Wall clock time and date at job start Tue Mar 31 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47019 * 110.99706 * 2 1 4 4 C 1.53096 * 109.25582 * 182.39032 * 3 2 1 5 5 O 1.43020 * 109.25861 * 303.15143 * 4 3 2 6 6 C 1.43009 * 113.73776 * 58.66848 * 5 4 3 7 7 C 1.47013 * 110.99840 * 123.62976 * 2 1 3 8 8 H 1.08994 * 109.54478 * 297.57042 * 7 2 1 9 9 C 1.50701 * 109.50437 * 57.67600 * 7 2 1 10 10 O 1.21284 * 120.00211 * 27.46434 * 9 7 2 11 11 N 1.34771 * 120.00212 * 207.46394 * 9 7 2 12 12 C 1.46500 * 120.00442 * 180.02562 * 11 9 7 13 13 H 1.08996 * 112.84533 * 336.19476 * 12 11 9 14 14 C 1.53780 * 113.61321 * 107.49862 * 12 11 9 15 15 C 1.53784 * 87.07845 * 139.98578 * 14 12 11 16 16 H 1.09003 * 113.61833 * 89.11831 * 15 14 12 17 17 N 1.46510 * 113.68908 * 220.00948 * 15 14 12 18 18 C 1.36938 * 119.99644 * 254.06023 * 17 15 14 19 19 H 1.07997 * 119.99984 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99684 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00043 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99864 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47227 * 60.00095 * 22 20 18 24 24 H 1.48493 * 109.47047 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47029 * 300.00291 * 22 20 18 26 26 C 1.53780 * 87.08131 * 334.56461 * 15 14 12 27 27 H 1.08992 * 109.47704 * 290.24952 * 1 2 3 28 28 H 1.09006 * 109.47340 * 50.25616 * 1 2 3 29 29 H 1.09003 * 109.47011 * 170.24931 * 1 2 3 30 30 H 1.08996 * 109.50706 * 62.45304 * 3 2 1 31 31 H 1.09003 * 109.53826 * 302.34482 * 3 2 1 32 32 H 1.09001 * 109.50870 * 183.21316 * 4 3 2 33 33 H 1.09001 * 109.54438 * 63.10541 * 4 3 2 34 34 H 1.09004 * 109.50788 * 181.39488 * 6 5 4 35 35 H 1.09004 * 109.50885 * 61.26644 * 6 5 4 36 36 H 0.97001 * 120.00018 * 359.97438 * 11 9 7 37 37 H 1.08995 * 113.61742 * 25.43779 * 14 12 11 38 38 H 1.09003 * 113.61577 * 254.52597 * 14 12 11 39 39 H 0.96989 * 120.00025 * 74.05998 * 17 15 14 40 40 H 0.97003 * 119.99766 * 179.97438 * 21 20 18 41 41 H 1.08999 * 113.61189 * 139.97915 * 26 15 14 42 42 H 1.08994 * 113.61775 * 270.80447 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0174 0.5575 1.0404 6 6 3.5249 -0.7848 1.0710 7 6 1.9958 -0.7601 1.1428 8 1 1.6827 -0.2849 2.0723 9 6 1.4670 -2.1705 1.0957 10 8 1.1662 -2.6703 0.0324 11 7 1.3283 -2.8766 2.2353 12 6 0.8147 -4.2479 2.1895 13 1 0.2114 -4.4445 1.3033 14 6 1.8878 -5.3167 2.4561 15 6 0.8260 -6.0644 3.2798 16 1 0.2263 -6.7591 2.6915 17 7 1.3500 -6.6651 4.5090 18 6 1.5328 -8.0202 4.5849 19 1 1.2910 -8.6459 3.7385 20 6 2.0298 -8.5893 5.7494 21 7 2.3249 -7.8266 6.7806 22 14 2.2798 -10.4376 5.8527 23 1 3.2410 -10.8664 4.8052 24 1 2.8161 -10.7904 7.1917 25 1 0.9803 -11.1253 5.6435 26 6 0.1501 -4.7008 3.5002 27 1 -0.3634 0.3556 0.9640 28 1 -0.3634 0.6571 -0.7902 29 1 -0.3633 -1.0129 -0.1741 30 1 1.6826 1.8826 0.9109 31 1 1.6133 1.9098 -0.8679 32 1 3.9221 2.3399 -0.0030 33 1 3.8392 0.8648 -0.9963 34 1 3.9221 -1.2984 1.9466 35 1 3.8385 -1.3083 0.1678 36 1 1.5692 -2.4771 3.0857 37 1 2.7264 -4.9547 3.0507 38 1 2.2025 -5.8524 1.5605 39 1 1.5675 -6.1031 5.2690 40 1 2.6719 -8.2244 7.5945 41 1 -0.9379 -4.7392 3.4474 42 1 0.5127 -4.1710 4.3810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021991266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:55 Heat of formation + Delta-G solvation = -33.843018 kcal Electronic energy + Delta-G solvation = -22590.842793 eV Core-core repulsion = 19186.282129 eV Total energy + Delta-G solvation = -3404.560664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67865 -39.19810 -37.83630 -35.82054 -34.11682 -32.87962 -31.60352 -29.88187 -29.05163 -25.46320 -25.15576 -24.51287 -24.24627 -22.48336 -21.02020 -20.25986 -19.26372 -17.49126 -17.10397 -16.76545 -16.67796 -16.08691 -15.47193 -15.23567 -14.83290 -14.48115 -14.42391 -14.22914 -14.07164 -13.33271 -13.06194 -12.95668 -12.64241 -12.58871 -12.08094 -11.97641 -11.94860 -11.55220 -11.28310 -11.04504 -10.92030 -10.66047 -10.53799 -10.34884 -10.17937 -10.07037 -9.71193 -9.52674 -8.93403 -8.81285 -8.69681 -7.00948 -5.81978 -3.11019 2.51465 2.97483 3.40913 3.42226 3.46803 3.47636 3.68800 4.46708 4.53722 4.58102 4.59177 4.70163 4.85509 4.87361 5.02980 5.18118 5.19606 5.22247 5.23452 5.33597 5.36429 5.44403 5.45220 5.58762 5.74433 5.83170 5.91219 6.08040 6.21565 6.27447 6.41885 6.50186 6.57843 6.58807 6.70883 6.74017 7.03577 7.56781 7.66783 8.23478 8.36550 9.47897 10.04165 10.38751 11.40361 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035169 B = 0.002995 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.962797 B = 9348.188766 C = 9731.727061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.518 5.518 3 C 0.018 3.982 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.076 3.924 7 C 0.031 3.969 8 H 0.069 0.931 9 C 0.518 3.482 10 O -0.522 6.522 11 N -0.713 5.713 12 C 0.118 3.882 13 H 0.109 0.891 14 C -0.176 4.176 15 C 0.169 3.831 16 H 0.079 0.921 17 N -0.710 5.710 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.158 4.158 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.066 0.934 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 20.086 -11.711 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.244 5.244 3 C -0.110 4.110 4 C -0.017 4.017 5 O -0.297 6.297 6 C -0.002 4.002 7 C -0.082 4.082 8 H 0.086 0.914 9 C 0.302 3.698 10 O -0.397 6.397 11 N -0.364 5.364 12 C 0.013 3.987 13 H 0.127 0.873 14 C -0.218 4.218 15 C 0.056 3.944 16 H 0.097 0.903 17 N -0.348 5.348 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.198 4.198 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.480 19.340 -12.763 23.219 hybrid contribution -0.150 -0.236 1.368 1.396 sum -1.630 19.104 -11.395 22.304 Atomic orbital electron populations 1.22509 0.86143 1.04001 1.00172 1.61969 1.08881 1.12753 1.40801 1.22867 0.96623 0.89468 1.02045 1.22733 0.92124 0.96586 0.90299 1.88025 1.69518 1.23591 1.48521 1.22564 0.89409 0.84358 1.03830 1.22363 0.98058 0.93501 0.94228 0.91361 1.20116 0.78414 0.86809 0.84461 1.90700 1.48884 1.70748 1.29323 1.46122 1.65794 1.15591 1.08855 1.22516 0.97503 0.79282 0.99353 0.87284 1.24334 0.99031 0.97318 1.01130 1.21347 0.92860 0.90752 0.89446 0.90291 1.42344 1.75551 1.05232 1.11701 1.19268 1.36287 0.83684 0.98420 0.91029 1.24763 1.01845 0.97982 0.96211 1.69644 1.50222 1.34152 1.04108 0.86251 0.77919 0.85196 0.76729 1.21172 1.21674 1.21187 1.23848 1.00098 0.99600 0.96247 0.95625 0.90993 0.89856 0.93780 0.89091 0.88139 0.91873 0.87571 0.91223 0.76655 0.90147 0.92193 0.78091 0.93376 0.91510 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.12 60.07 0.55 0.74 16 2 N -0.52 -5.58 4.53 -235.97 -1.07 -6.65 16 3 C 0.02 0.15 5.65 -3.71 -0.02 0.13 16 4 C 0.06 0.48 7.01 37.21 0.26 0.74 16 5 O -0.38 -4.02 10.83 -35.23 -0.38 -4.40 16 6 C 0.08 0.80 6.27 37.21 0.23 1.04 16 7 C 0.03 0.34 2.36 -68.75 -0.16 0.17 16 8 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 9 C 0.52 6.88 6.09 -10.99 -0.07 6.82 16 10 O -0.52 -8.83 14.92 5.55 0.08 -8.75 16 11 N -0.71 -8.83 5.35 -53.02 -0.28 -9.11 16 12 C 0.12 1.71 4.24 -67.12 -0.28 1.43 16 13 H 0.11 1.67 7.46 -51.93 -0.39 1.28 16 14 C -0.18 -3.01 7.68 -25.92 -0.20 -3.21 16 15 C 0.17 3.22 4.47 -67.11 -0.30 2.92 16 16 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 17 N -0.71 -17.32 5.41 -52.63 -0.28 -17.60 16 18 C -0.25 -6.72 9.97 -15.06 -0.15 -6.87 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C -0.16 -2.41 7.58 -25.92 -0.20 -2.61 16 27 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 28 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 29 H 0.08 1.02 6.39 -51.93 -0.33 0.69 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 4.08 8.73 -40.82 -0.36 3.72 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.39 9.88 7.91 -40.82 -0.32 9.56 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -32.24 341.28 -8.38 -40.62 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.85 Total: 9.75 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.43 Total: 0.87 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.91 Total: -60.37 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.30 Total: -13.15 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.24 -8.38 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021991266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds