Wall clock time and date at job start Tue Mar 31 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47152 * 2 1 4 4 C 1.47012 * 111.00301 * 313.63579 * 3 2 1 5 5 C 1.53094 * 109.25948 * 177.60631 * 4 3 2 6 6 O 1.43016 * 109.25951 * 56.84633 * 5 4 3 7 7 C 1.43016 * 113.73848 * 301.33218 * 6 5 4 8 8 C 1.47012 * 110.99987 * 189.99796 * 3 2 1 9 9 H 1.09002 * 109.50529 * 62.46073 * 8 3 2 10 10 C 1.50700 * 109.50816 * 302.37173 * 8 3 2 11 11 O 1.21286 * 119.99902 * 0.09278 * 10 8 3 12 12 N 1.34778 * 120.00192 * 180.08473 * 10 8 3 13 13 C 1.46495 * 120.00201 * 180.02562 * 12 10 8 14 14 C 1.53951 * 113.74215 * 253.74497 * 13 12 10 15 15 N 1.47809 * 86.03371 * 222.08388 * 14 13 12 16 16 C 1.36941 * 134.45444 * 204.64286 * 15 14 13 17 17 H 1.07996 * 119.99990 * 179.86739 * 16 15 14 18 18 C 1.38807 * 119.99806 * 359.86388 * 16 15 14 19 19 N 1.31615 * 120.00345 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99988 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46912 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46882 * 120.00110 * 20 18 16 23 23 H 1.48499 * 109.47477 * 240.00441 * 20 18 16 24 24 C 1.47577 * 91.05520 * 24.54688 * 15 14 13 25 25 H 1.08994 * 109.47739 * 300.00222 * 1 2 3 26 26 H 1.09008 * 109.47373 * 59.99976 * 1 2 3 27 27 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47132 * 240.00371 * 2 1 3 29 29 H 1.08991 * 109.47210 * 120.00246 * 2 1 3 30 30 H 1.08996 * 109.50816 * 297.54116 * 4 3 2 31 31 H 1.09001 * 109.50501 * 57.62345 * 4 3 2 32 32 H 1.09001 * 109.50863 * 176.78429 * 5 4 3 33 33 H 1.09000 * 109.50604 * 296.86996 * 5 4 3 34 34 H 1.08996 * 109.50346 * 298.73366 * 7 6 5 35 35 H 1.09003 * 109.50251 * 178.60311 * 7 6 5 36 36 H 0.97001 * 119.99849 * 0.02562 * 12 10 8 37 37 H 1.09002 * 112.94413 * 25.33562 * 13 12 10 38 38 H 1.09001 * 113.76598 * 336.34362 * 14 13 12 39 39 H 1.08990 * 113.77133 * 107.74577 * 14 13 12 40 40 H 0.97007 * 120.00213 * 179.97438 * 19 18 16 41 41 H 1.08995 * 113.77365 * 221.15229 * 24 15 14 42 42 H 1.09003 * 113.87112 * 89.76169 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3024 2.1975 -0.9933 5 6 1.8009 3.6430 -0.9183 6 8 3.2164 3.6650 -1.1211 7 6 3.9464 2.8844 -0.1708 8 6 3.4696 1.4312 -0.2383 9 1 3.6897 1.0213 -1.2240 10 6 4.1787 0.6186 0.8143 11 8 3.5400 0.0547 1.6775 12 7 5.5226 0.5185 0.7965 13 6 6.2119 -0.2718 1.8195 14 6 6.9428 0.5803 2.8730 15 7 8.0441 -0.3980 2.7508 16 6 9.0610 -0.8049 3.5727 17 1 9.7555 -1.5614 3.2385 18 6 9.1991 -0.2450 4.8353 19 7 8.3524 0.6766 5.2428 20 14 10.5859 -0.8005 5.9568 21 1 11.3929 -1.8398 5.2685 22 1 11.4516 0.3604 6.2859 23 1 10.0161 -1.3634 7.2073 24 6 7.6065 -0.7616 1.3891 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.4878 1.7999 -1.9911 31 1 0.2332 2.1691 -0.7831 32 1 1.3131 4.2369 -1.6913 33 1 1.5666 4.0584 0.0619 34 1 3.7751 3.2775 0.8313 35 1 5.0104 2.9296 -0.4033 36 1 6.0335 0.9698 0.1064 37 1 5.5844 -1.0543 2.2463 38 1 7.2028 1.5802 2.5258 39 1 6.4599 0.5801 3.8501 40 1 8.4488 1.0677 6.1253 41 1 7.6525 -1.8310 1.1837 42 1 8.0610 -0.1577 0.6037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030577842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:36 Heat of formation + Delta-G solvation = -29.964532 kcal Electronic energy + Delta-G solvation = -23109.716224 eV Core-core repulsion = 19705.323744 eV Total energy + Delta-G solvation = -3404.392480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66963 -40.19019 -38.98461 -37.07503 -35.19393 -33.95169 -32.61882 -31.60533 -29.45450 -27.70942 -26.62230 -26.11934 -24.74603 -23.24980 -22.06801 -21.39453 -20.94167 -18.79361 -18.45602 -17.70688 -17.33580 -16.98519 -16.88475 -16.28516 -16.03408 -15.81831 -15.64154 -15.58007 -15.14460 -14.64187 -14.19292 -14.13555 -13.57914 -13.37231 -13.24456 -13.14325 -12.84797 -12.78270 -12.66153 -12.62668 -12.34728 -12.28561 -12.01776 -11.87258 -11.54179 -11.50227 -10.96252 -10.90745 -10.45960 -9.97700 -9.34100 -8.97773 -7.92607 -5.27945 1.45651 1.47270 1.53926 1.57583 1.98750 2.47803 2.66399 2.93063 3.25502 3.38795 3.65621 3.73998 3.83815 3.94747 3.97731 4.13533 4.22592 4.32183 4.35675 4.42804 4.51241 4.56550 4.62085 4.67970 4.74842 4.78895 4.90154 4.94104 4.98133 5.10734 5.22505 5.25620 5.30630 5.48330 5.70099 5.82907 5.89223 6.01257 6.06827 6.58527 6.87802 7.26883 7.57734 8.50299 9.24307 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030686 B = 0.003528 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.241322 B = 7935.228950 C = 8265.431540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 N -0.535 5.535 4 C 0.015 3.985 5 C 0.055 3.945 6 O -0.387 6.387 7 C 0.077 3.923 8 C 0.041 3.959 9 H 0.092 0.908 10 C 0.518 3.482 11 O -0.560 6.560 12 N -0.700 5.700 13 C 0.123 3.877 14 C 0.153 3.847 15 N -0.639 5.639 16 C -0.235 4.235 17 H 0.091 0.909 18 C -0.068 4.068 19 N -0.955 5.955 20 Si 0.982 3.018 21 H -0.261 1.261 22 H -0.292 1.292 23 H -0.294 1.294 24 C 0.122 3.878 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.123 0.877 36 H 0.415 0.585 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.031 0.969 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 3.632 -17.798 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 N -0.262 5.262 4 C -0.112 4.112 5 C -0.022 4.022 6 O -0.306 6.306 7 C 0.000 4.000 8 C -0.072 4.072 9 H 0.110 0.890 10 C 0.304 3.696 11 O -0.438 6.438 12 N -0.353 5.353 13 C 0.017 3.983 14 C 0.026 3.974 15 N -0.366 5.366 16 C -0.363 4.363 17 H 0.108 0.892 18 C -0.261 4.261 19 N -0.604 5.604 20 Si 0.810 3.190 21 H -0.185 1.185 22 H -0.219 1.219 23 H -0.221 1.221 24 C -0.003 4.003 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.252 0.748 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.451 3.500 -16.615 22.296 hybrid contribution 1.068 -0.451 0.348 1.210 sum -13.382 3.050 -16.267 21.284 Atomic orbital electron populations 1.21863 0.93269 1.02630 1.02518 1.22401 0.97065 0.88149 1.01328 1.62037 1.01363 1.12870 1.49930 1.23020 1.00650 0.93940 0.93569 1.22952 0.80477 0.95627 1.03114 1.87999 1.19389 1.69528 1.53652 1.22609 0.97431 0.86512 0.93483 1.22267 0.90202 0.97771 0.96923 0.89024 1.20716 0.82397 0.80708 0.85784 1.90628 1.66071 1.48072 1.39063 1.45882 1.06167 1.51883 1.31369 1.23142 0.91921 0.94229 0.89035 1.22592 0.86515 0.92013 0.96294 1.46056 1.32581 1.44873 1.13137 1.19470 1.04528 1.17390 0.94888 0.89169 1.25700 1.01869 0.99285 0.99284 1.70044 1.39548 1.31355 1.19422 0.84964 0.78275 0.77452 0.78340 1.18509 1.21851 1.22109 1.23013 0.89769 0.99667 0.87849 0.92512 0.90912 0.91379 0.95193 0.90314 0.93210 0.87145 0.85505 0.92574 0.92987 0.85899 0.74814 0.89107 0.95433 0.95060 0.94288 0.91791 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 71.98 0.66 -1.89 16 2 C 0.04 0.89 5.33 86.30 0.46 1.35 16 3 N -0.54 -12.47 4.51 -874.42 -3.94 -16.41 16 4 C 0.02 0.25 4.94 86.31 0.43 0.68 16 5 C 0.05 0.87 7.01 72.01 0.50 1.38 16 6 O -0.39 -7.89 10.83 -148.98 -1.61 -9.51 16 7 C 0.08 1.63 6.17 72.01 0.44 2.08 16 8 C 0.04 0.93 2.36 44.18 0.10 1.04 16 9 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 10 C 0.52 15.66 6.89 87.66 0.60 16.26 16 11 O -0.56 -21.91 13.32 -3.05 -0.04 -21.96 16 12 N -0.70 -19.93 5.28 -447.39 -2.36 -22.29 16 13 C 0.12 4.66 4.40 46.75 0.21 4.87 16 14 C 0.15 7.42 7.33 86.44 0.63 8.05 16 15 N -0.64 -32.64 3.70 -716.76 -2.65 -35.29 16 16 C -0.23 -13.16 10.70 84.03 0.90 -12.26 16 17 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 19 N -0.95 -59.05 11.39 21.65 0.25 -58.80 16 20 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 C 0.12 4.58 8.69 86.49 0.75 5.33 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 0.96 6.28 -2.38 -0.01 0.95 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 0.66 8.08 -2.39 -0.02 0.64 16 29 H 0.08 2.46 5.48 -2.39 -0.01 2.45 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.45 6.05 -2.39 -0.01 1.44 16 32 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 2.07 7.68 -2.39 -0.02 2.06 16 36 H 0.41 8.77 8.20 -92.71 -0.76 8.01 16 37 H 0.09 3.86 7.51 -2.39 -0.02 3.84 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.03 1.79 7.16 -2.39 -0.02 1.77 16 40 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 Total: -1.00 -73.78 332.35 -1.92 -75.70 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.26 Total: 17.08 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 6.16 Total: 23.39 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -8.71 Total: -132.79 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.65 Total: -31.46 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.78 -1.92 -75.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030577842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.737 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds