Wall clock time and date at job start Tue Mar 31 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47013 * 110.99788 * 2 1 4 4 C 1.53100 * 109.25463 * 177.60634 * 3 2 1 5 5 O 1.43014 * 109.26058 * 56.85017 * 4 3 2 6 6 C 1.43022 * 113.73661 * 301.33118 * 5 4 3 7 7 C 1.47009 * 110.99799 * 236.36574 * 2 1 3 8 8 H 1.08996 * 109.51153 * 62.45954 * 7 2 1 9 9 C 1.50707 * 109.50822 * 302.32266 * 7 2 1 10 10 O 1.21278 * 119.99909 * 332.72346 * 9 7 2 11 11 N 1.34771 * 119.99578 * 152.71727 * 9 7 2 12 12 C 1.46503 * 119.99878 * 180.02562 * 11 9 7 13 13 H 1.09004 * 112.84833 * 47.28485 * 12 11 9 14 14 C 1.53780 * 113.61503 * 178.58825 * 12 11 9 15 15 C 1.53780 * 87.07783 * 89.12179 * 14 12 11 16 16 H 1.08998 * 113.69263 * 139.99285 * 15 14 12 17 17 N 1.46501 * 113.61332 * 270.88073 * 15 14 12 18 18 C 1.36940 * 120.00007 * 253.40821 * 17 15 14 19 19 H 1.07994 * 120.00277 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47094 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46747 * 120.00064 * 22 20 18 25 25 H 1.48500 * 109.47400 * 240.00408 * 22 20 18 26 26 C 1.53775 * 87.08501 * 25.43169 * 15 14 12 27 27 H 1.08998 * 109.47337 * 63.20087 * 1 2 3 28 28 H 1.09003 * 109.47488 * 183.20055 * 1 2 3 29 29 H 1.08999 * 109.47679 * 303.19846 * 1 2 3 30 30 H 1.08999 * 109.50561 * 57.67547 * 3 2 1 31 31 H 1.08998 * 109.54285 * 297.56557 * 3 2 1 32 32 H 1.09003 * 109.50972 * 296.91208 * 4 3 2 33 33 H 1.09002 * 109.50592 * 176.78506 * 4 3 2 34 34 H 1.09000 * 109.50405 * 178.60495 * 6 5 4 35 35 H 1.09003 * 109.50312 * 298.73305 * 6 5 4 36 36 H 0.97000 * 120.00474 * 0.02562 * 11 9 7 37 37 H 1.09000 * 113.61366 * 203.66440 * 14 12 11 38 38 H 1.08998 * 113.61547 * 334.57009 * 14 12 11 39 39 H 0.97000 * 120.00124 * 73.40826 * 17 15 14 40 40 H 0.97002 * 119.99346 * 180.02562 * 21 20 18 41 41 H 1.09001 * 113.61630 * 220.02286 * 26 15 14 42 42 H 1.09001 * 113.61666 * 89.11297 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0175 0.5574 -1.0402 6 6 3.5249 -0.7850 -1.0709 7 6 1.9958 -0.7602 -1.1427 8 1 1.6827 -0.2843 -2.0720 9 6 1.4670 -2.1707 -1.0956 10 8 1.1631 -2.6691 -0.0326 11 7 1.3318 -2.8779 -2.2348 12 6 0.8173 -4.2489 -2.1892 13 1 -0.0787 -4.3445 -1.5757 14 6 0.6910 -4.9059 -3.5738 15 6 2.1401 -5.3871 -3.3905 16 1 2.3130 -6.4022 -3.7478 17 7 3.1408 -4.4344 -3.8777 18 6 3.8226 -4.6908 -5.0373 19 1 3.6231 -5.5953 -5.5924 20 6 4.7704 -3.7878 -5.4991 21 7 5.0141 -2.6855 -4.8222 22 14 5.7011 -4.1377 -7.0805 23 1 5.2462 -5.4332 -7.6463 24 1 5.4400 -3.0517 -8.0591 25 1 7.1565 -4.2062 -6.7936 26 6 1.8940 -5.3009 -1.8750 27 1 -0.3634 0.4633 -0.9173 28 1 -0.3634 -1.0261 0.0574 29 1 -0.3634 0.5627 0.8599 30 1 1.6133 1.9091 0.8682 31 1 1.6827 1.8832 -0.9106 32 1 3.8385 0.8643 0.9965 33 1 3.9221 2.3398 0.0030 34 1 3.9222 -1.2985 -1.9464 35 1 3.8384 -1.3084 -0.1677 36 1 1.5752 -2.4794 -3.0850 37 1 -0.0371 -5.7164 -3.6077 38 1 0.5679 -4.1906 -4.3869 39 1 3.3203 -3.6221 -3.3789 40 1 5.6761 -2.0544 -5.1452 41 1 2.7421 -4.9044 -1.3168 42 1 1.4947 -6.2193 -1.4446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021991265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:51 Heat of formation + Delta-G solvation = -51.533609 kcal Electronic energy + Delta-G solvation = -23771.618157 eV Core-core repulsion = 20366.290371 eV Total energy + Delta-G solvation = -3405.327786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71786 -40.40206 -38.98594 -36.60643 -35.46335 -34.23248 -32.46012 -31.63806 -29.83086 -26.69751 -26.41125 -25.84941 -25.25345 -24.15170 -22.19880 -21.04936 -20.22968 -19.27258 -18.38878 -17.58247 -17.46426 -16.88427 -16.61270 -16.43959 -16.02875 -15.93566 -15.53190 -15.30897 -15.06524 -14.87462 -14.73187 -14.01353 -13.52704 -13.47569 -13.26008 -13.21471 -13.03510 -12.80080 -12.73457 -12.53944 -12.27623 -12.08078 -11.88060 -11.74559 -11.67550 -11.12866 -10.99148 -10.89337 -10.59623 -9.94512 -9.48754 -8.97893 -7.91773 -5.19636 1.47548 1.49763 1.51464 1.60036 1.99989 2.57998 2.66998 2.93153 3.40758 3.59305 3.67314 3.73627 3.83930 3.86639 3.91164 4.01118 4.18134 4.24295 4.29422 4.40727 4.45675 4.50688 4.58191 4.65417 4.81981 4.83856 4.89416 4.91084 4.95281 5.01076 5.09238 5.25411 5.37560 5.54584 5.64292 5.74536 5.88820 6.05124 6.31095 6.50553 7.17906 7.37909 8.12281 8.37053 9.30457 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.005814 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.646474 B = 4814.420881 C = 6229.284542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.533 5.533 3 C 0.020 3.980 4 C 0.050 3.950 5 O -0.393 6.393 6 C 0.086 3.914 7 C 0.042 3.958 8 H 0.071 0.929 9 C 0.526 3.474 10 O -0.553 6.553 11 N -0.700 5.700 12 C 0.128 3.872 13 H 0.092 0.908 14 C -0.156 4.156 15 C 0.145 3.855 16 H 0.066 0.934 17 N -0.719 5.719 18 C -0.243 4.243 19 H 0.076 0.924 20 C -0.067 4.067 21 N -0.959 5.959 22 Si 0.967 3.033 23 H -0.268 1.268 24 H -0.295 1.295 25 H -0.299 1.299 26 C -0.159 4.159 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.406 0.594 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.377 0.623 40 H 0.250 0.750 41 H 0.039 0.961 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 5.794 8.169 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.107 4.107 4 C -0.026 4.026 5 O -0.311 6.311 6 C 0.008 3.992 7 C -0.071 4.071 8 H 0.089 0.911 9 C 0.311 3.689 10 O -0.431 6.431 11 N -0.352 5.352 12 C 0.023 3.977 13 H 0.110 0.890 14 C -0.197 4.197 15 C 0.035 3.965 16 H 0.085 0.915 17 N -0.358 5.358 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.260 4.260 21 N -0.609 5.609 22 Si 0.797 3.203 23 H -0.193 1.193 24 H -0.222 1.222 25 H -0.227 1.227 26 C -0.199 4.199 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.242 0.758 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.210 0.790 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.961 5.185 9.049 14.422 hybrid contribution 0.554 0.629 -1.648 1.849 sum -9.406 5.814 7.402 13.307 Atomic orbital electron populations 1.22467 0.85612 1.02608 1.01704 1.61994 1.09535 1.14170 1.40252 1.22951 0.96218 0.88217 1.03296 1.23021 0.92726 0.97458 0.89403 1.88054 1.69950 1.23397 1.49697 1.22353 0.89727 0.84527 1.02606 1.22168 0.97520 0.92519 0.94872 0.91147 1.20291 0.77439 0.87440 0.83694 1.90638 1.50534 1.71785 1.30123 1.45937 1.65093 1.14699 1.09437 1.21811 0.96431 0.80407 0.99042 0.89035 1.23977 1.00188 1.00933 0.94574 1.21481 0.88829 0.93405 0.92824 0.91549 1.42383 1.43769 1.23303 1.26355 1.19656 1.14362 1.03810 0.99652 0.90561 1.25434 1.01235 0.97297 1.02054 1.69767 1.37684 1.12178 1.41226 0.85168 0.77863 0.77373 0.79849 1.19300 1.22232 1.22654 1.23826 0.98496 1.00021 0.97510 0.94880 0.92287 0.88834 0.86441 0.93440 0.92134 0.85462 0.88798 0.92821 0.75791 0.86290 0.91973 0.78964 0.94093 0.94185 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.19 127.69 1.17 1.73 16 2 N -0.53 -14.58 4.53 -900.48 -4.08 -18.66 16 3 C 0.02 0.43 5.66 86.32 0.49 0.92 16 4 C 0.05 1.16 7.01 72.02 0.50 1.66 16 5 O -0.39 -12.76 10.83 -148.98 -1.61 -14.38 16 6 C 0.09 2.98 6.27 72.02 0.45 3.43 16 7 C 0.04 1.31 2.38 44.18 0.11 1.41 16 8 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 9 C 0.53 18.22 6.01 87.66 0.53 18.75 16 10 O -0.55 -21.74 15.29 -3.02 -0.05 -21.78 16 11 N -0.70 -23.45 4.29 -440.03 -1.89 -25.34 16 12 C 0.13 3.98 3.98 45.52 0.18 4.16 16 13 H 0.09 2.66 8.07 -2.39 -0.02 2.65 16 14 C -0.16 -4.64 7.57 31.12 0.24 -4.41 16 15 C 0.14 5.36 4.56 45.52 0.21 5.57 16 16 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 17 N -0.72 -33.86 5.06 -320.46 -1.62 -35.48 16 18 C -0.24 -12.78 9.97 84.03 0.84 -11.94 16 19 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 21 N -0.96 -55.34 13.06 21.65 0.28 -55.05 16 22 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 C -0.16 -5.27 7.62 31.12 0.24 -5.04 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 1.66 6.18 -2.39 -0.01 1.65 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.41 14.26 7.85 -92.71 -0.73 13.53 16 37 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 39 H 0.38 18.75 6.31 -92.71 -0.59 18.16 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -64.95 338.15 -1.81 -66.76 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -0.29 Total: 44.10 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 5.42 Total: 13.06 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -7.31 Total: -134.54 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.66 Total: -36.16 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.95 -1.81 -66.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021991265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.226 kcal (2) G-P(sol) polarization free energy of solvation -64.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds