Wall clock time and date at job start Tue Mar 31 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47013 * 111.00180 * 2 1 4 4 C 1.53103 * 109.26005 * 182.39116 * 3 2 1 5 5 O 1.43009 * 109.25787 * 303.15249 * 4 3 2 6 6 C 1.43008 * 113.74374 * 58.66676 * 5 4 3 7 7 H 1.08995 * 109.54224 * 61.28441 * 6 5 4 8 8 C 1.50697 * 109.50973 * 181.39652 * 6 5 4 9 9 O 1.21288 * 119.99942 * 4.78416 * 8 6 5 10 10 N 1.34770 * 120.00305 * 184.78482 * 8 6 5 11 11 C 1.46505 * 120.00514 * 179.97438 * 10 8 6 12 12 H 1.09003 * 112.90428 * 23.74454 * 11 10 8 13 13 C 1.53778 * 113.61633 * 154.99761 * 11 10 8 14 14 C 1.53781 * 87.07854 * 89.11891 * 13 11 10 15 15 H 1.09002 * 113.61190 * 270.79620 * 14 13 11 16 16 N 1.46506 * 113.61132 * 139.98151 * 14 13 11 17 17 C 1.36938 * 119.99589 * 155.00038 * 16 14 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99408 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99550 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47239 * 120.00535 * 21 19 17 24 24 H 1.48501 * 109.46793 * 240.00116 * 21 19 17 25 25 C 1.53777 * 113.61469 * 252.50118 * 11 10 8 26 26 C 1.47018 * 110.99949 * 123.62941 * 2 1 3 27 27 H 1.09006 * 109.46721 * 296.36542 * 1 2 3 28 28 H 1.08993 * 109.46850 * 56.36967 * 1 2 3 29 29 H 1.09001 * 109.47216 * 176.36783 * 1 2 3 30 30 H 1.09001 * 109.50101 * 302.32579 * 3 2 1 31 31 H 1.08994 * 109.51034 * 62.45680 * 3 2 1 32 32 H 1.09000 * 109.50198 * 63.08577 * 4 3 2 33 33 H 1.08999 * 109.50446 * 183.20623 * 4 3 2 34 34 H 0.97001 * 120.00114 * 359.97438 * 10 8 6 35 35 H 1.08997 * 113.61430 * 334.57051 * 13 11 10 36 36 H 1.09002 * 113.61202 * 203.66982 * 13 11 10 37 37 H 0.96995 * 120.00050 * 334.72245 * 16 14 13 38 38 H 0.97000 * 119.99693 * 180.02562 * 20 19 17 39 39 H 1.09000 * 113.61314 * 156.33591 * 25 11 10 40 40 H 1.09002 * 113.61704 * 25.42655 * 25 11 10 41 41 H 1.09000 * 109.50626 * 57.67380 * 26 2 1 42 42 H 1.08993 * 109.54688 * 297.56652 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 -0.0603 5 8 4.0175 0.5574 1.0403 6 6 3.5250 -0.7849 1.0710 7 1 3.8385 -1.3090 0.1683 8 6 4.0741 -1.4948 2.2815 9 8 4.7436 -0.8865 3.0896 10 7 3.8214 -2.8057 2.4663 11 6 4.3558 -3.4961 3.6428 12 1 4.5685 -2.8202 4.4711 13 6 3.5423 -4.7352 4.0523 14 6 4.4431 -5.5429 3.1031 15 1 4.0687 -5.5902 2.0805 16 7 4.8238 -6.8556 3.6308 17 6 5.1608 -7.8673 2.7716 18 1 5.1456 -7.6977 1.7052 19 6 5.5220 -9.1108 3.2717 20 7 5.5401 -9.3177 4.5713 21 14 5.9811 -10.4912 2.0997 22 1 5.8813 -10.0058 0.6999 23 1 7.3732 -10.9301 2.3729 24 1 5.0542 -11.6349 2.2949 25 6 5.5113 -4.4582 3.3205 26 6 1.9958 -0.7601 1.1428 27 1 -0.3633 0.4564 0.9208 28 1 -0.3633 0.5691 -0.8556 29 1 -0.3634 -1.0256 -0.0651 30 1 1.6133 1.9091 -0.8682 31 1 1.6828 1.8826 0.9109 32 1 3.8385 0.8643 -0.9964 33 1 3.9222 2.3398 -0.0031 34 1 3.2857 -3.2921 1.8203 35 1 2.4996 -4.6966 3.7372 36 1 3.6587 -5.0068 5.1014 37 1 4.8410 -7.0068 4.5887 38 1 5.7929 -10.1866 4.9207 39 1 6.1660 -4.6542 4.1697 40 1 6.0581 -4.1960 2.4148 41 1 1.6133 -1.7803 1.1088 42 1 1.6828 -0.2849 2.0724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020045908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:20 Heat of formation + Delta-G solvation = -59.882788 kcal Electronic energy + Delta-G solvation = -22473.175980 eV Core-core repulsion = 19067.486147 eV Total energy + Delta-G solvation = -3405.689833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60217 -40.37247 -39.03726 -36.73458 -35.76900 -34.32834 -32.56220 -31.57860 -29.74961 -26.79048 -26.52497 -25.89606 -25.11056 -23.82160 -22.21802 -21.42476 -20.41241 -19.19510 -18.57316 -17.72211 -17.14438 -17.01834 -16.53810 -16.43553 -16.03311 -15.90087 -15.61339 -15.40583 -15.21706 -14.80546 -14.41678 -14.12490 -13.57553 -13.43489 -13.31604 -13.30356 -12.93701 -12.83941 -12.79618 -12.58794 -12.43421 -12.09449 -11.85193 -11.79458 -11.73762 -11.20171 -10.89302 -10.84439 -10.77172 -10.08716 -9.51225 -8.97987 -7.93887 -5.22254 1.42974 1.49108 1.49903 1.59596 1.73382 2.57697 2.69818 3.00478 3.37943 3.60382 3.66090 3.71875 3.83570 3.89855 3.97133 3.97348 4.14678 4.29685 4.33480 4.34059 4.48293 4.56993 4.61896 4.65411 4.72053 4.78651 4.90714 4.91463 4.92324 5.02578 5.13927 5.20165 5.23873 5.52420 5.67978 5.78459 5.88438 5.99372 6.28442 6.49746 7.14986 7.34727 8.11402 8.33441 9.29680 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.003060 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.104647 B = 9148.074127 C = 9474.320975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.545 5.545 3 C 0.015 3.985 4 C 0.056 3.944 5 O -0.390 6.390 6 C 0.083 3.917 7 H 0.111 0.889 8 C 0.521 3.479 9 O -0.570 6.570 10 N -0.689 5.689 11 C 0.134 3.866 12 H 0.088 0.912 13 C -0.140 4.140 14 C 0.153 3.847 15 H 0.087 0.913 16 N -0.728 5.728 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.298 1.298 24 H -0.294 1.294 25 C -0.175 4.175 26 C 0.034 3.966 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.417 0.583 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 21.423 -11.774 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.113 4.113 4 C -0.020 4.020 5 O -0.309 6.309 6 C 0.022 3.978 7 H 0.129 0.871 8 C 0.307 3.693 9 O -0.448 6.448 10 N -0.341 5.341 11 C 0.027 3.973 12 H 0.106 0.894 13 C -0.179 4.179 14 C 0.043 3.957 15 H 0.105 0.895 16 N -0.365 5.365 17 C -0.373 4.373 18 H 0.098 0.902 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.225 1.225 24 H -0.221 1.221 25 C -0.217 4.217 26 C -0.095 4.095 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.254 0.746 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.136 21.597 -11.680 26.960 hybrid contribution 0.010 -0.899 0.557 1.057 sum -11.127 20.698 -11.123 25.998 Atomic orbital electron populations 1.22476 0.85023 1.03607 1.01362 1.62268 1.09793 1.13911 1.41043 1.22903 0.96038 0.89717 1.02654 1.23004 0.92849 0.96995 0.89166 1.88088 1.70244 1.22462 1.50086 1.21937 0.94090 0.85341 0.96474 0.87104 1.20569 0.79726 0.82193 0.86808 1.90704 1.40330 1.67082 1.46650 1.45451 1.53937 1.08762 1.25978 1.21521 0.95213 0.92331 0.88186 0.89367 1.23664 0.99747 0.93479 1.01039 1.21990 0.93606 0.83085 0.96999 0.89506 1.42618 1.79896 1.08233 1.05738 1.19760 1.36030 0.90939 0.90618 0.90199 1.25571 1.03632 1.00469 0.97291 1.69820 1.56651 1.23385 1.12296 0.85102 0.76712 0.79326 0.78808 1.18748 1.22513 1.22089 1.24179 0.98154 0.98118 1.01208 1.22646 0.92500 1.01537 0.92791 0.95527 0.89552 0.90072 0.86930 0.94545 0.90995 0.86373 0.74554 0.89091 0.89482 0.79405 0.94091 0.91223 0.92542 0.86898 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.60 127.69 1.23 1.46 16 2 N -0.55 -7.61 4.99 -921.43 -4.59 -12.20 16 3 C 0.01 0.19 5.66 86.32 0.49 0.68 16 4 C 0.06 0.85 7.01 72.02 0.50 1.36 16 5 O -0.39 -9.61 10.01 -130.02 -1.30 -10.91 16 6 C 0.08 1.74 3.22 29.88 0.10 1.84 16 7 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 8 C 0.52 14.26 7.18 87.66 0.63 14.89 16 9 O -0.57 -21.36 16.11 15.91 0.26 -21.10 16 10 N -0.69 -16.14 5.23 -440.04 -2.30 -18.44 16 11 C 0.13 3.84 4.32 45.51 0.20 4.04 16 12 H 0.09 2.78 7.47 -2.39 -0.02 2.76 16 13 C -0.14 -4.05 7.58 31.12 0.24 -3.82 16 14 C 0.15 5.55 4.36 45.52 0.20 5.75 16 15 H 0.09 2.93 8.10 -2.39 -0.02 2.91 16 16 N -0.73 -35.42 5.40 -320.43 -1.73 -37.16 16 17 C -0.24 -13.03 9.97 84.03 0.84 -12.19 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 20 N -0.97 -58.96 13.06 21.65 0.28 -58.68 16 21 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 C -0.17 -6.03 7.68 31.12 0.24 -5.79 16 26 C 0.03 0.56 4.90 86.32 0.42 0.98 16 27 H 0.03 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.42 7.18 8.57 -92.71 -0.79 6.38 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.68 8.12 -2.39 -0.02 2.66 16 37 H 0.37 19.72 7.93 -92.71 -0.73 18.99 16 38 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.11 1.37 8.01 -2.39 -0.02 1.36 16 42 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.87 344.66 -2.33 -75.20 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.51 Total: 30.56 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.54 Total: 5.27 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -8.34 Total: -126.47 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.04 Total: -32.01 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.87 -2.33 -75.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020045908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.312 kcal (2) G-P(sol) polarization free energy of solvation -72.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds