Wall clock time and date at job start Tue Mar 31 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47022 * 111.00121 * 2 1 4 4 C 1.53098 * 109.25606 * 177.60845 * 3 2 1 5 5 O 1.43010 * 109.25839 * 56.84950 * 4 3 2 6 6 C 1.43014 * 113.74003 * 301.32704 * 5 4 3 7 7 H 1.09004 * 109.54206 * 298.71128 * 6 5 4 8 8 C 1.50703 * 109.50581 * 178.60799 * 6 5 4 9 9 O 1.21283 * 119.99884 * 355.21572 * 8 6 5 10 10 N 1.34774 * 119.99871 * 175.21491 * 8 6 5 11 11 C 1.46502 * 120.00005 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.46846 * 180.02562 * 11 10 8 13 13 C 1.53504 * 114.20366 * 175.00045 * 12 11 10 14 14 N 1.47066 * 88.04678 * 87.54725 * 13 12 11 15 15 C 1.36941 * 136.05534 * 207.12355 * 14 13 12 16 16 H 1.07998 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99683 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00444 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.47228 * 59.99504 * 19 17 15 21 21 H 1.48494 * 109.47364 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47169 * 299.99926 * 19 17 15 23 23 C 1.47064 * 87.88659 * 27.09306 * 14 13 12 24 24 C 1.47017 * 111.00268 * 236.36511 * 2 1 3 25 25 H 1.08996 * 109.47358 * 183.63089 * 1 2 3 26 26 H 1.09007 * 109.47133 * 303.63675 * 1 2 3 27 27 H 1.09004 * 109.47176 * 63.63257 * 1 2 3 28 28 H 1.08998 * 109.50431 * 297.54110 * 3 2 1 29 29 H 1.09001 * 109.50553 * 57.62718 * 3 2 1 30 30 H 1.09002 * 109.50258 * 176.78576 * 4 3 2 31 31 H 1.08996 * 109.50831 * 296.86552 * 4 3 2 32 32 H 0.97001 * 120.00086 * 0.02562 * 10 8 6 33 33 H 1.08992 * 109.47074 * 60.00381 * 11 10 8 34 34 H 1.09001 * 109.47095 * 299.99780 * 11 10 8 35 35 H 1.08994 * 113.41713 * 41.80092 * 12 11 10 36 36 H 1.09002 * 113.46865 * 332.73821 * 13 12 11 37 37 H 1.08999 * 113.46581 * 202.35597 * 13 12 11 38 38 H 0.96996 * 120.00248 * 180.02562 * 18 17 15 39 39 H 1.08999 * 113.47096 * 87.65665 * 23 14 13 40 40 H 1.09005 * 113.46966 * 218.04058 * 23 14 13 41 41 H 1.09007 * 109.50317 * 62.45814 * 24 2 1 42 42 H 1.08998 * 109.50427 * 302.33248 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0174 0.5574 -1.0403 6 6 3.5249 -0.7849 -1.0709 7 1 3.8385 -1.3091 -0.1681 8 6 4.0741 -1.4949 -2.2815 9 8 4.7435 -0.8866 -3.0894 10 7 3.8214 -2.8058 -2.4661 11 6 4.3548 -3.4959 -3.6432 12 6 3.9244 -4.9638 -3.6123 13 6 4.3237 -5.7631 -4.8605 14 7 5.6103 -6.0454 -4.2064 15 6 6.8864 -6.3224 -4.6191 16 1 7.1148 -6.3687 -5.6736 17 6 7.8862 -6.5435 -3.6819 18 7 7.6079 -6.4866 -2.3967 19 14 9.6270 -6.9206 -4.2447 20 1 10.1408 -5.7886 -5.0572 21 1 10.4996 -7.1144 -3.0590 22 1 9.6247 -8.1581 -5.0657 23 6 4.9237 -5.8987 -2.9142 24 6 1.9959 -0.7602 -1.1427 25 1 -0.3634 -1.0255 0.0651 26 1 -0.3634 0.5693 0.8557 27 1 -0.3634 0.4564 -0.9208 28 1 1.6828 1.8826 -0.9110 29 1 1.6127 1.9095 0.8678 30 1 3.9222 2.3398 0.0030 31 1 3.8385 0.8651 0.9967 32 1 3.2857 -3.2922 -1.8201 33 1 5.4431 -3.4359 -3.6374 34 1 3.9696 -3.0237 -4.5469 35 1 2.8887 -5.1051 -3.3036 36 1 4.4177 -5.1501 -5.7568 37 1 3.7136 -6.6522 -5.0201 38 1 8.3067 -6.6407 -1.7418 39 1 4.4729 -6.8236 -2.5546 40 1 5.5281 -5.4017 -2.1554 41 1 1.6828 -0.2842 -2.0720 42 1 1.6133 -1.7803 -1.1087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031593982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:06 Heat of formation + Delta-G solvation = -8.114371 kcal Electronic energy + Delta-G solvation = -22725.530955 eV Core-core repulsion = 19322.085968 eV Total energy + Delta-G solvation = -3403.444986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36547 -38.91772 -37.98525 -35.93200 -34.23266 -32.26117 -31.68890 -29.27853 -28.38548 -26.28354 -24.74505 -24.53868 -24.38571 -22.37162 -21.03273 -20.25941 -18.85748 -17.23663 -16.87569 -16.63046 -16.17583 -15.78571 -15.35707 -15.24957 -14.97021 -14.80921 -14.27858 -14.14317 -13.73869 -13.63494 -13.06664 -12.70762 -12.58458 -12.48162 -12.23341 -11.98850 -11.67953 -11.53382 -11.08755 -10.99184 -10.96652 -10.71170 -10.53564 -9.92796 -9.91227 -9.81065 -9.52191 -9.23032 -8.81185 -8.78738 -8.69121 -6.86448 -5.74397 -3.06668 2.74572 2.93745 3.43108 3.44547 3.47194 3.48129 3.97649 4.48948 4.51787 4.60653 4.65499 4.81179 4.92241 5.02527 5.12967 5.17439 5.22995 5.26914 5.32066 5.38502 5.42236 5.48789 5.49564 5.61314 5.63149 6.01426 6.14621 6.36241 6.48496 6.52060 6.52732 6.59224 6.66134 6.77127 6.91613 7.18632 7.29686 7.56755 7.74093 8.00133 8.43962 9.06268 9.73106 10.65767 11.43061 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026088 B = 0.003501 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.020512 B = 7996.100148 C = 8514.862699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.014 3.986 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.078 3.922 7 H 0.094 0.906 8 C 0.517 3.483 9 O -0.520 6.520 10 N -0.718 5.718 11 C 0.152 3.848 12 C -0.162 4.162 13 C 0.127 3.873 14 N -0.609 5.609 15 C -0.219 4.219 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.912 3.088 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.158 3.842 24 C 0.029 3.971 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.254 0.746 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 12.766 7.051 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.114 4.114 4 C -0.016 4.016 5 O -0.272 6.272 6 C 0.016 3.984 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.394 6.394 10 N -0.371 5.371 11 C 0.030 3.970 12 C -0.182 4.182 13 C 0.000 4.000 14 N -0.335 5.335 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.032 3.968 24 C -0.099 4.099 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.232 0.768 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.181 12.980 6.771 21.090 hybrid contribution 0.109 -0.381 -0.382 0.550 sum -15.071 12.600 6.389 20.657 Atomic orbital electron populations 1.22397 0.86436 1.02751 1.00781 1.62217 1.08543 1.13724 1.42068 1.22866 0.96828 0.89768 1.01941 1.22743 0.91953 0.96727 0.90162 1.88147 1.69244 1.21774 1.48045 1.21964 0.92721 0.85653 0.98062 0.88825 1.19921 0.81083 0.82350 0.86582 1.90736 1.37862 1.66003 1.44814 1.45933 1.54748 1.09154 1.27225 1.21041 1.00354 0.89766 0.85856 1.23295 0.98779 0.94072 1.02023 1.22343 0.88249 0.95143 0.94238 1.45590 1.02327 1.83121 1.02484 1.18885 0.82103 1.41523 0.92105 0.90186 1.24775 0.98108 1.02162 0.95293 1.69803 1.32263 1.55323 0.99316 0.86200 0.84120 0.78212 0.77242 1.20985 1.21555 1.21229 1.22172 0.89479 0.93760 0.91341 1.22695 0.94241 1.00212 0.92766 0.90831 0.91017 0.95349 0.93673 0.89360 0.87871 0.91908 0.76794 0.89718 0.92174 0.91007 0.94023 0.94644 0.93641 0.95735 0.90809 0.93161 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.60 60.06 0.58 0.74 16 2 N -0.54 -4.92 4.99 -242.59 -1.21 -6.13 16 3 C 0.01 0.12 5.66 -3.71 -0.02 0.10 16 4 C 0.06 0.60 7.01 37.21 0.26 0.86 16 5 O -0.35 -5.11 10.01 -55.06 -0.55 -5.66 16 6 C 0.08 1.01 3.22 -27.84 -0.09 0.92 16 7 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 8 C 0.52 8.50 7.18 -10.99 -0.08 8.43 16 9 O -0.52 -11.08 16.51 -14.28 -0.24 -11.31 16 10 N -0.72 -10.63 5.52 -60.29 -0.33 -10.97 16 11 C 0.15 2.72 5.50 -4.04 -0.02 2.70 16 12 C -0.16 -2.83 4.18 -90.04 -0.38 -3.21 16 13 C 0.13 2.54 8.26 -8.50 -0.07 2.47 16 14 N -0.61 -15.52 3.62 -184.55 -0.67 -16.18 16 15 C -0.22 -6.20 10.75 -15.06 -0.16 -6.36 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.92 -27.45 11.51 55.49 0.64 -26.81 16 19 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.16 3.59 6.90 -8.44 -0.06 3.53 16 24 C 0.03 0.30 4.90 -3.71 -0.02 0.28 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.61 8.34 -40.82 -0.34 4.27 16 33 H 0.08 1.91 7.92 -51.93 -0.41 1.50 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.87 7.10 -51.93 -0.37 1.50 16 41 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 42 H 0.09 0.79 8.01 -51.93 -0.42 0.37 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -34.97 343.14 -9.37 -44.33 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.00 Total: -0.14 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.16 Total: 10.17 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.57 Total: -60.09 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.79 Total: -16.97 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.97 -9.37 -44.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031593982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.218 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds