 40 H 1.09002 * 113.61704 * 25.42655 * 25 11 10 41 41 H 1.09000 * 109.50626 * 57.67380 * 26 2 1 42 42 H 1.08993 * 109.54688 * 297.56652 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 -0.0603 5 8 4.0175 0.5574 1.0403 6 6 3.5250 -0.7849 1.0710 7 1 3.8385 -1.3090 0.1683 8 6 4.0741 -1.4948 2.2815 9 8 4.7436 -0.8865 3.0896 10 7 3.8214 -2.8057 2.4663 11 6 4.3558 -3.4961 3.6428 12 1 4.5685 -2.8202 4.4711 13 6 3.5423 -4.7352 4.0523 14 6 4.4431 -5.5429 3.1031 15 1 4.0687 -5.5902 2.0805 16 7 4.8238 -6.8556 3.6308 17 6 5.1608 -7.8673 2.7716 18 1 5.1456 -7.6977 1.7052 19 6 5.5220 -9.1108 3.2717 20 7 5.5401 -9.3177 4.5713 21 14 5.9811 -10.4912 2.0997 22 1 5.8813 -10.0058 0.6999 23 1 7.3732 -10.9301 2.3729 24 1 5.0542 -11.6349 2.2949 25 6 5.5113 -4.4582 3.3205 26 6 1.9958 -0.7601 1.1428 27 1 -0.3633 0.4564 0.9208 28 1 -0.3633 0.5691 -0.8556 29 1 -0.3634 -1.0256 -0.0651 30 1 1.6133 1.9091 -0.8682 31 1 1.6828 1.8826 0.9109 32 1 3.8385 0.8643 -0.9964 33 1 3.9222 2.3398 -0.0031 34 1 3.2857 -3.2921 1.8203 35 1 2.4996 -4.6966 3.7372 36 1 3.6587 -5.0068 5.1014 37 1 4.8410 -7.0068 4.5887 38 1 5.7929 -10.1866 4.9207 39 1 6.1660 -4.6542 4.1697 40 1 6.0581 -4.1960 2.4148 41 1 1.6133 -1.7803 1.1088 42 1 1.6828 -0.2849 2.0724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020045908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:20 Heat of formation + Delta-G solvation = -34.095288 kcal Electronic energy + Delta-G solvation = -22472.057750 eV Core-core repulsion = 19067.486147 eV Total energy + Delta-G solvation = -3404.571603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58900 -39.31782 -37.76752 -36.00545 -34.07672 -32.88334 -31.53756 -29.88574 -29.04943 -25.66932 -25.13875 -24.50995 -24.32051 -22.27297 -21.27284 -20.55627 -18.99881 -17.68645 -17.11860 -16.75541 -16.33386 -15.90356 -15.57433 -15.30914 -14.98696 -14.81043 -14.30669 -14.12123 -13.84032 -13.69389 -13.29349 -12.77056 -12.67291 -12.42150 -12.18410 -12.03757 -11.87036 -11.77330 -11.64808 -11.11556 -10.92826 -10.78987 -10.34340 -10.20287 -10.04418 -9.92758 -9.69565 -9.57824 -8.93411 -8.89416 -8.81575 -6.99775 -5.81457 -3.10522 2.53080 2.73180 3.34941 3.40796 3.46574 3.48813 3.81867 4.39271 4.50768 4.53654 4.56470 4.68313 4.79834 4.90467 5.02729 5.05587 5.09839 5.14645 5.19776 5.32482 5.37296 5.43489 5.45227 5.48683 5.52636 5.85343 5.90194 6.11103 6.23461 6.30996 6.40230 6.43807 6.46784 6.60867 6.67724 6.75232 7.06864 7.53943 7.66619 8.23125 8.36905 9.48333 10.05559 10.39860 11.40931 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.003060 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.104647 B = 9148.074127 C = 9474.320975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.014 3.986 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.078 3.922 7 H 0.094 0.906 8 C 0.521 3.479 9 O -0.520 6.520 10 N -0.703 5.703 11 C 0.116 3.884 12 H 0.096 0.904 13 C -0.158 4.158 14 C 0.166 3.834 15 H 0.074 0.926 16 N -0.712 5.712 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.176 4.176 26 C 0.028 3.972 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.397 20.620 -9.532 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.273 6.273 6 C 0.016 3.984 7 H 0.112 0.888 8 C 0.305 3.695 9 O -0.394 6.394 10 N -0.355 5.355 11 C 0.011 3.989 12 H 0.114 0.886 13 C -0.198 4.198 14 C 0.054 3.946 15 H 0.092 0.908 16 N -0.350 5.350 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.219 4.219 26 C -0.100 4.100 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.587 20.755 -9.370 24.708 hybrid contribution -0.454 -0.773 -0.098 0.902 sum -10.041 19.982 -9.468 24.285 Atomic orbital electron populations 1.22405 0.86285 1.02866 1.00852 1.62220 1.08678 1.13692 1.41929 1.22869 0.96737 0.89816 1.02037 1.22756 0.92055 0.96698 0.90030 1.88133 1.69241 1.21708 1.48212 1.21951 0.92915 0.85720 0.97812 0.88800 1.19970 0.80778 0.82179 0.86552 1.90726 1.37998 1.65990 1.44690 1.45610 1.54410 1.09031 1.26450 1.21841 0.96595 0.92830 0.87616 0.88554 1.23862 0.98850 0.94993 1.02115 1.21633 0.92235 0.85095 0.95643 0.90783 1.42412 1.79422 1.06683 1.06503 1.19340 1.38016 0.90378 0.89869 0.91030 1.24774 1.02332 0.97901 0.95864 1.69668 1.54565 1.23202 1.10509 0.86119 0.77789 0.82360 0.79921 1.20505 1.21823 1.21834 1.24317 0.97945 0.97666 1.01936 1.22699 0.94057 1.00364 0.92907 0.95281 0.90948 0.90752 0.89282 0.93622 0.91889 0.87792 0.76472 0.91736 0.88955 0.78002 0.93461 0.89500 0.92321 0.88747 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.60 60.06 0.58 0.73 16 2 N -0.54 -4.48 4.99 -242.59 -1.21 -5.69 16 3 C 0.01 0.10 5.66 -3.71 -0.02 0.08 16 4 C 0.06 0.52 7.01 37.21 0.26 0.79 16 5 O -0.36 -4.54 10.01 -55.06 -0.55 -5.09 16 6 C 0.08 0.88 3.22 -27.83 -0.09 0.79 16 7 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 8 C 0.52 7.41 7.18 -10.99 -0.08 7.33 16 9 O -0.52 -9.71 16.11 -14.28 -0.23 -9.94 16 10 N -0.70 -8.91 5.23 -53.02 -0.28 -9.19 16 11 C 0.12 1.74 4.32 -67.12 -0.29 1.45 16 12 H 0.10 1.54 7.47 -51.93 -0.39 1.15 16 13 C -0.16 -2.43 7.58 -25.92 -0.20 -2.63 16 14 C 0.17 3.12 4.36 -67.11 -0.29 2.83 16 15 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 16 N -0.71 -17.41 5.40 -52.63 -0.28 -17.69 16 17 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C -0.18 -3.09 7.68 -25.92 -0.20 -3.29 16 26 C 0.03 0.26 4.90 -3.71 -0.02 0.24 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 4.06 8.57 -40.82 -0.35 3.71 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 37 H 0.39 10.03 7.93 -40.82 -0.32 9.70 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 0.72 8.01 -51.93 -0.42 0.31 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -33.53 344.66 -9.19 -42.72 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.94 Total: 8.68 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.59 Total: 1.05 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -1.05 Total: -59.68 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.78 Total: -15.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.53 -9.19 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020045908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.624 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds