Wall clock time and date at job start Tue Mar 31 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47013 * 110.99788 * 2 1 4 4 C 1.53100 * 109.25463 * 177.60634 * 3 2 1 5 5 O 1.43014 * 109.26058 * 56.85017 * 4 3 2 6 6 C 1.43022 * 113.73661 * 301.33118 * 5 4 3 7 7 C 1.47009 * 110.99799 * 236.36574 * 2 1 3 8 8 H 1.08996 * 109.51153 * 62.45954 * 7 2 1 9 9 C 1.50707 * 109.50822 * 302.32266 * 7 2 1 10 10 O 1.21278 * 119.99909 * 332.72346 * 9 7 2 11 11 N 1.34771 * 119.99578 * 152.71727 * 9 7 2 12 12 C 1.46503 * 119.99878 * 180.02562 * 11 9 7 13 13 H 1.09004 * 112.84833 * 47.28485 * 12 11 9 14 14 C 1.53780 * 113.61503 * 178.58825 * 12 11 9 15 15 C 1.53780 * 87.07783 * 89.12179 * 14 12 11 16 16 H 1.08998 * 113.69263 * 139.99285 * 15 14 12 17 17 N 1.46501 * 113.61332 * 270.88073 * 15 14 12 18 18 C 1.36940 * 120.00007 * 253.40821 * 17 15 14 19 19 H 1.07994 * 120.00277 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47094 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46747 * 120.00064 * 22 20 18 25 25 H 1.48500 * 109.47400 * 240.00408 * 22 20 18 26 26 C 1.53775 * 87.08501 * 25.43169 * 15 14 12 27 27 H 1.08998 * 109.47337 * 63.20087 * 1 2 3 28 28 H 1.09003 * 109.47488 * 183.20055 * 1 2 3 29 29 H 1.08999 * 109.47679 * 303.19846 * 1 2 3 30 30 H 1.08999 * 109.50561 * 57.67547 * 3 2 1 31 31 H 1.08998 * 109.54285 * 297.56557 * 3 2 1 32 32 H 1.09003 * 109.50972 * 296.91208 * 4 3 2 33 33 H 1.09002 * 109.50592 * 176.78506 * 4 3 2 34 34 H 1.09000 * 109.50405 * 178.60495 * 6 5 4 35 35 H 1.09003 * 109.50312 * 298.73305 * 6 5 4 36 36 H 0.97000 * 120.00474 * 0.02562 * 11 9 7 37 37 H 1.09000 * 113.61366 * 203.66440 * 14 12 11 38 38 H 1.08998 * 113.61547 * 334.57009 * 14 12 11 39 39 H 0.97000 * 120.00124 * 73.40826 * 17 15 14 40 40 H 0.97002 * 119.99346 * 180.02562 * 21 20 18 41 41 H 1.09001 * 113.61630 * 220.02286 * 26 15 14 42 42 H 1.09001 * 113.61666 * 89.11297 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0175 0.5574 -1.0402 6 6 3.5249 -0.7850 -1.0709 7 6 1.9958 -0.7602 -1.1427 8 1 1.6827 -0.2843 -2.0720 9 6 1.4670 -2.1707 -1.0956 10 8 1.1631 -2.6691 -0.0326 11 7 1.3318 -2.8779 -2.2348 12 6 0.8173 -4.2489 -2.1892 13 1 -0.0787 -4.3445 -1.5757 14 6 0.6910 -4.9059 -3.5738 15 6 2.1401 -5.3871 -3.3905 16 1 2.3130 -6.4022 -3.7478 17 7 3.1408 -4.4344 -3.8777 18 6 3.8226 -4.6908 -5.0373 19 1 3.6231 -5.5953 -5.5924 20 6 4.7704 -3.7878 -5.4991 21 7 5.0141 -2.6855 -4.8222 22 14 5.7011 -4.1377 -7.0805 23 1 5.2462 -5.4332 -7.6463 24 1 5.4400 -3.0517 -8.0591 25 1 7.1565 -4.2062 -6.7936 26 6 1.8940 -5.3009 -1.8750 27 1 -0.3634 0.4633 -0.9173 28 1 -0.3634 -1.0261 0.0574 29 1 -0.3634 0.5627 0.8599 30 1 1.6133 1.9091 0.8682 31 1 1.6827 1.8832 -0.9106 32 1 3.8385 0.8643 0.9965 33 1 3.9221 2.3398 0.0030 34 1 3.9222 -1.2985 -1.9464 35 1 3.8384 -1.3084 -0.1677 36 1 1.5752 -2.4794 -3.0850 37 1 -0.0371 -5.7164 -3.6077 38 1 0.5679 -4.1906 -4.3869 39 1 3.3203 -3.6221 -3.3789 40 1 5.6761 -2.0544 -5.1452 41 1 2.7421 -4.9044 -1.3168 42 1 1.4947 -6.2193 -1.4446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021991265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:52 Heat of formation + Delta-G solvation = -28.877138 kcal Electronic energy + Delta-G solvation = -23770.635698 eV Core-core repulsion = 20366.290371 eV Total energy + Delta-G solvation = -3404.345327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.41797 -39.10714 -37.59517 -35.45032 -33.66663 -32.72890 -31.19912 -29.84889 -28.74475 -25.25325 -25.05204 -24.21937 -24.12863 -22.68625 -20.95218 -19.75918 -18.76214 -17.50172 -16.98373 -16.37535 -16.20154 -15.62381 -15.21288 -14.88416 -14.78310 -14.51781 -14.19751 -13.90276 -13.67692 -13.49319 -12.99467 -12.78966 -12.36411 -12.26206 -11.99899 -11.75985 -11.64068 -11.45958 -11.17313 -10.92978 -10.82500 -10.59011 -10.35286 -10.17435 -9.87981 -9.75895 -9.59320 -9.27668 -8.99754 -8.55413 -8.40455 -7.07316 -5.87128 -3.15964 2.84241 3.25577 3.38692 3.45235 3.47084 3.80188 4.07613 4.51734 4.82813 4.87883 4.96577 5.06293 5.11421 5.18838 5.20482 5.25977 5.42236 5.45036 5.47687 5.49561 5.61332 5.73859 5.82194 5.88371 5.90539 5.92890 6.13940 6.14062 6.27436 6.38964 6.60041 6.65925 6.76595 6.80543 6.87766 7.07750 7.20858 7.65662 7.88603 8.32641 8.55244 9.43864 9.99027 10.34468 11.35361 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.005814 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.646474 B = 4814.420881 C = 6229.284542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.019 3.981 4 C 0.058 3.942 5 O -0.373 6.373 6 C 0.076 3.924 7 C 0.034 3.966 8 H 0.069 0.931 9 C 0.524 3.476 10 O -0.528 6.528 11 N -0.701 5.701 12 C 0.128 3.872 13 H 0.078 0.922 14 C -0.179 4.179 15 C 0.165 3.835 16 H 0.064 0.936 17 N -0.706 5.706 18 C -0.245 4.245 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.168 4.168 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.409 0.591 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.384 0.616 40 H 0.257 0.743 41 H 0.068 0.932 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 5.687 7.954 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.109 4.109 4 C -0.019 4.019 5 O -0.291 6.291 6 C -0.001 4.001 7 C -0.079 4.079 8 H 0.087 0.913 9 C 0.308 3.692 10 O -0.403 6.403 11 N -0.354 5.354 12 C 0.023 3.977 13 H 0.096 0.904 14 C -0.221 4.221 15 C 0.052 3.948 16 H 0.083 0.917 17 N -0.345 5.345 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.208 4.208 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.246 0.754 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.445 5.111 8.833 13.247 hybrid contribution 0.122 0.696 -1.655 1.799 sum -8.323 5.808 7.178 12.431 Atomic orbital electron populations 1.22481 0.86628 1.03469 1.00158 1.61970 1.08502 1.12766 1.41193 1.22849 0.96881 0.89434 1.01749 1.22700 0.91944 0.96646 0.90634 1.88089 1.69309 1.23776 1.47877 1.22667 0.88899 0.84056 1.04524 1.22326 0.98502 0.93102 0.93928 0.91332 1.20052 0.78091 0.86921 0.84106 1.90662 1.49247 1.71078 1.29359 1.45884 1.65465 1.14380 1.09682 1.21712 0.96428 0.80915 0.98613 0.90394 1.24149 1.02085 1.00504 0.95330 1.21181 0.88002 0.94133 0.91468 0.91748 1.42255 1.42665 1.22689 1.26928 1.19333 1.14933 1.04231 0.99136 0.90916 1.24742 0.99739 0.96977 0.99159 1.69620 1.36961 1.11342 1.39849 0.86105 0.79656 0.77320 0.82975 1.20587 1.21866 1.21826 1.23848 0.99127 0.98474 0.99315 0.95845 0.90132 0.91154 0.89419 0.93846 0.92181 0.88427 0.85937 0.91777 0.75412 0.89887 0.90910 0.78088 0.93324 0.91286 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.19 60.06 0.55 0.81 16 2 N -0.52 -7.39 4.53 -235.97 -1.07 -8.46 16 3 C 0.02 0.22 5.66 -3.71 -0.02 0.20 16 4 C 0.06 0.71 7.01 37.21 0.26 0.97 16 5 O -0.37 -6.01 10.83 -35.23 -0.38 -6.40 16 6 C 0.08 1.27 6.27 37.21 0.23 1.50 16 7 C 0.03 0.52 2.38 -68.75 -0.16 0.36 16 8 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 9 C 0.52 8.99 6.01 -10.98 -0.07 8.93 16 10 O -0.53 -10.36 15.29 5.56 0.08 -10.27 16 11 N -0.70 -11.71 4.29 -53.01 -0.23 -11.94 16 12 C 0.13 2.09 3.98 -67.12 -0.27 1.82 16 13 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 14 C -0.18 -2.86 7.57 -25.92 -0.20 -3.06 16 15 C 0.16 3.13 4.56 -67.12 -0.31 2.82 16 16 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 17 N -0.71 -16.49 5.06 -52.64 -0.27 -16.76 16 18 C -0.25 -6.44 9.97 -15.06 -0.15 -6.59 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 22 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C -0.17 -2.87 7.62 -25.92 -0.20 -3.07 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 1.17 6.18 -51.93 -0.32 0.85 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.12 2.28 8.14 -51.93 -0.42 1.85 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 7.05 7.85 -40.82 -0.32 6.73 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 39 H 0.38 9.29 6.31 -40.82 -0.26 9.04 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -30.00 338.15 -8.26 -38.26 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -6.78 Total: 15.01 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.42 Total: 4.33 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.84 Total: -62.59 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.30 Total: -16.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.00 -8.26 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021991265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.386 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds