Wall clock time and date at job start Tue Mar 31 2020 03:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47022 * 111.00121 * 2 1 4 4 C 1.53098 * 109.25606 * 177.60845 * 3 2 1 5 5 O 1.43010 * 109.25839 * 56.84950 * 4 3 2 6 6 C 1.43014 * 113.74003 * 301.32704 * 5 4 3 7 7 H 1.09004 * 109.54206 * 298.71128 * 6 5 4 8 8 C 1.50703 * 109.50581 * 178.60799 * 6 5 4 9 9 O 1.21283 * 119.99884 * 355.21572 * 8 6 5 10 10 N 1.34774 * 119.99871 * 175.21491 * 8 6 5 11 11 C 1.46502 * 120.00005 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.46846 * 180.02562 * 11 10 8 13 13 C 1.53504 * 114.20366 * 175.00045 * 12 11 10 14 14 N 1.47066 * 88.04678 * 87.54725 * 13 12 11 15 15 C 1.36941 * 136.05534 * 207.12355 * 14 13 12 16 16 H 1.07998 * 119.99884 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99683 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00444 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.47228 * 59.99504 * 19 17 15 21 21 H 1.48494 * 109.47364 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47169 * 299.99926 * 19 17 15 23 23 C 1.47064 * 87.88659 * 27.09306 * 14 13 12 24 24 C 1.47017 * 111.00268 * 236.36511 * 2 1 3 25 25 H 1.08996 * 109.47358 * 183.63089 * 1 2 3 26 26 H 1.09007 * 109.47133 * 303.63675 * 1 2 3 27 27 H 1.09004 * 109.47176 * 63.63257 * 1 2 3 28 28 H 1.08998 * 109.50431 * 297.54110 * 3 2 1 29 29 H 1.09001 * 109.50553 * 57.62718 * 3 2 1 30 30 H 1.09002 * 109.50258 * 176.78576 * 4 3 2 31 31 H 1.08996 * 109.50831 * 296.86552 * 4 3 2 32 32 H 0.97001 * 120.00086 * 0.02562 * 10 8 6 33 33 H 1.08992 * 109.47074 * 60.00381 * 11 10 8 34 34 H 1.09001 * 109.47095 * 299.99780 * 11 10 8 35 35 H 1.08994 * 113.41713 * 41.80092 * 12 11 10 36 36 H 1.09002 * 113.46865 * 332.73821 * 13 12 11 37 37 H 1.08999 * 113.46581 * 202.35597 * 13 12 11 38 38 H 0.96996 * 120.00248 * 180.02562 * 18 17 15 39 39 H 1.08999 * 113.47096 * 87.65665 * 23 14 13 40 40 H 1.09005 * 113.46966 * 218.04058 * 23 14 13 41 41 H 1.09007 * 109.50317 * 62.45814 * 24 2 1 42 42 H 1.08998 * 109.50427 * 302.33248 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0174 0.5574 -1.0403 6 6 3.5249 -0.7849 -1.0709 7 1 3.8385 -1.3091 -0.1681 8 6 4.0741 -1.4949 -2.2815 9 8 4.7435 -0.8866 -3.0894 10 7 3.8214 -2.8058 -2.4661 11 6 4.3548 -3.4959 -3.6432 12 6 3.9244 -4.9638 -3.6123 13 6 4.3237 -5.7631 -4.8605 14 7 5.6103 -6.0454 -4.2064 15 6 6.8864 -6.3224 -4.6191 16 1 7.1148 -6.3687 -5.6736 17 6 7.8862 -6.5435 -3.6819 18 7 7.6079 -6.4866 -2.3967 19 14 9.6270 -6.9206 -4.2447 20 1 10.1408 -5.7886 -5.0572 21 1 10.4996 -7.1144 -3.0590 22 1 9.6247 -8.1581 -5.0657 23 6 4.9237 -5.8987 -2.9142 24 6 1.9959 -0.7602 -1.1427 25 1 -0.3634 -1.0255 0.0651 26 1 -0.3634 0.5693 0.8557 27 1 -0.3634 0.4564 -0.9208 28 1 1.6828 1.8826 -0.9110 29 1 1.6127 1.9095 0.8678 30 1 3.9222 2.3398 0.0030 31 1 3.8385 0.8651 0.9967 32 1 3.2857 -3.2922 -1.8201 33 1 5.4431 -3.4359 -3.6374 34 1 3.9696 -3.0237 -4.5469 35 1 2.8887 -5.1051 -3.3036 36 1 4.4177 -5.1501 -5.7568 37 1 3.7136 -6.6522 -5.0201 38 1 8.3067 -6.6407 -1.7418 39 1 4.4729 -6.8236 -2.5546 40 1 5.5281 -5.4017 -2.1554 41 1 1.6828 -0.2842 -2.0720 42 1 1.6133 -1.7803 -1.1087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031593982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:05 Heat of formation + Delta-G solvation = -35.452835 kcal Electronic energy + Delta-G solvation = -22726.716439 eV Core-core repulsion = 19322.085968 eV Total energy + Delta-G solvation = -3404.630471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45846 -40.26672 -39.43510 -36.75539 -35.70950 -34.23245 -32.70478 -30.48078 -29.69126 -27.81372 -26.32394 -25.79693 -25.09128 -24.15895 -21.98248 -21.41103 -20.43470 -18.76887 -18.32862 -17.87897 -17.12619 -16.91866 -16.70384 -16.62809 -16.08954 -15.88874 -15.71994 -15.43254 -15.20955 -14.72533 -14.50953 -14.12435 -14.01287 -13.38162 -13.28118 -12.95034 -12.93939 -12.81857 -12.74894 -12.55823 -12.41736 -12.29648 -11.83082 -11.78395 -11.61444 -11.07257 -10.91788 -10.82425 -10.73824 -10.11136 -9.49152 -8.88740 -7.90161 -5.21592 1.43595 1.47210 1.47396 1.52736 1.79305 2.47760 2.71359 3.02471 3.32094 3.52293 3.62513 3.65485 3.76445 3.90252 3.97453 3.98050 4.16613 4.30623 4.49439 4.54439 4.59216 4.63317 4.63999 4.66506 4.78676 4.79976 4.90210 4.91459 4.99731 5.04517 5.10109 5.26250 5.36665 5.55456 5.64885 5.79765 5.91061 5.97420 6.00449 6.53589 6.93100 7.18958 7.62097 8.62897 9.27057 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026088 B = 0.003501 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.020512 B = 7996.100148 C = 8514.862699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.016 3.984 4 C 0.054 3.946 5 O -0.392 6.392 6 C 0.084 3.916 7 H 0.108 0.892 8 C 0.514 3.486 9 O -0.577 6.577 10 N -0.702 5.702 11 C 0.162 3.838 12 C -0.123 4.123 13 C 0.124 3.876 14 N -0.645 5.645 15 C -0.229 4.229 16 H 0.081 0.919 17 C -0.067 4.067 18 N -0.950 5.950 19 Si 0.974 3.026 20 H -0.281 1.281 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.154 3.846 24 C 0.037 3.963 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.037 0.963 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.418 0.582 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.247 0.753 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 12.907 7.579 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.112 4.112 4 C -0.022 4.022 5 O -0.311 6.311 6 C 0.022 3.978 7 H 0.125 0.875 8 C 0.299 3.701 9 O -0.455 6.455 10 N -0.355 5.355 11 C 0.038 3.962 12 C -0.142 4.142 13 C -0.001 4.001 14 N -0.372 5.372 15 C -0.357 4.357 16 H 0.099 0.901 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.803 3.197 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.201 1.201 23 C 0.028 3.972 24 C -0.091 4.091 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.088 0.912 32 H 0.255 0.745 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.629 13.104 7.310 23.151 hybrid contribution 0.799 -0.380 -0.551 1.042 sum -16.830 12.725 6.759 22.155 Atomic orbital electron populations 1.22480 0.84820 1.03714 1.01383 1.62261 1.09937 1.13825 1.41085 1.22887 0.95751 0.89806 1.02712 1.23011 0.93140 0.96914 0.89113 1.88097 1.70424 1.22524 1.50068 1.21930 0.94468 0.85194 0.96173 0.87486 1.20661 0.79959 0.82447 0.86984 1.90704 1.40460 1.67278 1.47077 1.45725 1.54197 1.08837 1.26745 1.20718 0.97252 0.90717 0.87478 1.23024 1.00087 0.92074 0.99003 1.22583 0.85950 0.96327 0.95244 1.45960 1.03216 1.83188 1.04808 1.19267 0.84030 1.40065 0.92327 0.90074 1.25574 1.01819 1.03126 0.95519 1.69983 1.32823 1.57012 1.00121 0.85214 0.79661 0.78239 0.76621 1.20711 1.21972 1.20099 1.22181 0.90217 0.94689 0.90110 1.22624 0.92005 1.01687 0.92821 0.89870 0.89556 0.95464 0.94463 0.86801 0.86466 0.91167 0.74479 0.95153 0.91317 0.85609 0.93347 0.92269 0.94436 0.95666 0.94413 0.94467 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.60 127.69 1.23 1.48 16 2 N -0.55 -8.48 4.99 -921.42 -4.59 -13.07 16 3 C 0.02 0.24 5.66 86.31 0.49 0.73 16 4 C 0.05 0.99 7.01 72.01 0.50 1.50 16 5 O -0.39 -11.25 10.01 -130.02 -1.30 -12.55 16 6 C 0.08 2.10 3.22 29.88 0.10 2.19 16 7 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 8 C 0.51 16.91 7.18 87.66 0.63 17.54 16 9 O -0.58 -25.43 16.51 15.92 0.26 -25.17 16 10 N -0.70 -20.04 5.52 -463.06 -2.56 -22.59 16 11 C 0.16 5.72 5.50 86.38 0.48 6.20 16 12 C -0.12 -4.01 4.18 -10.42 -0.04 -4.06 16 13 C 0.12 4.72 8.26 83.18 0.69 5.41 16 14 N -0.64 -32.95 3.62 -737.80 -2.67 -35.62 16 15 C -0.23 -13.13 10.75 84.03 0.90 -12.23 16 16 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 17 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 18 N -0.95 -58.38 11.51 21.65 0.25 -58.13 16 19 Si 0.97 47.27 29.55 68.60 2.03 49.29 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.15 6.94 6.90 83.22 0.57 7.51 16 24 C 0.04 0.69 4.90 86.31 0.42 1.11 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.42 8.60 8.34 -92.71 -0.77 7.82 16 33 H 0.03 1.42 7.92 -2.39 -0.02 1.40 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.13 2.89 8.14 -2.39 -0.02 2.88 16 36 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.96 7.10 -2.38 -0.02 1.95 16 41 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.12 1.56 8.01 -2.39 -0.02 1.54 16 Total: -1.00 -79.67 343.14 -1.93 -81.59 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.23 Total: 12.34 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.43 Total: 23.90 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -9.57 Total: -129.41 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -1.04 Total: -37.72 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -79.67 -1.93 -81.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031593982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.140 kcal (2) G-P(sol) polarization free energy of solvation -79.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds